Wall clock time and date at job start Mon Mar 30 2020 01:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 110.43106 * 2 1 4 4 C 1.54261 * 110.48412 * 122.54356 * 2 1 3 5 5 C 1.53877 * 106.59840 * 142.28568 * 4 2 1 6 6 C 1.54265 * 106.59604 * 0.02562 * 5 4 2 7 7 H 1.09007 * 110.48913 * 95.19801 * 6 5 4 8 8 C 1.50706 * 110.48687 * 217.70907 * 6 5 4 9 9 O 1.20824 * 120.00104 * 118.54364 * 8 6 5 10 10 O 1.34230 * 119.99717 * 298.54920 * 8 6 5 11 11 C 1.45199 * 116.99614 * 179.97438 * 10 8 6 12 12 C 1.50703 * 109.46928 * 179.97438 * 11 10 8 13 13 O 1.21278 * 119.99985 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00271 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47174 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00129 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47431 * 59.99843 * 20 18 16 22 22 H 1.48503 * 109.46954 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47295 * 299.99446 * 20 18 16 24 24 C 1.54889 * 110.48242 * 237.31955 * 2 1 3 25 25 H 1.09004 * 109.46899 * 298.91079 * 1 2 3 26 26 H 1.09004 * 109.47144 * 58.90883 * 1 2 3 27 27 H 1.08994 * 109.46934 * 178.91115 * 1 2 3 28 28 H 1.08996 * 110.03465 * 23.00247 * 4 2 1 29 29 H 1.08997 * 110.07112 * 261.59181 * 4 2 1 30 30 H 1.08993 * 110.03769 * 240.71497 * 5 4 2 31 31 H 1.08997 * 110.07048 * 119.30161 * 5 4 2 32 32 H 1.09002 * 109.47177 * 299.99820 * 11 10 8 33 33 H 1.09001 * 109.47399 * 59.99991 * 11 10 8 34 34 H 0.97005 * 119.99463 * 359.97438 * 14 12 11 35 35 H 1.09002 * 109.47021 * 299.99722 * 15 14 12 36 36 H 1.09001 * 109.47001 * 59.99554 * 15 14 12 37 37 H 0.97002 * 119.99768 * 180.02562 * 19 18 16 38 38 H 1.08997 * 110.75679 * 85.06499 * 24 2 1 39 39 H 1.09001 * 110.75764 * 321.69312 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0699 -0.7774 1.2182 5 6 3.3165 -1.5397 0.7359 6 6 3.4910 -1.1984 -0.7584 7 1 4.1921 -0.3729 -0.8819 8 6 3.9623 -2.4079 -1.5241 9 8 3.2801 -2.8655 -2.4101 10 8 5.1399 -2.9767 -1.2217 11 6 5.5298 -4.1387 -2.0001 12 6 6.8696 -4.6367 -1.5225 13 8 7.4399 -4.0680 -0.6158 14 7 7.4346 -5.7135 -2.1038 15 6 8.7367 -6.1980 -1.6392 16 6 9.1414 -7.4040 -2.4472 17 1 8.4934 -7.7729 -3.2283 18 6 10.3387 -8.0370 -2.1884 19 7 11.1276 -7.5880 -1.2368 20 14 10.8400 -9.5323 -3.1894 21 1 10.9343 -9.1589 -4.6237 22 1 12.1600 -10.0233 -2.7185 23 1 9.8248 -10.6030 -3.0223 24 6 2.0721 -0.7835 -1.2213 25 1 -0.3633 0.4968 0.8996 26 1 -0.3633 0.5307 -0.8801 27 1 -0.3633 -1.0274 -0.0195 28 1 1.3176 -1.4803 1.5758 29 1 2.3411 -0.0839 2.0142 30 1 3.1692 -2.6125 0.8595 31 1 4.1931 -1.2163 1.2971 32 1 4.7848 -4.9248 -1.8776 33 1 5.5988 -3.8644 -3.0528 34 1 6.9786 -6.1681 -2.8293 35 1 9.4816 -5.4117 -1.7613 36 1 8.6676 -6.4727 -0.5866 37 1 11.9701 -8.0332 -1.0550 38 1 2.1251 -0.1407 -2.1000 39 1 1.4580 -1.6618 -1.4203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776427819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:40 Heat of formation + Delta-G solvation = -150.101073 kcal Electronic energy + Delta-G solvation = -19988.351955 eV Core-core repulsion = 16701.994832 eV Total energy + Delta-G solvation = -3286.357124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.79355 -38.94265 -38.13185 -36.27466 -34.25223 -32.42299 -31.99378 -29.47049 -28.98942 -26.81707 -25.61158 -22.93696 -22.23727 -20.22840 -20.13075 -19.92247 -17.69118 -17.44754 -16.83589 -16.25003 -16.03185 -15.45153 -15.11866 -14.64462 -14.38815 -14.01168 -13.83769 -13.58302 -13.16182 -12.91315 -12.63995 -12.35114 -12.00017 -11.91460 -11.76462 -11.54204 -11.21117 -11.13213 -11.04094 -10.94743 -10.90764 -10.76611 -10.67616 -10.39797 -10.35029 -9.46370 -9.17805 -8.78540 -7.99482 -6.20133 -4.27699 2.12681 2.44599 3.17560 3.23817 3.28698 3.30156 3.93829 4.12567 4.22740 4.32817 4.49003 4.83331 4.95116 4.98096 5.06638 5.15840 5.17877 5.19572 5.24060 5.25855 5.30562 5.34347 5.49657 5.54753 5.68785 5.77832 5.83197 5.93541 5.97424 6.11843 6.37084 7.21796 7.30260 7.45020 7.58470 7.70136 7.91351 8.49372 8.70379 8.95822 9.38633 10.89958 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.057406 B = 0.002775 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.639014 B =10088.272367 C =10382.451707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.120 4.120 5 C -0.114 4.114 6 C -0.086 4.086 7 H 0.114 0.886 8 C 0.467 3.533 9 O -0.512 6.512 10 O -0.327 6.327 11 C 0.047 3.953 12 C 0.499 3.501 13 O -0.534 6.534 14 N -0.707 5.707 15 C 0.251 3.749 16 C -0.546 4.546 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.906 3.094 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.103 4.103 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.393 0.607 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.267 0.733 38 H 0.074 0.926 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.302 13.579 1.218 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.096 0.904 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.105 4.105 7 H 0.132 0.868 8 C 0.309 3.691 9 O -0.400 6.400 10 O -0.242 6.242 11 C -0.030 4.030 12 C 0.282 3.718 13 O -0.411 6.411 14 N -0.357 5.357 15 C 0.131 3.869 16 C -0.584 4.584 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.733 3.267 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.141 4.141 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.226 0.774 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.845 13.771 1.720 23.404 hybrid contribution 0.207 -1.218 -1.051 1.622 sum -18.638 12.553 0.669 22.482 Atomic orbital electron populations 1.21797 0.94632 1.02036 1.01681 1.21988 0.95869 0.99338 0.94489 0.90389 1.22240 0.96907 0.98973 0.97686 1.22098 0.99204 1.01302 0.92519 1.21951 0.98983 0.93692 0.95921 0.86774 1.23753 0.78765 0.84657 0.81879 1.90651 1.55626 1.62995 1.30720 1.86585 1.36915 1.42289 1.58393 1.22864 0.96766 0.87310 0.96091 1.19897 0.86011 0.81934 0.83919 1.90706 1.63789 1.57142 1.29506 1.46370 1.23605 1.28657 1.37081 1.19170 0.77574 0.94325 0.95811 1.21171 1.05167 1.12790 1.19295 0.91822 1.24954 0.96011 0.97747 0.95280 1.69963 1.11564 1.40490 1.30174 0.86443 0.77856 0.82254 0.80171 1.20031 1.21039 1.20029 1.22556 0.93020 1.00753 0.97724 0.92565 0.92572 0.92463 0.91326 0.91292 0.91106 0.90045 0.88613 0.88590 0.77438 0.95258 0.95269 0.92307 0.90746 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.11 37.16 0.34 -0.55 16 2 C -0.10 -0.68 3.46 -88.96 -0.31 -0.99 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.12 -0.88 6.37 -25.61 -0.16 -1.04 16 5 C -0.11 -1.05 6.34 -25.61 -0.16 -1.21 16 6 C -0.09 -0.87 3.37 -90.10 -0.30 -1.17 16 7 H 0.11 0.99 8.14 -51.92 -0.42 0.57 16 8 C 0.47 6.38 7.12 36.01 0.26 6.64 16 9 O -0.51 -7.85 15.51 -18.75 -0.29 -8.14 16 10 O -0.33 -5.23 9.73 -45.90 -0.45 -5.68 16 11 C 0.05 0.73 5.94 36.01 0.21 0.95 16 12 C 0.50 10.10 7.91 -10.98 -0.09 10.01 16 13 O -0.53 -13.12 16.50 -14.10 -0.23 -13.35 16 14 N -0.71 -14.71 5.55 -61.47 -0.34 -15.05 16 15 C 0.25 6.59 5.43 -5.20 -0.03 6.57 16 16 C -0.55 -14.65 9.28 -34.44 -0.32 -14.97 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.88 -25.86 13.29 55.43 0.74 -25.12 16 20 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 24 C -0.10 -0.89 5.33 -24.72 -0.13 -1.02 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.73 7.83 -51.93 -0.41 0.32 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 33 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 34 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.83 7.44 -51.93 -0.39 0.44 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -32.82 331.58 -7.54 -40.35 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.15 Total: 1.44 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.79 Total: 4.88 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.40 Total: -40.17 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.97 Total: -27.17 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.82 -7.54 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776427819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.748 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds