Wall clock time and date at job start Mon Mar 30 2020 01:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.43354 * 2 1 4 4 C 1.54889 * 110.48803 * 122.54463 * 2 1 3 5 5 C 1.54896 * 102.74670 * 156.62068 * 4 2 1 6 6 C 1.54266 * 104.19615 * 322.05717 * 5 4 2 7 7 H 1.09000 * 110.02985 * 264.28034 * 6 5 4 8 8 C 1.50703 * 110.03360 * 142.89655 * 6 5 4 9 9 O 1.20822 * 119.99784 * 241.45687 * 8 6 5 10 10 O 1.34231 * 119.99784 * 61.45158 * 8 6 5 11 11 C 1.45194 * 116.99895 * 180.02562 * 10 8 6 12 12 C 1.50703 * 109.47234 * 179.97438 * 11 10 8 13 13 O 1.21273 * 119.99926 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00072 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00180 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47260 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27562 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.53873 * 106.59690 * 23.60995 * 6 5 4 25 25 H 1.09002 * 109.46887 * 298.90824 * 1 2 3 26 26 H 1.08997 * 109.46837 * 58.91200 * 1 2 3 27 27 H 1.09001 * 109.46769 * 178.90805 * 1 2 3 28 28 H 1.09005 * 110.75395 * 38.30912 * 4 2 1 29 29 H 1.08989 * 110.75556 * 274.93324 * 4 2 1 30 30 H 1.09000 * 110.48485 * 203.38274 * 5 4 2 31 31 H 1.08991 * 110.59739 * 80.79332 * 5 4 2 32 32 H 1.09009 * 109.47307 * 60.00285 * 11 10 8 33 33 H 1.08998 * 109.47074 * 300.00299 * 11 10 8 34 34 H 0.97002 * 120.00040 * 359.97438 * 14 12 11 35 35 H 1.09000 * 109.47197 * 59.99093 * 15 14 12 36 36 H 1.09007 * 109.46342 * 299.99665 * 15 14 12 37 37 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 38 38 H 1.09007 * 110.03261 * 119.29001 * 24 6 5 39 39 H 1.09003 * 110.03163 * 240.70988 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0722 -0.7805 1.2231 5 6 3.4908 -1.1970 0.7613 6 6 3.3166 -1.5413 -0.7323 7 1 3.1701 -2.6147 -0.8534 8 6 4.5281 -1.0951 -1.5097 9 8 4.4139 -0.2705 -2.3854 10 8 5.7340 -1.6137 -1.2292 11 6 6.8561 -1.1370 -2.0177 12 6 8.1175 -1.8254 -1.5637 13 8 8.0749 -2.6380 -0.6645 14 7 9.2930 -1.5379 -2.1570 15 6 10.5192 -2.2074 -1.7160 16 6 11.6841 -1.7117 -2.5335 17 1 11.5267 -0.9721 -3.3047 18 6 12.9497 -2.2068 -2.3011 19 7 13.1413 -3.1075 -1.3622 20 14 14.3923 -1.5980 -3.3197 21 1 13.9148 -0.5932 -4.3033 22 1 15.4017 -0.9755 -2.4258 23 1 15.0074 -2.7417 -4.0400 24 6 2.0699 -0.7803 -1.2163 25 1 -0.3633 0.4968 0.8996 26 1 -0.3633 0.5306 -0.8801 27 1 -0.3633 -1.0275 -0.0196 28 1 1.4581 -1.6584 1.4242 29 1 2.1253 -0.1357 2.1002 30 1 3.8317 -2.0706 1.3169 31 1 4.1916 -0.3712 0.8832 32 1 6.9623 -0.0603 -1.8849 33 1 6.6801 -1.3576 -3.0705 34 1 9.3271 -0.8882 -2.8765 35 1 10.4133 -3.2841 -1.8491 36 1 10.6948 -1.9870 -0.6630 37 1 14.0316 -3.4561 -1.1989 38 1 2.3411 -0.0881 -2.0136 39 1 1.3176 -1.4841 -1.5724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776427818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:38 Heat of formation + Delta-G solvation = -149.245020 kcal Electronic energy + Delta-G solvation = -20019.454333 eV Core-core repulsion = 16733.134330 eV Total energy + Delta-G solvation = -3286.320002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84459 -38.95425 -38.09051 -36.28146 -34.25629 -32.42650 -31.98555 -29.45901 -28.98374 -26.81329 -25.58058 -22.91345 -22.20027 -20.66183 -19.95605 -19.62997 -17.98773 -17.46343 -16.64245 -16.49228 -15.65186 -15.31569 -15.11839 -14.90646 -14.43889 -14.17313 -13.91391 -13.28955 -13.15013 -12.95473 -12.58503 -12.29265 -12.02195 -11.90840 -11.77139 -11.58097 -11.18834 -11.04486 -10.99916 -10.95277 -10.93968 -10.76718 -10.69219 -10.39966 -10.35517 -9.43387 -9.18232 -8.79786 -7.99838 -6.20777 -4.28134 2.12398 2.44199 3.17226 3.21632 3.28882 3.31933 3.94757 4.15385 4.24100 4.32494 4.49516 4.81456 4.96237 5.01795 5.13325 5.15105 5.15453 5.21693 5.23033 5.28594 5.32373 5.34090 5.52320 5.59929 5.68352 5.76250 5.85192 5.89370 6.04670 6.12087 6.37997 7.21604 7.30051 7.44635 7.58550 7.69600 7.90802 8.49123 8.70317 8.95619 9.38374 10.89419 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.057744 B = 0.002789 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.782036 B =10035.668569 C =10325.521638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.076 0.924 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.085 4.085 7 H 0.112 0.888 8 C 0.465 3.535 9 O -0.512 6.512 10 O -0.326 6.326 11 C 0.047 3.953 12 C 0.500 3.500 13 O -0.534 6.534 14 N -0.707 5.707 15 C 0.251 3.749 16 C -0.544 4.544 17 H 0.065 0.935 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.118 4.118 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.393 0.607 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.090 0.910 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.804 5.717 1.504 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.104 4.104 7 H 0.130 0.870 8 C 0.308 3.692 9 O -0.400 6.400 10 O -0.241 6.241 11 C -0.030 4.030 12 C 0.282 3.718 13 O -0.411 6.411 14 N -0.357 5.357 15 C 0.131 3.869 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.733 3.267 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.155 4.155 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.226 0.774 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.650 5.241 1.981 23.333 hybrid contribution 1.042 0.643 -1.070 1.626 sum -21.608 5.884 0.911 22.414 Atomic orbital electron populations 1.21795 0.94738 1.01857 1.01697 1.21996 0.95662 0.99542 0.94515 0.90565 1.22610 0.95435 1.00077 0.97639 1.22331 0.97884 1.02643 0.92212 1.21706 0.89919 1.02878 0.95884 0.87026 1.23788 0.84834 0.78728 0.81804 1.90625 1.86073 1.31880 1.31438 1.86581 1.15870 1.63031 1.58595 1.22870 0.84269 0.99931 0.95971 1.19893 0.84420 0.83644 0.83801 1.90705 1.86247 1.34293 1.29890 1.46370 1.07909 1.43949 1.37485 1.19183 0.78569 0.93127 0.96072 1.21243 0.92164 1.25134 1.19728 0.91716 1.24957 0.99000 0.94737 0.95342 1.69980 1.22873 1.28345 1.30991 0.86334 0.81862 0.78665 0.79889 1.19608 1.20754 1.20764 1.22349 0.94588 0.99560 0.99052 0.92608 0.92635 0.92522 0.90916 0.91066 0.89868 0.90914 0.88610 0.88581 0.77431 0.95254 0.95253 0.92417 0.89161 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.12 37.16 0.34 -0.54 16 2 C -0.10 -0.75 3.46 -88.96 -0.31 -1.05 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -0.87 6.33 -24.73 -0.16 -1.03 16 5 C -0.11 -1.04 6.33 -25.07 -0.16 -1.20 16 6 C -0.08 -0.85 3.41 -90.65 -0.31 -1.16 16 7 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 8 C 0.47 6.35 7.11 36.01 0.26 6.61 16 9 O -0.51 -7.80 14.96 -18.75 -0.28 -8.08 16 10 O -0.33 -5.20 9.72 -45.91 -0.45 -5.65 16 11 C 0.05 0.73 5.94 36.01 0.21 0.94 16 12 C 0.50 10.08 7.91 -10.98 -0.09 10.00 16 13 O -0.53 -13.10 16.50 -14.10 -0.23 -13.33 16 14 N -0.71 -14.69 5.55 -61.47 -0.34 -15.03 16 15 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 16 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 17 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.84 13.29 55.43 0.74 -25.10 16 20 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.12 -1.04 5.97 -25.61 -0.15 -1.19 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.32 8.11 -51.93 -0.42 -0.10 16 28 H 0.07 0.46 8.06 -51.93 -0.42 0.05 16 29 H 0.07 0.47 8.14 -51.94 -0.42 0.05 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 32 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 33 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 34 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.09 0.95 6.40 -51.93 -0.33 0.62 16 39 H 0.07 0.55 7.81 -51.93 -0.41 0.15 16 LS Contribution 330.47 15.07 4.98 4.98 Total: -1.00 -32.76 330.47 -7.50 -40.26 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.08 Total: 1.65 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -0.81 Total: 4.65 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.40 Total: -40.13 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.96 Total: -27.06 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.76 -7.50 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776427818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.987 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds