Wall clock time and date at job start Mon Mar 30 2020 01:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.42942 * 2 1 4 4 C 1.54887 * 110.49111 * 237.31057 * 2 1 3 5 5 C 1.54968 * 102.77622 * 203.40492 * 4 2 1 6 6 C 1.54262 * 104.16091 * 37.88919 * 5 4 2 7 7 H 1.08998 * 110.03569 * 95.75344 * 6 5 4 8 8 C 1.50706 * 110.02938 * 217.13708 * 6 5 4 9 9 O 1.20824 * 120.00104 * 117.90933 * 8 6 5 10 10 O 1.34230 * 119.99717 * 297.90377 * 8 6 5 11 11 C 1.45199 * 116.99614 * 180.02562 * 10 8 6 12 12 C 1.50703 * 109.46928 * 180.02562 * 11 10 8 13 13 O 1.21278 * 119.99985 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99944 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.46992 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 C 1.53877 * 106.64207 * 336.44389 * 6 5 4 25 25 H 1.09001 * 109.47528 * 297.46197 * 1 2 3 26 26 H 1.08994 * 109.46866 * 57.46876 * 1 2 3 27 27 H 1.09003 * 109.46703 * 177.45980 * 1 2 3 28 28 H 1.08995 * 110.75515 * 321.69543 * 4 2 1 29 29 H 1.08995 * 110.75312 * 84.87798 * 4 2 1 30 30 H 1.09002 * 110.47440 * 279.23136 * 5 4 2 31 31 H 1.08998 * 110.52447 * 156.57004 * 5 4 2 32 32 H 1.09002 * 109.47177 * 60.00180 * 11 10 8 33 33 H 1.09001 * 109.47399 * 300.00009 * 11 10 8 34 34 H 0.97000 * 119.99708 * 359.97438 * 14 12 11 35 35 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 36 36 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 37 37 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 38 38 H 1.08994 * 110.03449 * 119.25922 * 24 6 5 39 39 H 1.09004 * 110.03545 * 240.64733 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0722 -0.7836 -1.2211 5 6 3.4914 -1.2000 -0.7584 6 6 3.3166 -1.5394 0.7362 7 1 3.1696 -2.6122 0.8608 8 6 4.5281 -1.0911 1.5125 9 8 4.4159 -0.2552 2.3777 10 8 5.7317 -1.6205 1.2427 11 6 6.8538 -1.1419 2.0302 12 6 8.1125 -1.8433 1.5891 13 8 8.0684 -2.6653 0.6984 14 7 9.2874 -1.5572 2.1844 15 6 10.5111 -2.2387 1.7552 16 6 11.6757 -1.7421 2.5726 17 1 11.5199 -0.9940 3.3357 18 6 12.9401 -2.2436 2.3468 19 7 13.9563 -1.8105 3.0605 20 14 13.2095 -3.5381 1.0274 21 1 13.5129 -2.8721 -0.2648 22 1 14.3479 -4.4096 1.4142 23 1 11.9822 -4.3615 0.8837 24 6 2.0699 -0.7772 1.2184 25 1 -0.3634 0.4739 0.9119 26 1 -0.3633 0.5526 -0.8664 27 1 -0.3633 -1.0267 -0.0455 28 1 1.4582 -1.6619 -1.4200 29 1 2.1222 -0.1418 -2.1006 30 1 4.1908 -0.3732 -0.8827 31 1 3.8320 -2.0755 -1.3112 32 1 6.6723 -1.3493 3.0848 33 1 6.9673 -0.0675 1.8855 34 1 9.3227 -0.8995 2.8965 35 1 10.6925 -2.0302 0.7008 36 1 10.3980 -3.3133 1.8988 37 1 14.8459 -2.1630 2.9015 38 1 1.3176 -1.4801 1.5761 39 1 2.3409 -0.0836 2.0144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776427817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:36 Heat of formation + Delta-G solvation = -145.307293 kcal Electronic energy + Delta-G solvation = -20074.010537 eV Core-core repulsion = 16787.861288 eV Total energy + Delta-G solvation = -3286.149250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90069 -39.08787 -38.16249 -36.34636 -34.38692 -32.45092 -32.02585 -29.63983 -29.15041 -27.25917 -25.64346 -22.78035 -21.96291 -20.70217 -20.13912 -19.68737 -18.05295 -17.54048 -16.72672 -16.67020 -15.93228 -15.38651 -15.14123 -14.96046 -14.53514 -14.09568 -13.94165 -13.34374 -13.26955 -13.09915 -12.66600 -12.38926 -12.33228 -12.09849 -11.93405 -11.62762 -11.22412 -11.08790 -11.08055 -10.97308 -10.84401 -10.79723 -10.74210 -10.44622 -10.01328 -9.55616 -9.35552 -8.83058 -8.28337 -6.25344 -4.28455 2.07464 2.36407 3.01702 3.24419 3.31296 3.39109 3.84031 4.11698 4.20220 4.29869 4.44826 4.76366 4.92350 4.97391 5.08031 5.09259 5.10349 5.15993 5.17382 5.21651 5.24857 5.28847 5.49065 5.56955 5.64861 5.72040 5.82398 5.85159 6.00955 6.08955 6.31671 6.71798 6.99480 7.08144 7.30401 7.62087 8.03716 8.39984 8.66769 8.78608 9.33680 10.86429 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051130 B = 0.002970 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.490946 B = 9425.797289 C = 9794.483654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.076 0.924 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.084 4.084 7 H 0.112 0.888 8 C 0.466 3.534 9 O -0.510 6.510 10 O -0.327 6.327 11 C 0.048 3.952 12 C 0.502 3.498 13 O -0.536 6.536 14 N -0.700 5.700 15 C 0.222 3.778 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.891 5.891 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.118 4.118 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.399 0.601 35 H 0.023 0.977 36 H 0.028 0.972 37 H 0.268 0.732 38 H 0.075 0.925 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.070 2.696 -5.522 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.095 0.905 4 C -0.158 4.158 5 C -0.150 4.150 6 C -0.104 4.104 7 H 0.130 0.870 8 C 0.308 3.692 9 O -0.398 6.398 10 O -0.242 6.242 11 C -0.030 4.030 12 C 0.285 3.715 13 O -0.414 6.414 14 N -0.350 5.350 15 C 0.100 3.900 16 C -0.584 4.584 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.528 5.528 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.156 4.156 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.233 0.767 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.857 2.319 -5.860 25.644 hybrid contribution 0.520 -0.204 -0.023 0.559 sum -24.337 2.115 -5.883 25.127 Atomic orbital electron populations 1.21795 0.94717 1.01856 1.01735 1.21995 0.95683 0.99552 0.94472 0.90539 1.22619 0.95414 1.00064 0.97664 1.22341 0.97925 1.02591 0.92178 1.21707 0.89906 1.02878 0.95868 0.87043 1.23793 0.84756 0.78920 0.81683 1.90634 1.85957 1.31418 1.31804 1.86572 1.16052 1.62550 1.59018 1.22826 0.84093 0.99901 0.96166 1.19934 0.84461 0.83620 0.83467 1.90697 1.86237 1.34079 1.30384 1.46072 1.07381 1.43273 1.38289 1.19554 0.81249 0.93176 0.95972 1.21066 0.90837 1.25638 1.20851 0.90130 1.24794 0.95581 0.96253 0.95976 1.69878 1.00074 1.42938 1.39865 0.86810 0.78665 0.82087 0.82097 1.19787 1.20834 1.18465 1.22353 0.94558 0.99598 0.99075 0.92588 0.92616 0.92525 0.90939 0.91058 0.90924 0.89888 0.88353 0.88382 0.76710 0.95884 0.95426 0.92180 0.90662 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.12 37.16 0.34 -0.51 16 2 C -0.10 -0.72 3.46 -88.96 -0.31 -1.02 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -0.83 6.33 -24.70 -0.16 -0.98 16 5 C -0.11 -0.99 6.34 -25.03 -0.16 -1.15 16 6 C -0.08 -0.81 3.41 -90.65 -0.31 -1.12 16 7 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 8 C 0.47 6.12 7.10 36.01 0.26 6.37 16 9 O -0.51 -7.57 14.96 -18.75 -0.28 -7.85 16 10 O -0.33 -4.99 9.73 -45.90 -0.45 -5.43 16 11 C 0.05 0.70 5.94 36.01 0.21 0.92 16 12 C 0.50 9.59 7.91 -10.98 -0.09 9.50 16 13 O -0.54 -12.36 16.50 -14.10 -0.23 -12.60 16 14 N -0.70 -13.90 5.55 -61.47 -0.34 -14.25 16 15 C 0.22 5.38 4.50 -5.19 -0.02 5.36 16 16 C -0.55 -14.78 9.83 -34.44 -0.34 -15.12 16 17 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 20 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 24 C -0.12 -1.00 5.97 -25.61 -0.15 -1.15 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.31 8.12 -51.93 -0.42 -0.12 16 28 H 0.07 0.44 8.04 -51.93 -0.42 0.02 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 34 H 0.40 6.84 8.32 -40.82 -0.34 6.50 16 35 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 36 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 0.53 7.84 -51.93 -0.41 0.12 16 39 H 0.09 0.93 6.40 -51.93 -0.33 0.59 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -32.74 326.90 -7.14 -39.89 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.05 Total: 1.04 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.82 Total: 3.19 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.43 Total: -39.69 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.96 Total: -25.88 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.74 -7.14 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776427817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.420 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds