Wall clock time and date at job start Mon Mar 30 2020 01:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47101 * 2 1 4 4 C 1.50697 * 109.47069 * 239.99496 * 2 1 3 5 5 H 1.07998 * 119.99916 * 245.63594 * 4 2 1 6 6 C 1.37872 * 120.00038 * 65.63648 * 4 2 1 7 7 N 1.31520 * 120.00019 * 197.76370 * 6 4 2 8 8 Si 1.86802 * 120.00157 * 17.48300 * 6 4 2 9 9 H 1.48499 * 109.47522 * 180.27850 * 8 6 4 10 10 H 1.48500 * 109.47106 * 300.28123 * 8 6 4 11 11 H 1.48503 * 109.46906 * 60.27708 * 8 6 4 12 12 O 1.45203 * 109.47064 * 119.99760 * 2 1 3 13 13 C 1.34229 * 116.99844 * 270.00192 * 12 2 1 14 14 O 1.20830 * 120.00266 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99931 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.47237 * 59.99631 * 15 13 12 17 17 C 1.52999 * 109.47349 * 299.99988 * 15 13 12 18 18 C 1.53000 * 109.47378 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.47214 * 59.99423 * 18 17 15 20 20 C 1.52995 * 109.47320 * 300.00199 * 19 18 17 21 21 H 1.09000 * 109.46978 * 179.97438 * 20 19 18 22 22 C 1.50697 * 109.47517 * 300.00272 * 20 19 18 23 23 N 1.34784 * 119.99331 * 299.99790 * 22 20 19 24 24 O 1.21277 * 120.00879 * 119.99707 * 22 20 19 25 25 C 1.53006 * 109.47184 * 179.97438 * 15 13 12 26 26 H 1.09008 * 109.47276 * 306.35898 * 1 2 3 27 27 H 1.09004 * 109.47134 * 66.35368 * 1 2 3 28 28 H 1.08997 * 109.47604 * 186.36050 * 1 2 3 29 29 H 0.96996 * 119.99666 * 354.59314 * 7 6 4 30 30 H 1.09004 * 109.46660 * 299.99997 * 17 15 13 31 31 H 1.08996 * 109.46938 * 59.99560 * 17 15 13 32 32 H 1.08998 * 109.47246 * 179.97438 * 18 17 15 33 33 H 1.08997 * 109.46908 * 299.99881 * 18 17 15 34 34 H 1.08997 * 109.46809 * 60.00397 * 19 18 17 35 35 H 1.09002 * 109.47065 * 180.02562 * 19 18 17 36 36 H 0.96995 * 120.00472 * 0.02562 * 23 22 20 37 37 H 0.96996 * 119.99714 * 179.97438 * 23 22 20 38 38 H 1.08998 * 109.47333 * 300.00283 * 25 15 13 39 39 H 1.08997 * 109.46809 * 60.00343 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5760 -1.6386 -1.1338 6 6 1.7977 -0.1757 -2.4793 7 7 1.9114 -0.9310 -3.5500 8 14 1.3107 1.6196 -2.6502 9 1 1.1107 1.9438 -4.0855 10 1 0.0481 1.8629 -1.9072 11 1 2.3861 2.4793 -2.0937 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0641 2.2811 14 8 1.9981 1.2520 2.2503 15 6 2.7181 -0.5770 3.5495 16 1 3.6870 -1.0408 3.3641 17 6 1.7222 -1.6434 4.0099 18 6 2.2306 -2.2939 5.2981 19 6 2.3750 -1.2273 6.3856 20 6 3.3709 -0.1610 5.9252 21 1 3.4733 0.5990 6.6997 22 6 4.7106 -0.8019 5.6692 23 7 5.3542 -1.4394 6.6673 24 8 5.2096 -0.7442 4.5654 25 6 2.8634 0.4893 4.6371 26 1 -0.3634 0.6093 0.8277 27 1 -0.3633 0.4122 -0.9414 28 1 -0.3634 -1.0213 0.1138 29 1 2.2358 -1.8415 -3.4690 30 1 0.7533 -1.1797 4.1954 31 1 1.6191 -2.4029 3.2350 32 1 1.5209 -3.0533 5.6263 33 1 3.1996 -2.7575 5.1130 34 1 1.4060 -0.7637 6.5706 35 1 2.7376 -1.6907 7.3031 36 1 4.9550 -1.4860 7.5500 37 1 6.2163 -1.8523 6.5025 38 1 3.5731 1.2487 4.3090 39 1 1.8947 0.9533 4.8227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786946569.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:04 Heat of formation + Delta-G solvation = -153.101897 kcal Electronic energy + Delta-G solvation = -21513.835477 eV Core-core repulsion = 18227.348228 eV Total energy + Delta-G solvation = -3286.487249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80908 -39.40136 -37.10134 -35.68292 -34.03270 -33.16023 -31.34617 -30.94895 -30.10938 -24.92707 -24.25314 -23.84385 -21.76679 -21.04036 -19.61069 -19.33178 -17.71590 -17.41203 -16.73122 -16.55415 -16.10390 -15.25411 -14.86836 -14.76815 -14.17175 -13.91326 -13.66706 -13.28472 -12.87284 -12.65859 -12.40182 -12.27770 -12.24797 -12.00101 -11.56609 -11.49028 -11.22831 -10.97836 -10.65460 -10.49934 -10.25878 -10.00795 -9.91397 -9.87503 -9.71918 -9.61861 -9.39892 -8.87901 -8.27533 -6.57763 -4.16786 2.48051 3.01845 3.31880 3.37019 3.44950 3.57505 3.66423 4.42413 4.49631 4.52599 4.54051 4.85783 5.07643 5.11438 5.17993 5.22739 5.31645 5.41212 5.47712 5.70218 5.79963 5.89415 5.93558 6.04354 6.13656 6.29613 6.33827 6.39336 6.52668 6.57540 6.60200 6.80572 7.10146 7.23421 7.50630 7.92450 8.10578 8.32216 8.62899 8.94045 9.50725 10.85215 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.004619 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.107779 B = 6061.008821 C = 6132.746963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.193 3.807 3 H 0.036 0.964 4 C -0.605 4.605 5 H 0.068 0.932 6 C 0.038 3.962 7 N -0.896 5.896 8 Si 1.039 2.961 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.279 1.279 12 O -0.344 6.344 13 C 0.458 3.542 14 O -0.529 6.529 15 C -0.093 4.093 16 H 0.128 0.872 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.111 4.111 20 C -0.109 4.109 21 H 0.102 0.898 22 C 0.520 3.480 23 N -0.859 5.859 24 O -0.529 6.529 25 C -0.083 4.083 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.271 0.729 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.399 0.601 37 H 0.400 0.600 38 H 0.078 0.922 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.537 -1.530 24.657 24.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.139 3.861 3 H 0.054 0.946 4 C -0.643 4.643 5 H 0.086 0.914 6 C -0.167 4.167 7 N -0.529 5.529 8 Si 0.866 3.134 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.205 1.205 12 O -0.259 6.259 13 C 0.302 3.698 14 O -0.419 6.419 15 C -0.112 4.112 16 H 0.146 0.854 17 C -0.149 4.149 18 C -0.158 4.158 19 C -0.149 4.149 20 C -0.130 4.130 21 H 0.120 0.880 22 C 0.305 3.695 23 N -0.423 5.423 24 O -0.405 6.405 25 C -0.121 4.121 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.227 0.773 37 H 0.230 0.770 38 H 0.097 0.903 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.159 0.090 22.675 22.705 hybrid contribution 0.695 -1.299 1.482 2.090 sum 1.853 -1.210 24.157 24.258 Atomic orbital electron populations 1.22551 0.98133 1.00910 1.00855 1.20839 0.90869 0.94013 0.80348 0.94601 1.21931 1.41702 1.10879 0.89754 0.91400 1.25664 0.94540 1.05163 0.91378 1.70868 1.40978 1.09992 1.31054 0.84139 0.77614 0.75152 0.76500 1.20478 1.19787 1.20470 1.86546 1.75610 1.42971 1.20773 1.23496 0.74202 0.85911 0.86202 1.90554 1.49275 1.17096 1.85012 1.21275 1.02627 0.97178 0.90141 0.85416 1.21510 0.97912 0.97838 0.97640 1.21579 1.01832 0.97583 0.94796 1.21589 0.99313 0.95850 0.98167 1.21412 0.92349 0.98833 1.00423 0.88017 1.20714 0.86877 0.77653 0.84288 1.43920 1.24939 1.59596 1.13800 1.90743 1.67717 1.58912 1.23110 1.21188 1.02402 0.97015 0.91470 0.95159 0.91071 0.92764 0.91906 0.91518 0.90170 0.91065 0.91802 0.90295 0.91493 0.77280 0.76973 0.90329 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 9.22 37.16 0.34 -3.68 16 2 C 0.19 5.20 2.14 -27.89 -0.06 5.14 16 3 H 0.04 1.01 5.81 -51.93 -0.30 0.71 16 4 C -0.61 -18.16 9.16 -34.44 -0.32 -18.47 16 5 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 6 C 0.04 1.14 5.29 -17.82 -0.09 1.05 16 7 N -0.90 -27.82 13.70 55.43 0.76 -27.06 16 8 Si 1.04 26.03 26.29 -169.99 -4.47 21.57 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.27 -6.30 5.75 56.52 0.33 -5.98 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 O -0.34 -8.57 9.77 -39.25 -0.38 -8.95 16 13 C 0.46 10.01 7.23 36.01 0.26 10.27 16 14 O -0.53 -12.55 15.20 -18.75 -0.29 -12.83 16 15 C -0.09 -1.54 2.33 -91.77 -0.21 -1.75 16 16 H 0.13 2.30 5.51 -51.93 -0.29 2.02 16 17 C -0.11 -1.49 5.14 -26.73 -0.14 -1.62 16 18 C -0.12 -1.15 5.70 -26.73 -0.15 -1.31 16 19 C -0.11 -0.81 5.36 -26.73 -0.14 -0.95 16 20 C -0.11 -1.00 3.01 -91.80 -0.28 -1.28 16 21 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 22 C 0.52 5.62 5.91 -10.98 -0.06 5.56 16 23 N -0.86 -5.45 8.77 31.22 0.27 -5.18 16 24 O -0.53 -8.47 14.49 5.56 0.08 -8.39 16 25 C -0.08 -1.12 3.66 -26.75 -0.10 -1.22 16 26 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.07 1.72 4.88 -51.93 -0.25 1.46 16 28 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.27 8.35 8.73 -40.82 -0.36 8.00 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.66 7.22 -51.93 -0.37 0.29 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.31 7.56 -51.93 -0.39 -0.09 16 36 H 0.40 1.22 8.25 -40.82 -0.34 0.88 16 37 H 0.40 2.33 8.93 -40.82 -0.36 1.96 16 38 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 39 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 310.40 15.07 4.68 4.68 Total: -1.00 -36.12 310.40 -6.06 -42.18 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.76 Total: 2.27 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.95 Total: -8.27 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 1.03 Total: -32.25 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.59 Total: -30.17 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -4.47 Total: 21.57 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.12 -6.06 -42.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786946569.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.925 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds