Wall clock time and date at job start Mon Mar 30 2020 01:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46898 * 2 1 4 4 C 1.53000 * 109.46997 * 120.00436 * 2 1 3 5 5 C 1.52998 * 109.47098 * 60.00236 * 4 2 1 6 6 C 1.52998 * 109.47503 * 59.99959 * 5 4 2 7 7 C 1.53000 * 109.46977 * 300.00115 * 6 5 4 8 8 C 1.52998 * 109.47413 * 59.99851 * 7 6 5 9 9 H 1.08998 * 109.47345 * 59.99969 * 8 7 6 10 10 C 1.50700 * 109.47533 * 180.02562 * 8 7 6 11 11 O 1.20829 * 120.00495 * 119.99684 * 10 8 7 12 12 O 1.34227 * 119.99875 * 299.99904 * 10 8 7 13 13 C 1.45195 * 117.00234 * 179.97438 * 12 10 8 14 14 C 1.50702 * 109.47182 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99928 * 179.72352 * 14 13 12 17 17 C 1.37101 * 120.00327 * 180.27606 * 16 14 13 18 18 H 1.08001 * 119.99426 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00412 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00005 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00057 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46867 * 90.00263 * 21 19 17 23 23 H 1.48501 * 109.47216 * 210.00120 * 21 19 17 24 24 H 1.48499 * 109.47135 * 330.00462 * 21 19 17 25 25 H 1.08999 * 109.46874 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47385 * 299.99648 * 1 2 3 27 27 H 1.09008 * 109.47168 * 59.99738 * 1 2 3 28 28 H 1.08998 * 109.46890 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.46984 * 299.99604 * 4 2 1 30 30 H 1.09000 * 109.47032 * 179.97438 * 5 4 2 31 31 H 1.09004 * 109.46901 * 299.99857 * 5 4 2 32 32 H 1.08998 * 109.46936 * 59.99628 * 6 5 4 33 33 H 1.08993 * 109.47330 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.47127 * 299.99919 * 7 6 5 35 35 H 1.08996 * 109.47429 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.47055 * 60.00127 * 13 12 10 37 37 H 1.09000 * 109.47653 * 300.00333 * 13 12 10 38 38 H 0.97000 * 120.00317 * 0.28382 * 16 14 13 39 39 H 0.96996 * 120.00330 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5300 -2.1638 1.2490 6 6 2.0400 -2.8850 -0.0002 7 6 1.5301 -2.1637 -1.2494 8 6 2.0400 -0.7212 -1.2494 9 1 3.1300 -0.7211 -1.2493 10 6 1.5372 -0.0105 -2.4794 11 8 0.8426 0.9719 -2.3682 12 8 1.8610 -0.4688 -3.6988 13 6 1.3410 0.2653 -4.8385 14 6 1.8056 -0.3909 -6.1131 15 8 2.5057 -1.3802 -6.0657 16 7 1.4382 0.1180 -7.3058 17 6 1.8561 -0.4822 -8.4654 18 1 2.4795 -1.3631 -8.4231 19 6 1.4778 0.0428 -9.6949 20 7 0.7196 1.1149 -9.7464 21 14 2.0479 -0.7747 -11.2749 22 1 1.0562 -1.8002 -11.6873 23 1 2.1754 0.2485 -12.3435 24 1 3.3652 -1.4222 -11.0497 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.1300 -0.7209 1.2494 29 1 1.6767 -0.2075 2.1392 30 1 1.8937 -2.6779 2.1388 31 1 0.4400 -2.1638 1.2490 32 1 3.1300 -2.8850 -0.0002 33 1 1.6763 -3.9125 -0.0005 34 1 0.4400 -2.1637 -1.2494 35 1 1.8937 -2.6771 -2.1394 36 1 1.7045 1.2924 -4.8056 37 1 0.2515 0.2642 -4.8050 38 1 0.8781 0.9091 -7.3438 39 1 0.4558 1.4817 -10.6047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820939516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:12 Heat of formation + Delta-G solvation = -147.583867 kcal Electronic energy + Delta-G solvation = -20776.101297 eV Core-core repulsion = 17489.853328 eV Total energy + Delta-G solvation = -3286.247969 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81616 -38.82720 -37.90994 -36.03390 -33.99066 -32.01481 -31.56762 -31.32452 -28.42292 -27.06853 -24.72375 -23.62154 -22.41846 -20.79307 -19.56511 -18.69643 -18.04813 -17.46353 -16.52408 -16.33495 -15.73403 -15.23256 -14.78387 -14.54132 -14.22673 -14.02729 -13.78633 -13.43271 -13.05159 -12.99070 -12.59565 -12.31738 -11.98958 -11.82313 -11.61527 -11.56275 -11.31880 -11.14852 -11.06971 -10.85466 -10.43816 -10.40290 -10.31709 -10.28999 -10.18846 -9.85396 -9.59725 -8.50442 -8.07429 -6.49282 -3.91338 2.36496 2.78377 3.13732 3.23755 3.30112 3.75126 4.11786 4.38725 4.49520 4.54560 4.85590 4.94984 5.00950 5.12884 5.15912 5.16101 5.20787 5.25627 5.45154 5.51558 5.59069 5.64759 5.71832 5.79946 5.83608 5.88239 5.90960 5.94401 6.06727 6.13739 6.15701 6.24192 6.39736 6.77556 7.48387 7.89752 8.00558 8.49685 9.07922 9.40428 9.90522 10.68028 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045074 B = 0.003448 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.045120 B = 8119.270869 C = 8541.558167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.074 4.074 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.073 4.073 9 H 0.107 0.893 10 C 0.461 3.539 11 O -0.511 6.511 12 O -0.325 6.325 13 C 0.060 3.940 14 C 0.439 3.561 15 O -0.576 6.576 16 N -0.553 5.553 17 C -0.302 4.302 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.898 5.898 21 Si 0.934 3.066 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.268 1.268 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.395 0.605 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.032 -2.499 19.460 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.093 4.093 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.162 4.162 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.092 4.092 9 H 0.125 0.875 10 C 0.304 3.696 11 O -0.400 6.400 12 O -0.239 6.239 13 C -0.018 4.018 14 C 0.223 3.777 15 O -0.460 6.460 16 N -0.191 5.191 17 C -0.432 4.432 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.538 5.538 21 Si 0.760 3.240 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.228 0.772 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.161 -2.767 19.308 19.506 hybrid contribution -0.216 0.420 -0.958 1.068 sum -0.056 -2.347 18.350 18.500 Atomic orbital electron populations 1.22186 0.94600 1.02009 1.03299 1.20955 0.97022 0.99085 0.92215 0.90471 1.21572 1.00624 0.95701 0.97146 1.21621 1.01267 0.95515 0.97774 1.21520 1.01041 0.98967 0.93858 1.21588 1.01547 0.92648 0.99559 1.21094 1.02509 0.96247 0.89340 0.87479 1.23809 0.77639 0.82852 0.85311 1.90579 1.35841 1.26281 1.87271 1.86559 1.68647 1.54618 1.14070 1.22726 0.99466 0.95631 0.83968 1.19345 0.86727 0.87639 0.83942 1.90558 1.41340 1.27451 1.86639 1.41711 1.45723 1.27700 1.03948 1.19728 1.29839 1.11408 0.82178 0.87628 1.25309 0.96577 0.96225 0.99653 1.69614 1.35561 1.21483 1.27172 0.85800 0.79329 0.78553 0.80282 1.20262 1.20818 1.19270 0.92533 0.92955 0.90172 0.91801 0.91572 0.92049 0.91505 0.91606 0.91475 0.91086 0.89948 0.89676 0.89667 0.77178 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.18 37.16 0.30 -1.48 16 2 C -0.07 -0.77 2.36 -90.61 -0.21 -0.98 16 3 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 4 C -0.11 -0.91 5.45 -26.73 -0.15 -1.06 16 5 C -0.12 -0.96 5.65 -26.73 -0.15 -1.11 16 6 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 7 C -0.12 -1.27 4.86 -26.73 -0.13 -1.40 16 8 C -0.07 -0.87 2.41 -91.77 -0.22 -1.09 16 9 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 10 C 0.46 7.30 6.96 36.01 0.25 7.55 16 11 O -0.51 -8.76 13.41 -18.75 -0.25 -9.01 16 12 O -0.32 -6.12 9.66 -45.90 -0.44 -6.56 16 13 C 0.06 1.16 5.94 36.01 0.21 1.37 16 14 C 0.44 10.70 7.86 -10.98 -0.09 10.61 16 15 O -0.58 -16.12 16.08 -14.11 -0.23 -16.35 16 16 N -0.55 -14.12 5.29 -10.96 -0.06 -14.18 16 17 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 18 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 19 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 21 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.08 5.52 -51.92 -0.29 0.79 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 35 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 37 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 38 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -31.36 315.16 -6.79 -38.15 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.68 Total: 7.65 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.58 Total: 3.29 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.67 Total: -37.66 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.92 Total: -31.92 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.36 -6.79 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820939516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.433 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds