Wall clock time and date at job start Mon Mar 30 2020 01:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.53807 * 2 1 4 4 C 1.54265 * 110.48514 * 237.39010 * 2 1 3 5 5 C 1.53877 * 106.59605 * 217.71057 * 4 2 1 6 6 C 1.54463 * 106.68421 * 0.15594 * 5 4 2 7 7 H 1.09003 * 110.40626 * 264.75463 * 6 5 4 8 8 C 1.50709 * 110.65945 * 142.05352 * 6 5 4 9 9 O 1.20826 * 119.99986 * 245.23989 * 8 6 5 10 10 O 1.34225 * 119.99667 * 65.24146 * 8 6 5 11 11 C 1.45208 * 116.99716 * 180.02562 * 10 8 6 12 12 C 1.50696 * 109.46972 * 179.97438 * 11 10 8 13 13 O 1.21284 * 120.00488 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99844 * 179.97438 * 12 11 10 15 15 C 1.46495 * 119.99943 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47274 * 180.02562 * 15 14 12 17 17 H 1.07994 * 119.99754 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99998 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00573 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99778 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47081 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46899 * 120.00154 * 20 18 16 23 23 H 1.48500 * 109.47251 * 239.99868 * 20 18 16 24 24 C 1.54887 * 110.48663 * 122.60992 * 2 1 3 25 25 H 1.09003 * 109.46875 * 297.38667 * 1 2 3 26 26 H 1.09002 * 109.47508 * 57.38536 * 1 2 3 27 27 H 1.09000 * 109.47112 * 177.38719 * 1 2 3 28 28 H 1.08995 * 110.03137 * 336.98981 * 4 2 1 29 29 H 1.08993 * 110.03408 * 98.42715 * 4 2 1 30 30 H 1.08999 * 110.03493 * 119.28247 * 5 4 2 31 31 H 1.09003 * 110.03187 * 240.66884 * 5 4 2 32 32 H 1.09006 * 109.46799 * 299.99736 * 11 10 8 33 33 H 1.08993 * 109.46908 * 59.99479 * 11 10 8 34 34 H 0.97002 * 119.99806 * 0.02562 * 14 12 11 35 35 H 1.09006 * 109.47061 * 299.99674 * 15 14 12 36 36 H 1.09001 * 109.47840 * 59.99735 * 15 14 12 37 37 H 0.96995 * 120.00739 * 179.97438 * 19 18 16 38 38 H 1.09002 * 110.75856 * 274.93753 * 24 2 1 39 39 H 1.09006 * 110.75640 * 38.12739 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0699 -0.7788 -1.2173 5 6 3.3165 -1.5405 -0.7341 6 6 3.4905 -1.2020 0.7629 7 1 4.1917 -0.3767 0.8870 8 6 3.9568 -2.4119 1.5310 9 8 3.2417 -2.9079 2.3692 10 8 5.1664 -2.9385 1.2838 11 6 5.5493 -4.1038 2.0609 12 6 6.9277 -4.5520 1.6482 13 8 7.5284 -3.9485 0.7846 14 7 7.4933 -5.6229 2.2396 15 6 8.8334 -6.0582 1.8389 16 6 9.2309 -7.2677 2.6453 17 1 8.5531 -7.6714 3.3828 18 6 10.4597 -7.8588 2.4414 19 7 11.2848 -7.3675 1.5429 20 14 10.9525 -9.3576 3.4415 21 1 9.8553 -9.7106 4.3778 22 1 11.2095 -10.4997 2.5278 23 1 12.1844 -9.0544 4.2134 24 6 2.0721 -0.7819 1.2222 25 1 -0.3633 0.4727 0.9125 26 1 -0.3634 0.5539 -0.8656 27 1 -0.3633 -1.0266 -0.0468 28 1 1.3176 -1.4822 -1.5740 29 1 2.3411 -0.0857 -2.0136 30 1 3.1693 -2.6135 -0.8564 31 1 4.1927 -1.2176 -1.2965 32 1 5.5519 -3.8489 3.1207 33 1 4.8371 -4.9094 1.8826 34 1 7.0130 -6.1054 2.9306 35 1 8.8308 -6.3134 0.7791 36 1 9.5457 -5.2525 2.0167 37 1 12.1495 -7.7831 1.3997 38 1 2.1251 -0.1381 2.1002 39 1 1.4562 -1.6583 1.4243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776427820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:42 Heat of formation + Delta-G solvation = -150.203451 kcal Electronic energy + Delta-G solvation = -19978.519702 eV Core-core repulsion = 16692.158139 eV Total energy + Delta-G solvation = -3286.361563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.79112 -38.94303 -38.12883 -36.27114 -34.25358 -32.42464 -31.98551 -29.48543 -28.99184 -26.81845 -25.61294 -22.94945 -22.24112 -20.22645 -20.12510 -19.92078 -17.71146 -17.45509 -16.82387 -16.25378 -16.03473 -15.45833 -15.12163 -14.63067 -14.38832 -14.01712 -13.83905 -13.58290 -13.15975 -12.92176 -12.64270 -12.35402 -12.01705 -11.92360 -11.76796 -11.53996 -11.21331 -11.11926 -10.99910 -10.95841 -10.93627 -10.77452 -10.68111 -10.40440 -10.35419 -9.43250 -9.17978 -8.79666 -7.99664 -6.20632 -4.28018 2.12217 2.44437 3.17399 3.21717 3.28940 3.32016 3.93841 4.12716 4.22111 4.32501 4.48811 4.83103 4.95026 4.97916 5.06263 5.15561 5.17706 5.19597 5.23955 5.25795 5.30021 5.34253 5.48858 5.54480 5.68646 5.76753 5.82961 5.93049 5.96736 6.11698 6.36991 7.21748 7.30256 7.44773 7.58737 7.70090 7.90921 8.49285 8.70467 8.95810 9.38486 10.89557 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.058304 B = 0.002764 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.126443 B =10128.999833 C =10418.127002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.087 4.087 7 H 0.114 0.886 8 C 0.467 3.533 9 O -0.511 6.511 10 O -0.327 6.327 11 C 0.047 3.953 12 C 0.499 3.501 13 O -0.534 6.534 14 N -0.707 5.707 15 C 0.251 3.749 16 C -0.544 4.544 17 H 0.065 0.935 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.104 4.104 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.393 0.607 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.073 0.927 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.705 13.073 -1.904 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.096 0.904 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.106 4.106 7 H 0.132 0.868 8 C 0.310 3.690 9 O -0.400 6.400 10 O -0.242 6.242 11 C -0.030 4.030 12 C 0.282 3.718 13 O -0.411 6.411 14 N -0.357 5.357 15 C 0.130 3.870 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.142 4.142 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.226 0.774 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.238 13.288 -2.371 23.501 hybrid contribution 0.209 -1.230 1.020 1.612 sum -19.029 12.058 -1.351 22.568 Atomic orbital electron populations 1.21794 0.94612 1.02025 1.01699 1.21983 0.95866 0.99338 0.94466 0.90388 1.22240 0.96883 0.98952 0.97698 1.22126 0.99228 1.01269 0.92433 1.21959 0.99017 0.93740 0.95872 0.86837 1.23730 0.79158 0.84845 0.81275 1.90650 1.55332 1.61186 1.32804 1.86586 1.34431 1.42960 1.60213 1.22865 0.96483 0.87343 0.96336 1.19898 0.86511 0.81994 0.83361 1.90708 1.63831 1.55084 1.31523 1.46369 1.20741 1.28718 1.39882 1.19182 0.76405 0.94950 0.96423 1.21244 1.02256 1.12740 1.22023 0.91716 1.24958 0.96056 0.97692 0.95332 1.69980 1.09007 1.40510 1.32697 0.86334 0.78585 0.82034 0.79802 1.19607 1.20761 1.20756 1.22558 0.93096 1.00792 0.97729 0.92550 0.92580 0.92458 0.91310 0.91282 0.91183 0.90031 0.88574 0.88613 0.77430 0.95252 0.95248 0.92419 0.90796 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.14 37.16 0.34 -0.54 16 2 C -0.10 -0.68 3.46 -88.96 -0.31 -0.98 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.12 -0.87 6.37 -25.61 -0.16 -1.03 16 5 C -0.11 -1.04 6.38 -25.51 -0.16 -1.20 16 6 C -0.09 -0.87 3.37 -90.00 -0.30 -1.18 16 7 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 8 C 0.47 6.39 7.12 36.01 0.26 6.65 16 9 O -0.51 -7.84 15.46 -18.75 -0.29 -8.13 16 10 O -0.33 -5.24 9.76 -45.89 -0.45 -5.69 16 11 C 0.05 0.73 5.94 36.00 0.21 0.95 16 12 C 0.50 10.10 7.91 -10.99 -0.09 10.01 16 13 O -0.53 -13.12 16.50 -14.11 -0.23 -13.36 16 14 N -0.71 -14.71 5.55 -61.47 -0.34 -15.05 16 15 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 16 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 17 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.85 13.29 55.43 0.74 -25.11 16 20 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.10 -0.90 5.36 -24.74 -0.13 -1.04 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 1.31 8.13 -51.93 -0.42 0.88 16 33 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 34 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.84 7.37 -51.93 -0.38 0.45 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -32.86 331.48 -7.53 -40.39 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.14 Total: 1.37 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -0.79 Total: 4.91 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.40 Total: -40.16 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.97 Total: -27.17 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.86 -7.53 -40.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776427820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.813 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds