Wall clock time and date at job start Mon Mar 30 2020 01:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47101 * 2 1 4 4 C 1.50697 * 109.47069 * 239.99496 * 2 1 3 5 5 H 1.07998 * 119.99916 * 245.63594 * 4 2 1 6 6 C 1.37872 * 120.00038 * 65.63648 * 4 2 1 7 7 N 1.31520 * 120.00019 * 197.76370 * 6 4 2 8 8 Si 1.86802 * 120.00157 * 17.48300 * 6 4 2 9 9 H 1.48499 * 109.47522 * 180.27850 * 8 6 4 10 10 H 1.48500 * 109.47106 * 300.28123 * 8 6 4 11 11 H 1.48503 * 109.46906 * 60.27708 * 8 6 4 12 12 O 1.45203 * 109.47064 * 119.99760 * 2 1 3 13 13 C 1.34229 * 116.99844 * 270.00192 * 12 2 1 14 14 O 1.20830 * 120.00266 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99931 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.47237 * 59.99631 * 15 13 12 17 17 C 1.52999 * 109.47349 * 299.99988 * 15 13 12 18 18 C 1.53000 * 109.47378 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.47214 * 59.99423 * 18 17 15 20 20 C 1.52995 * 109.47320 * 300.00199 * 19 18 17 21 21 H 1.09000 * 109.46978 * 179.97438 * 20 19 18 22 22 C 1.50697 * 109.47517 * 300.00272 * 20 19 18 23 23 N 1.34784 * 119.99331 * 299.99790 * 22 20 19 24 24 O 1.21277 * 120.00879 * 119.99707 * 22 20 19 25 25 C 1.53006 * 109.47184 * 179.97438 * 15 13 12 26 26 H 1.09008 * 109.47276 * 306.35898 * 1 2 3 27 27 H 1.09004 * 109.47134 * 66.35368 * 1 2 3 28 28 H 1.08997 * 109.47604 * 186.36050 * 1 2 3 29 29 H 0.96996 * 119.99666 * 354.59314 * 7 6 4 30 30 H 1.09004 * 109.46660 * 299.99997 * 17 15 13 31 31 H 1.08996 * 109.46938 * 59.99560 * 17 15 13 32 32 H 1.08998 * 109.47246 * 179.97438 * 18 17 15 33 33 H 1.08997 * 109.46908 * 299.99881 * 18 17 15 34 34 H 1.08997 * 109.46809 * 60.00397 * 19 18 17 35 35 H 1.09002 * 109.47065 * 180.02562 * 19 18 17 36 36 H 0.96995 * 120.00472 * 0.02562 * 23 22 20 37 37 H 0.96996 * 119.99714 * 179.97438 * 23 22 20 38 38 H 1.08998 * 109.47333 * 300.00283 * 25 15 13 39 39 H 1.08997 * 109.46809 * 60.00343 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5760 -1.6386 -1.1338 6 6 1.7977 -0.1757 -2.4793 7 7 1.9114 -0.9310 -3.5500 8 14 1.3107 1.6196 -2.6502 9 1 1.1107 1.9438 -4.0855 10 1 0.0481 1.8629 -1.9072 11 1 2.3861 2.4793 -2.0937 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0641 2.2811 14 8 1.9981 1.2520 2.2503 15 6 2.7181 -0.5770 3.5495 16 1 3.6870 -1.0408 3.3641 17 6 1.7222 -1.6434 4.0099 18 6 2.2306 -2.2939 5.2981 19 6 2.3750 -1.2273 6.3856 20 6 3.3709 -0.1610 5.9252 21 1 3.4733 0.5990 6.6997 22 6 4.7106 -0.8019 5.6692 23 7 5.3542 -1.4394 6.6673 24 8 5.2096 -0.7442 4.5654 25 6 2.8634 0.4893 4.6371 26 1 -0.3634 0.6093 0.8277 27 1 -0.3633 0.4122 -0.9414 28 1 -0.3634 -1.0213 0.1138 29 1 2.2358 -1.8415 -3.4690 30 1 0.7533 -1.1797 4.1954 31 1 1.6191 -2.4029 3.2350 32 1 1.5209 -3.0533 5.6263 33 1 3.1996 -2.7575 5.1130 34 1 1.4060 -0.7637 6.5706 35 1 2.7376 -1.6907 7.3031 36 1 4.9550 -1.4860 7.5500 37 1 6.2163 -1.8523 6.5025 38 1 3.5731 1.2487 4.3090 39 1 1.8947 0.9533 4.8227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786946569.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:03 Heat of formation + Delta-G solvation = -180.612310 kcal Electronic energy + Delta-G solvation = -21515.028418 eV Core-core repulsion = 18227.348228 eV Total energy + Delta-G solvation = -3287.680190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.97612 -40.90609 -38.26583 -37.44114 -35.40133 -34.82188 -32.74681 -31.93212 -31.76064 -27.07550 -25.51262 -24.85331 -22.94963 -22.51381 -21.20196 -20.36187 -19.89858 -18.69663 -17.90892 -17.67066 -17.26393 -16.97317 -16.25567 -15.76516 -15.57478 -15.13446 -15.03391 -14.85899 -14.69214 -14.13603 -13.97975 -13.66845 -13.39468 -13.30241 -13.13743 -13.03387 -12.54430 -12.23058 -12.09659 -11.90743 -11.81144 -11.70033 -11.60887 -11.19823 -11.10981 -11.03989 -10.69958 -10.59019 -10.50397 -8.98783 -6.59864 1.25562 1.36104 1.44012 1.63977 1.69494 1.97789 2.31907 2.65180 2.86467 3.53024 3.66194 3.76365 3.94567 4.09023 4.15146 4.23473 4.26642 4.38478 4.44332 4.49956 4.58186 4.61695 4.72073 4.84263 4.98694 4.99783 5.11275 5.16359 5.20570 5.26629 5.28996 5.42134 5.43752 5.79431 5.91074 5.97437 6.34533 6.54088 6.88113 7.18173 7.43985 8.43379 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.004619 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.107779 B = 6061.008821 C = 6132.746963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.191 3.809 3 H 0.025 0.975 4 C -0.621 4.621 5 H 0.027 0.973 6 C -0.002 4.002 7 N -0.915 5.915 8 Si 1.074 2.926 9 H -0.268 1.268 10 H -0.238 1.238 11 H -0.273 1.273 12 O -0.361 6.361 13 C 0.450 3.550 14 O -0.549 6.549 15 C -0.087 4.087 16 H 0.110 0.890 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.105 4.105 20 C -0.101 4.101 21 H 0.140 0.860 22 C 0.514 3.486 23 N -0.834 5.834 24 O -0.593 6.593 25 C -0.081 4.081 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.258 0.742 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.419 0.581 37 H 0.404 0.596 38 H 0.050 0.950 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 -0.784 28.220 28.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.137 3.863 3 H 0.043 0.957 4 C -0.658 4.658 5 H 0.045 0.955 6 C -0.203 4.203 7 N -0.549 5.549 8 Si 0.894 3.106 9 H -0.193 1.193 10 H -0.162 1.162 11 H -0.199 1.199 12 O -0.278 6.278 13 C 0.295 3.705 14 O -0.440 6.440 15 C -0.106 4.106 16 H 0.128 0.872 17 C -0.148 4.148 18 C -0.154 4.154 19 C -0.143 4.143 20 C -0.122 4.122 21 H 0.158 0.842 22 C 0.300 3.700 23 N -0.398 5.398 24 O -0.474 6.474 25 C -0.119 4.119 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.251 0.749 37 H 0.235 0.765 38 H 0.069 0.931 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.123 0.790 26.327 26.339 hybrid contribution 1.205 -1.618 0.426 2.062 sum 1.082 -0.828 26.753 26.787 Atomic orbital electron populations 1.22406 0.95578 1.01739 1.01798 1.20658 0.92699 0.92797 0.80196 0.95681 1.22054 1.41887 1.09787 0.92091 0.95473 1.27087 0.93760 1.08616 0.90794 1.70978 1.42410 1.09663 1.31868 0.83718 0.79095 0.70122 0.77679 1.19272 1.16198 1.19902 1.86546 1.76211 1.43689 1.21309 1.24694 0.73305 0.85870 0.86637 1.90518 1.50258 1.17965 1.85287 1.21450 1.02148 0.98756 0.88260 0.87204 1.21554 0.97616 0.96397 0.99194 1.21593 1.01649 0.98689 0.93446 1.21661 0.99681 0.94433 0.98490 1.21445 0.91746 1.00222 0.98762 0.84234 1.21076 0.87459 0.77505 0.83950 1.43713 1.24668 1.57570 1.13859 1.90732 1.69319 1.61539 1.25821 1.21194 1.02341 0.95774 0.92610 0.92944 0.90925 0.92362 0.93280 0.90515 0.92480 0.88626 0.92933 0.88575 0.87392 0.74852 0.76464 0.93131 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.46 9.22 71.98 0.66 -6.79 16 2 C 0.19 10.46 2.14 29.85 0.06 10.52 16 3 H 0.03 1.43 5.81 -2.39 -0.01 1.42 16 4 C -0.62 -38.70 9.16 25.60 0.23 -38.47 16 5 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 6 C 0.00 -0.13 5.29 84.65 0.45 0.32 16 7 N -0.92 -58.30 13.70 21.45 0.29 -58.01 16 8 Si 1.07 51.97 26.29 68.60 1.80 53.77 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.24 -10.20 5.75 99.48 0.57 -9.63 16 11 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 12 O -0.36 -18.69 9.77 -51.40 -0.50 -19.19 16 13 C 0.45 20.14 7.23 71.24 0.51 20.65 16 14 O -0.55 -26.37 15.20 21.95 0.33 -26.03 16 15 C -0.09 -2.92 2.33 -11.54 -0.03 -2.94 16 16 H 0.11 4.18 5.51 -2.38 -0.01 4.17 16 17 C -0.11 -2.84 5.14 30.59 0.16 -2.68 16 18 C -0.12 -1.89 5.70 30.60 0.17 -1.72 16 19 C -0.11 -1.02 5.36 30.59 0.16 -0.85 16 20 C -0.10 -1.54 3.01 -11.56 -0.03 -1.57 16 21 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 22 C 0.51 10.22 5.91 87.65 0.52 10.74 16 23 N -0.83 -8.10 8.77 -173.53 -1.52 -9.62 16 24 O -0.59 -19.39 14.49 -3.02 -0.04 -19.43 16 25 C -0.08 -2.13 3.66 30.58 0.11 -2.01 16 26 H 0.05 2.21 8.14 -2.38 -0.02 2.20 16 27 H 0.07 3.38 4.88 -2.38 -0.01 3.37 16 28 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.26 16.63 8.73 -92.71 -0.81 15.83 16 30 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.06 1.71 8.11 -2.39 -0.02 1.69 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 0.99 7.22 -2.39 -0.02 0.97 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.11 0.27 7.56 -2.39 -0.02 0.25 16 36 H 0.42 0.62 8.25 -92.71 -0.76 -0.14 16 37 H 0.40 3.80 8.93 -92.71 -0.83 2.98 16 38 H 0.05 1.58 8.06 -2.39 -0.02 1.57 16 39 H 0.09 2.09 8.10 -2.39 -0.02 2.08 16 Total: -1.00 -83.99 310.40 2.67 -81.33 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -0.69 Total: 12.00 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 2.99 Total: -14.82 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -1.23 Total: -67.62 kcal Atomic # 8 Polarization: -64.44 SS G_CDS: -0.21 Total: -64.66 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 1.80 Total: 53.77 kcal Total: -83.99 2.67 -81.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786946569.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.285 kcal (2) G-P(sol) polarization free energy of solvation -83.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds