Wall clock time and date at job start Mon Mar 30 2020 01:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.53807 * 2 1 4 4 C 1.54265 * 110.48514 * 237.39010 * 2 1 3 5 5 C 1.53877 * 106.59605 * 217.71057 * 4 2 1 6 6 C 1.54463 * 106.68421 * 0.15594 * 5 4 2 7 7 H 1.09003 * 110.40626 * 264.75463 * 6 5 4 8 8 C 1.50709 * 110.65945 * 142.05352 * 6 5 4 9 9 O 1.20826 * 119.99986 * 245.23989 * 8 6 5 10 10 O 1.34225 * 119.99667 * 65.24146 * 8 6 5 11 11 C 1.45208 * 116.99716 * 180.02562 * 10 8 6 12 12 C 1.50696 * 109.46972 * 179.97438 * 11 10 8 13 13 O 1.21284 * 120.00488 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99844 * 179.97438 * 12 11 10 15 15 C 1.46495 * 119.99943 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47274 * 180.02562 * 15 14 12 17 17 H 1.07994 * 119.99754 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99998 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00573 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99778 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47081 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46899 * 120.00154 * 20 18 16 23 23 H 1.48500 * 109.47251 * 239.99868 * 20 18 16 24 24 C 1.54887 * 110.48663 * 122.60992 * 2 1 3 25 25 H 1.09003 * 109.46875 * 297.38667 * 1 2 3 26 26 H 1.09002 * 109.47508 * 57.38536 * 1 2 3 27 27 H 1.09000 * 109.47112 * 177.38719 * 1 2 3 28 28 H 1.08995 * 110.03137 * 336.98981 * 4 2 1 29 29 H 1.08993 * 110.03408 * 98.42715 * 4 2 1 30 30 H 1.08999 * 110.03493 * 119.28247 * 5 4 2 31 31 H 1.09003 * 110.03187 * 240.66884 * 5 4 2 32 32 H 1.09006 * 109.46799 * 299.99736 * 11 10 8 33 33 H 1.08993 * 109.46908 * 59.99479 * 11 10 8 34 34 H 0.97002 * 119.99806 * 0.02562 * 14 12 11 35 35 H 1.09006 * 109.47061 * 299.99674 * 15 14 12 36 36 H 1.09001 * 109.47840 * 59.99735 * 15 14 12 37 37 H 0.96995 * 120.00739 * 179.97438 * 19 18 16 38 38 H 1.09002 * 110.75856 * 274.93753 * 24 2 1 39 39 H 1.09006 * 110.75640 * 38.12739 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0699 -0.7788 -1.2173 5 6 3.3165 -1.5405 -0.7341 6 6 3.4905 -1.2020 0.7629 7 1 4.1917 -0.3767 0.8870 8 6 3.9568 -2.4119 1.5310 9 8 3.2417 -2.9079 2.3692 10 8 5.1664 -2.9385 1.2838 11 6 5.5493 -4.1038 2.0609 12 6 6.9277 -4.5520 1.6482 13 8 7.5284 -3.9485 0.7846 14 7 7.4933 -5.6229 2.2396 15 6 8.8334 -6.0582 1.8389 16 6 9.2309 -7.2677 2.6453 17 1 8.5531 -7.6714 3.3828 18 6 10.4597 -7.8588 2.4414 19 7 11.2848 -7.3675 1.5429 20 14 10.9525 -9.3576 3.4415 21 1 9.8553 -9.7106 4.3778 22 1 11.2095 -10.4997 2.5278 23 1 12.1844 -9.0544 4.2134 24 6 2.0721 -0.7819 1.2222 25 1 -0.3633 0.4727 0.9125 26 1 -0.3634 0.5539 -0.8656 27 1 -0.3633 -1.0266 -0.0468 28 1 1.3176 -1.4822 -1.5740 29 1 2.3411 -0.0857 -2.0136 30 1 3.1693 -2.6135 -0.8564 31 1 4.1927 -1.2176 -1.2965 32 1 5.5519 -3.8489 3.1207 33 1 4.8371 -4.9094 1.8826 34 1 7.0130 -6.1054 2.9306 35 1 8.8308 -6.3134 0.7791 36 1 9.5457 -5.2525 2.0167 37 1 12.1495 -7.7831 1.3997 38 1 2.1251 -0.1381 2.1002 39 1 1.4562 -1.6583 1.4243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776427820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:41 Heat of formation + Delta-G solvation = -170.794651 kcal Electronic energy + Delta-G solvation = -19979.412604 eV Core-core repulsion = 16692.158139 eV Total energy + Delta-G solvation = -3287.254465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.91293 -40.49990 -39.03200 -37.46852 -36.20073 -34.43333 -32.67849 -30.83292 -29.91639 -28.55448 -26.39301 -24.68709 -23.39594 -21.67377 -21.06962 -20.82341 -19.22495 -18.72185 -18.01685 -17.76581 -17.12179 -16.93742 -16.77984 -16.05837 -15.98824 -14.93571 -14.77669 -14.53507 -14.43002 -14.14741 -14.02647 -13.79135 -13.62609 -13.11445 -12.92378 -12.76555 -12.63078 -12.26727 -12.23559 -11.94098 -11.82405 -11.79039 -11.59296 -11.49183 -11.48010 -11.22569 -10.92724 -10.84321 -9.95203 -8.30845 -6.47459 1.04635 1.25897 1.44186 1.44324 1.52758 1.58202 2.32979 2.55597 3.04442 3.37701 3.50764 3.64287 3.75526 3.97615 4.02257 4.13754 4.28745 4.34849 4.43325 4.49698 4.66609 4.75088 4.87011 5.01013 5.04732 5.08646 5.14681 5.20168 5.24580 5.26135 5.33964 5.37002 5.40381 5.57595 5.61478 5.80734 6.55629 6.61867 6.76532 7.18857 7.33682 8.81520 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.058304 B = 0.002764 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.126443 B =10128.999833 C =10418.127002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.091 0.909 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.087 4.087 7 H 0.129 0.871 8 C 0.468 3.532 9 O -0.529 6.529 10 O -0.347 6.347 11 C 0.058 3.942 12 C 0.500 3.500 13 O -0.583 6.583 14 N -0.699 5.699 15 C 0.266 3.734 16 C -0.556 4.556 17 H 0.086 0.914 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.986 3.014 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.102 4.102 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.412 0.588 35 H -0.007 1.007 36 H -0.007 1.007 37 H 0.269 0.731 38 H 0.081 0.919 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.394 13.045 -0.763 25.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.109 0.891 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.106 4.106 7 H 0.147 0.853 8 C 0.312 3.688 9 O -0.418 6.418 10 O -0.263 6.263 11 C -0.019 4.019 12 C 0.285 3.715 13 O -0.463 6.463 14 N -0.350 5.350 15 C 0.144 3.856 16 C -0.594 4.594 17 H 0.104 0.896 18 C -0.196 4.196 19 N -0.568 5.568 20 Si 0.809 3.191 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.139 4.139 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.249 0.751 35 H 0.011 0.989 36 H 0.011 0.989 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.983 13.261 -1.201 24.851 hybrid contribution 0.707 -1.165 0.628 1.500 sum -20.276 12.096 -0.573 23.617 Atomic orbital electron populations 1.21789 0.93939 1.01917 1.02414 1.21984 0.96378 0.99582 0.93127 0.89059 1.22238 0.95860 0.99071 0.98221 1.22157 1.00372 1.00735 0.91935 1.22174 1.00060 0.92478 0.95912 0.85279 1.24428 0.78032 0.85222 0.81102 1.90637 1.55484 1.61906 1.33745 1.86594 1.35838 1.43135 1.60713 1.22732 0.93332 0.88413 0.97392 1.20683 0.87977 0.80790 0.82007 1.90683 1.65568 1.56442 1.33637 1.46052 1.19150 1.29338 1.40494 1.18643 0.78401 0.94045 0.94559 1.21632 1.02853 1.12645 1.22238 0.89618 1.26059 0.96013 1.01147 0.96380 1.70133 1.09643 1.42445 1.34623 0.85095 0.78514 0.77376 0.78133 1.17664 1.20483 1.20467 1.22568 0.91873 1.00555 0.98932 0.92160 0.91534 0.93042 0.91172 0.89915 0.92623 0.90000 0.85945 0.86098 0.75135 0.98947 0.98927 0.92178 0.90070 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.14 71.98 0.66 -0.80 16 2 C -0.09 -1.07 3.46 -9.72 -0.03 -1.10 16 3 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 4 C -0.12 -1.47 6.37 31.32 0.20 -1.27 16 5 C -0.11 -1.99 6.38 31.39 0.20 -1.79 16 6 C -0.09 -1.65 3.37 -10.39 -0.04 -1.68 16 7 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 8 C 0.47 12.33 7.12 71.24 0.51 12.84 16 9 O -0.53 -15.53 15.46 21.96 0.34 -15.19 16 10 O -0.35 -10.88 9.76 -45.02 -0.44 -11.32 16 11 C 0.06 1.73 5.94 71.23 0.42 2.15 16 12 C 0.50 20.32 7.91 87.66 0.69 21.02 16 13 O -0.58 -29.59 16.50 15.75 0.26 -29.33 16 14 N -0.70 -29.15 5.55 -466.78 -2.59 -31.74 16 15 C 0.27 14.42 5.43 85.64 0.46 14.89 16 16 C -0.56 -29.82 9.28 25.60 0.24 -29.58 16 17 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 18 C 0.00 0.21 5.46 84.65 0.46 0.67 16 19 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 20 Si 0.99 41.94 29.54 68.60 2.03 43.97 16 21 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 22 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 24 C -0.10 -1.60 5.36 31.88 0.17 -1.43 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.58 8.08 -2.39 -0.02 0.56 16 28 H 0.07 0.87 7.79 -2.39 -0.02 0.86 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 1.12 7.83 -2.39 -0.02 1.10 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.12 3.04 8.13 -2.38 -0.02 3.02 16 33 H 0.12 3.02 8.13 -2.39 -0.02 3.00 16 34 H 0.41 13.87 8.32 -92.71 -0.77 13.10 16 35 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.31 7.37 -2.38 -0.02 1.29 16 Total: -1.00 -72.73 331.48 4.10 -68.63 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.27 Total: 16.39 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 3.95 Total: 13.91 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -2.30 Total: -87.05 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: 0.16 Total: -55.85 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -72.73 4.10 -68.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776427820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.165 kcal (2) G-P(sol) polarization free energy of solvation -72.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds