Wall clock time and date at job start Mon Mar 30 2020 01:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.42942 * 2 1 4 4 C 1.54887 * 110.49111 * 237.31057 * 2 1 3 5 5 C 1.54968 * 102.77622 * 203.40492 * 4 2 1 6 6 C 1.54262 * 104.16091 * 37.88919 * 5 4 2 7 7 H 1.08998 * 110.03569 * 95.75344 * 6 5 4 8 8 C 1.50706 * 110.02938 * 217.13708 * 6 5 4 9 9 O 1.20824 * 120.00104 * 117.90933 * 8 6 5 10 10 O 1.34230 * 119.99717 * 297.90377 * 8 6 5 11 11 C 1.45199 * 116.99614 * 180.02562 * 10 8 6 12 12 C 1.50703 * 109.46928 * 180.02562 * 11 10 8 13 13 O 1.21278 * 119.99985 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99944 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.46992 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 C 1.53877 * 106.64207 * 336.44389 * 6 5 4 25 25 H 1.09001 * 109.47528 * 297.46197 * 1 2 3 26 26 H 1.08994 * 109.46866 * 57.46876 * 1 2 3 27 27 H 1.09003 * 109.46703 * 177.45980 * 1 2 3 28 28 H 1.08995 * 110.75515 * 321.69543 * 4 2 1 29 29 H 1.08995 * 110.75312 * 84.87798 * 4 2 1 30 30 H 1.09002 * 110.47440 * 279.23136 * 5 4 2 31 31 H 1.08998 * 110.52447 * 156.57004 * 5 4 2 32 32 H 1.09002 * 109.47177 * 60.00180 * 11 10 8 33 33 H 1.09001 * 109.47399 * 300.00009 * 11 10 8 34 34 H 0.97000 * 119.99708 * 359.97438 * 14 12 11 35 35 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 36 36 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 37 37 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 38 38 H 1.08994 * 110.03449 * 119.25922 * 24 6 5 39 39 H 1.09004 * 110.03545 * 240.64733 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0722 -0.7836 -1.2211 5 6 3.4914 -1.2000 -0.7584 6 6 3.3166 -1.5394 0.7362 7 1 3.1696 -2.6122 0.8608 8 6 4.5281 -1.0911 1.5125 9 8 4.4159 -0.2552 2.3777 10 8 5.7317 -1.6205 1.2427 11 6 6.8538 -1.1419 2.0302 12 6 8.1125 -1.8433 1.5891 13 8 8.0684 -2.6653 0.6984 14 7 9.2874 -1.5572 2.1844 15 6 10.5111 -2.2387 1.7552 16 6 11.6757 -1.7421 2.5726 17 1 11.5199 -0.9940 3.3357 18 6 12.9401 -2.2436 2.3468 19 7 13.9563 -1.8105 3.0605 20 14 13.2095 -3.5381 1.0274 21 1 13.5129 -2.8721 -0.2648 22 1 14.3479 -4.4096 1.4142 23 1 11.9822 -4.3615 0.8837 24 6 2.0699 -0.7772 1.2184 25 1 -0.3634 0.4739 0.9119 26 1 -0.3633 0.5526 -0.8664 27 1 -0.3633 -1.0267 -0.0455 28 1 1.4582 -1.6619 -1.4200 29 1 2.1222 -0.1418 -2.1006 30 1 4.1908 -0.3732 -0.8827 31 1 3.8320 -2.0755 -1.3112 32 1 6.6723 -1.3493 3.0848 33 1 6.9673 -0.0675 1.8855 34 1 9.3227 -0.8995 2.8965 35 1 10.6925 -2.0302 0.7008 36 1 10.3980 -3.3133 1.8988 37 1 14.8459 -2.1630 2.9015 38 1 1.3176 -1.4801 1.5761 39 1 2.3409 -0.0836 2.0144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776427817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:35 Heat of formation + Delta-G solvation = -165.915941 kcal Electronic energy + Delta-G solvation = -20074.904196 eV Core-core repulsion = 16787.861288 eV Total energy + Delta-G solvation = -3287.042908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.95905 -40.56058 -39.01558 -37.47489 -36.22070 -34.47817 -32.69681 -31.11277 -29.93047 -28.85172 -26.35300 -24.25917 -23.28701 -21.75885 -21.39961 -20.47355 -19.34913 -18.97375 -18.17016 -17.83358 -17.34375 -16.88680 -16.40782 -16.08703 -15.75702 -15.50217 -14.86749 -14.58642 -14.52100 -14.37753 -13.90629 -13.82754 -13.70904 -13.09966 -12.84709 -12.73287 -12.71133 -12.31992 -11.94737 -11.93640 -11.83151 -11.74449 -11.68446 -11.55730 -11.44757 -11.29850 -10.98601 -10.93342 -10.06326 -8.40996 -6.48800 1.05327 1.23203 1.33327 1.36483 1.47161 1.49499 2.27539 2.46472 2.94306 3.40813 3.52443 3.61545 3.72852 3.97560 4.01318 4.10685 4.31221 4.38531 4.46179 4.53099 4.67572 4.72322 4.73497 4.96015 4.98911 5.01431 5.06761 5.13035 5.21074 5.22694 5.26147 5.37263 5.37725 5.41550 5.55534 6.04375 6.50196 6.56342 6.70583 7.09798 7.25110 8.73572 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051130 B = 0.002970 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.490946 B = 9425.797289 C = 9794.483654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.084 4.084 7 H 0.129 0.871 8 C 0.466 3.534 9 O -0.529 6.529 10 O -0.344 6.344 11 C 0.056 3.944 12 C 0.505 3.495 13 O -0.577 6.577 14 N -0.697 5.697 15 C 0.232 3.768 16 C -0.549 4.549 17 H 0.061 0.939 18 C 0.026 3.974 19 N -0.930 5.930 20 Si 0.938 3.062 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.115 4.115 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.413 0.587 35 H 0.017 0.983 36 H 0.018 0.982 37 H 0.273 0.727 38 H 0.092 0.908 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.952 2.205 -6.425 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.103 4.103 7 H 0.147 0.853 8 C 0.310 3.690 9 O -0.419 6.419 10 O -0.260 6.260 11 C -0.021 4.021 12 C 0.291 3.709 13 O -0.457 6.457 14 N -0.349 5.349 15 C 0.109 3.891 16 C -0.587 4.587 17 H 0.079 0.921 18 C -0.175 4.175 19 N -0.569 5.569 20 Si 0.762 3.238 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.183 1.183 24 C -0.153 4.153 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.249 0.751 35 H 0.034 0.966 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.764 1.855 -6.744 27.663 hybrid contribution 1.068 0.010 0.311 1.112 sum -25.696 1.865 -6.434 26.555 Atomic orbital electron populations 1.21774 0.93432 1.02559 1.02042 1.21989 0.96715 0.98863 0.94112 0.91589 1.22608 0.94158 1.00667 0.97591 1.22368 0.98947 1.02226 0.91675 1.21924 0.88512 1.03988 0.95852 0.85309 1.24494 0.84665 0.78327 0.81507 1.90626 1.86073 1.32336 1.32833 1.86577 1.16758 1.63176 1.59441 1.22724 0.82170 1.00215 0.97018 1.20554 0.85232 0.82812 0.82289 1.90675 1.86913 1.35934 1.32148 1.45873 1.06708 1.43418 1.38872 1.19179 0.82072 0.92796 0.95049 1.21268 0.91962 1.24948 1.20483 0.92105 1.25612 0.95449 0.98325 0.98073 1.69980 1.00720 1.44554 1.41638 0.85846 0.78733 0.79653 0.79608 1.18934 1.19876 1.18257 1.22359 0.94409 0.99553 0.98964 0.92655 0.91973 0.91634 0.89461 0.90367 0.92380 0.89588 0.86088 0.86222 0.75118 0.96558 0.96442 0.91796 0.88928 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.12 71.98 0.66 -0.68 16 2 C -0.10 -1.25 3.46 -9.72 -0.03 -1.29 16 3 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.11 -1.30 6.33 31.91 0.20 -1.10 16 5 C -0.11 -1.83 6.34 31.70 0.20 -1.63 16 6 C -0.08 -1.47 3.41 -10.81 -0.04 -1.51 16 7 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 8 C 0.47 11.68 7.10 71.24 0.51 12.19 16 9 O -0.53 -15.17 14.96 21.97 0.33 -14.84 16 10 O -0.34 -10.07 9.73 -45.07 -0.44 -10.51 16 11 C 0.06 1.55 5.94 71.24 0.42 1.98 16 12 C 0.51 18.84 7.91 87.66 0.69 19.54 16 13 O -0.58 -26.32 16.50 15.78 0.26 -26.06 16 14 N -0.70 -27.23 5.55 -466.78 -2.59 -29.82 16 15 C 0.23 11.18 4.50 85.63 0.38 11.57 16 16 C -0.55 -29.87 9.83 25.60 0.25 -29.61 16 17 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 18 C 0.03 1.45 5.47 84.66 0.46 1.91 16 19 N -0.93 -55.16 13.96 21.45 0.30 -54.86 16 20 Si 0.94 43.46 27.47 68.60 1.88 45.35 16 21 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.26 -11.81 6.54 99.48 0.65 -11.16 16 24 C -0.12 -1.75 5.97 31.32 0.19 -1.57 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.52 8.12 -2.39 -0.02 0.50 16 28 H 0.09 0.78 8.04 -2.39 -0.02 0.76 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 1.09 7.85 -2.39 -0.02 1.07 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.12 2.87 8.13 -2.39 -0.02 2.85 16 33 H 0.12 2.86 8.13 -2.39 -0.02 2.84 16 34 H 0.41 13.82 8.32 -92.71 -0.77 13.04 16 35 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 36 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 37 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.09 1.08 7.84 -2.39 -0.02 1.06 16 39 H 0.07 1.39 6.40 -2.38 -0.02 1.37 16 Total: -1.00 -69.81 326.90 3.86 -65.95 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.22 Total: 14.99 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 3.90 Total: 9.80 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -2.29 Total: -84.68 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: 0.15 Total: -51.40 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.35 kcal Total: -69.81 3.86 -65.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776427817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.963 kcal (2) G-P(sol) polarization free energy of solvation -69.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds