Wall clock time and date at job start Mon Mar 30 2020 01:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 110.43106 * 2 1 4 4 C 1.54261 * 110.48412 * 122.54356 * 2 1 3 5 5 C 1.53877 * 106.59840 * 142.28568 * 4 2 1 6 6 C 1.54265 * 106.59604 * 0.02562 * 5 4 2 7 7 H 1.09007 * 110.48913 * 95.19801 * 6 5 4 8 8 C 1.50706 * 110.48687 * 217.70907 * 6 5 4 9 9 O 1.20824 * 120.00104 * 118.54364 * 8 6 5 10 10 O 1.34230 * 119.99717 * 298.54920 * 8 6 5 11 11 C 1.45199 * 116.99614 * 179.97438 * 10 8 6 12 12 C 1.50703 * 109.46928 * 179.97438 * 11 10 8 13 13 O 1.21278 * 119.99985 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00271 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47174 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00129 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47431 * 59.99843 * 20 18 16 22 22 H 1.48503 * 109.46954 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47295 * 299.99446 * 20 18 16 24 24 C 1.54889 * 110.48242 * 237.31955 * 2 1 3 25 25 H 1.09004 * 109.46899 * 298.91079 * 1 2 3 26 26 H 1.09004 * 109.47144 * 58.90883 * 1 2 3 27 27 H 1.08994 * 109.46934 * 178.91115 * 1 2 3 28 28 H 1.08996 * 110.03465 * 23.00247 * 4 2 1 29 29 H 1.08997 * 110.07112 * 261.59181 * 4 2 1 30 30 H 1.08993 * 110.03769 * 240.71497 * 5 4 2 31 31 H 1.08997 * 110.07048 * 119.30161 * 5 4 2 32 32 H 1.09002 * 109.47177 * 299.99820 * 11 10 8 33 33 H 1.09001 * 109.47399 * 59.99991 * 11 10 8 34 34 H 0.97005 * 119.99463 * 359.97438 * 14 12 11 35 35 H 1.09002 * 109.47021 * 299.99722 * 15 14 12 36 36 H 1.09001 * 109.47001 * 59.99554 * 15 14 12 37 37 H 0.97002 * 119.99768 * 180.02562 * 19 18 16 38 38 H 1.08997 * 110.75679 * 85.06499 * 24 2 1 39 39 H 1.09001 * 110.75764 * 321.69312 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0699 -0.7774 1.2182 5 6 3.3165 -1.5397 0.7359 6 6 3.4910 -1.1984 -0.7584 7 1 4.1921 -0.3729 -0.8819 8 6 3.9623 -2.4079 -1.5241 9 8 3.2801 -2.8655 -2.4101 10 8 5.1399 -2.9767 -1.2217 11 6 5.5298 -4.1387 -2.0001 12 6 6.8696 -4.6367 -1.5225 13 8 7.4399 -4.0680 -0.6158 14 7 7.4346 -5.7135 -2.1038 15 6 8.7367 -6.1980 -1.6392 16 6 9.1414 -7.4040 -2.4472 17 1 8.4934 -7.7729 -3.2283 18 6 10.3387 -8.0370 -2.1884 19 7 11.1276 -7.5880 -1.2368 20 14 10.8400 -9.5323 -3.1894 21 1 10.9343 -9.1589 -4.6237 22 1 12.1600 -10.0233 -2.7185 23 1 9.8248 -10.6030 -3.0223 24 6 2.0721 -0.7835 -1.2213 25 1 -0.3633 0.4968 0.8996 26 1 -0.3633 0.5307 -0.8801 27 1 -0.3633 -1.0274 -0.0195 28 1 1.3176 -1.4803 1.5758 29 1 2.3411 -0.0839 2.0142 30 1 3.1692 -2.6125 0.8595 31 1 4.1931 -1.2163 1.2971 32 1 4.7848 -4.9248 -1.8776 33 1 5.5988 -3.8644 -3.0528 34 1 6.9786 -6.1681 -2.8293 35 1 9.4816 -5.4117 -1.7613 36 1 8.6676 -6.4727 -0.5866 37 1 11.9701 -8.0332 -1.0550 38 1 2.1251 -0.1407 -2.1000 39 1 1.4580 -1.6618 -1.4203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776427819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:39 Heat of formation + Delta-G solvation = -170.657361 kcal Electronic energy + Delta-G solvation = -19989.243343 eV Core-core repulsion = 16701.994832 eV Total energy + Delta-G solvation = -3287.248511 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.91458 -40.49998 -39.03574 -37.47394 -36.19957 -34.43195 -32.68836 -30.82670 -29.90745 -28.55202 -26.39466 -24.68006 -23.38743 -21.67351 -21.08322 -20.82348 -19.22502 -18.69254 -18.02430 -17.76281 -17.11123 -16.94218 -16.78316 -16.05995 -15.99441 -14.93660 -14.78316 -14.54104 -14.41815 -14.13319 -14.01603 -13.79252 -13.61833 -13.11544 -12.96623 -12.69090 -12.62988 -12.27091 -12.24927 -11.94073 -11.83182 -11.79219 -11.58966 -11.53215 -11.48629 -11.22343 -10.92570 -10.81689 -9.95070 -8.30366 -6.47222 1.05074 1.26070 1.44162 1.47301 1.52920 1.55848 2.33251 2.55781 3.04684 3.37325 3.51087 3.64637 3.75539 3.97604 4.02307 4.13872 4.28588 4.35147 4.43626 4.49565 4.66488 4.75376 4.87606 5.01156 5.04817 5.09008 5.14636 5.20291 5.24587 5.26367 5.34188 5.37053 5.40177 5.57576 5.61535 5.80800 6.55665 6.61559 6.76630 7.18925 7.33808 8.81531 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.057406 B = 0.002775 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.639014 B =10088.272367 C =10382.451707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.091 0.909 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.087 4.087 7 H 0.131 0.869 8 C 0.467 3.533 9 O -0.529 6.529 10 O -0.347 6.347 11 C 0.058 3.942 12 C 0.500 3.500 13 O -0.583 6.583 14 N -0.699 5.699 15 C 0.267 3.733 16 C -0.558 4.558 17 H 0.086 0.914 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.986 3.014 21 H -0.262 1.262 22 H -0.286 1.286 23 H -0.262 1.262 24 C -0.101 4.101 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.412 0.588 35 H -0.007 1.007 36 H -0.008 1.008 37 H 0.269 0.731 38 H 0.081 0.919 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.928 13.625 -0.034 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.110 0.890 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.105 4.105 7 H 0.149 0.851 8 C 0.312 3.688 9 O -0.418 6.418 10 O -0.263 6.263 11 C -0.019 4.019 12 C 0.285 3.715 13 O -0.463 6.463 14 N -0.350 5.350 15 C 0.144 3.856 16 C -0.596 4.596 17 H 0.104 0.896 18 C -0.195 4.195 19 N -0.568 5.568 20 Si 0.809 3.191 21 H -0.187 1.187 22 H -0.211 1.211 23 H -0.187 1.187 24 C -0.138 4.138 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.249 0.751 35 H 0.011 0.989 36 H 0.010 0.990 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.527 13.820 0.436 24.749 hybrid contribution 0.683 -1.174 -0.625 1.496 sum -19.843 12.645 -0.189 23.531 Atomic orbital electron populations 1.21792 0.93961 1.01885 1.02437 1.21987 0.96378 0.99590 0.93132 0.89033 1.22237 0.95869 0.99084 0.98231 1.22124 1.00332 1.00720 0.92099 1.22169 1.00038 0.92446 0.95890 0.85128 1.24454 0.77648 0.85000 0.81729 1.90637 1.55813 1.63689 1.31661 1.86593 1.38259 1.42476 1.58934 1.22731 0.93931 0.88299 0.96909 1.20683 0.87290 0.80801 0.82685 1.90681 1.65515 1.58461 1.31666 1.46053 1.22101 1.29201 1.37686 1.18630 0.79281 0.93526 0.94137 1.21577 1.05722 1.12686 1.19624 0.89623 1.26061 0.95958 1.01205 0.96326 1.70125 1.12169 1.42343 1.32164 0.85195 0.77408 0.77914 0.78628 1.18672 1.21125 1.18672 1.22566 0.91802 1.00527 0.98915 0.91561 0.92104 0.93085 0.91215 0.89943 0.92623 0.90072 0.86101 0.85964 0.75138 0.98949 0.98969 0.92172 0.90010 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.11 71.99 0.66 -0.80 16 2 C -0.09 -1.07 3.46 -9.72 -0.03 -1.11 16 3 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.49 6.37 31.32 0.20 -1.29 16 5 C -0.11 -2.02 6.34 31.32 0.20 -1.82 16 6 C -0.09 -1.63 3.37 -10.45 -0.04 -1.66 16 7 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 8 C 0.47 12.30 7.12 71.24 0.51 12.81 16 9 O -0.53 -15.53 15.51 21.97 0.34 -15.19 16 10 O -0.35 -10.87 9.73 -45.07 -0.44 -11.31 16 11 C 0.06 1.73 5.94 71.24 0.42 2.15 16 12 C 0.50 20.33 7.91 87.66 0.69 21.02 16 13 O -0.58 -29.60 16.50 15.78 0.26 -29.34 16 14 N -0.70 -29.17 5.55 -466.79 -2.59 -31.76 16 15 C 0.27 14.48 5.43 85.63 0.46 14.94 16 16 C -0.56 -29.97 9.28 25.60 0.24 -29.73 16 17 H 0.09 4.12 7.60 -2.91 -0.02 4.09 16 18 C 0.00 0.24 5.46 84.66 0.46 0.70 16 19 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 20 Si 0.99 41.89 29.54 68.60 2.03 43.92 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 24 C -0.10 -1.58 5.33 31.89 0.17 -1.41 16 25 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.88 7.84 -2.39 -0.02 0.86 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 1.13 7.83 -2.39 -0.02 1.12 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.12 3.02 8.13 -2.39 -0.02 3.01 16 33 H 0.12 3.04 8.13 -2.39 -0.02 3.02 16 34 H 0.41 13.87 8.32 -92.70 -0.77 13.10 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.29 7.44 -2.39 -0.02 1.27 16 Total: -1.00 -72.69 331.58 4.10 -68.60 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.27 Total: 16.60 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 3.94 Total: 13.81 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -2.30 Total: -87.10 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: 0.16 Total: -55.83 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -72.69 4.10 -68.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776427819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.060 kcal (2) G-P(sol) polarization free energy of solvation -72.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds