Wall clock time and date at job start Mon Mar 30 2020 01:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46898 * 2 1 4 4 C 1.53000 * 109.46997 * 120.00436 * 2 1 3 5 5 C 1.52998 * 109.47098 * 60.00236 * 4 2 1 6 6 C 1.52998 * 109.47503 * 59.99959 * 5 4 2 7 7 C 1.53000 * 109.46977 * 300.00115 * 6 5 4 8 8 C 1.52998 * 109.47413 * 59.99851 * 7 6 5 9 9 H 1.08998 * 109.47345 * 59.99969 * 8 7 6 10 10 C 1.50700 * 109.47533 * 180.02562 * 8 7 6 11 11 O 1.20829 * 120.00495 * 119.99684 * 10 8 7 12 12 O 1.34227 * 119.99875 * 299.99904 * 10 8 7 13 13 C 1.45195 * 117.00234 * 179.97438 * 12 10 8 14 14 C 1.50702 * 109.47182 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99928 * 179.72352 * 14 13 12 17 17 C 1.37101 * 120.00327 * 180.27606 * 16 14 13 18 18 H 1.08001 * 119.99426 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00412 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00005 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00057 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46867 * 90.00263 * 21 19 17 23 23 H 1.48501 * 109.47216 * 210.00120 * 21 19 17 24 24 H 1.48499 * 109.47135 * 330.00462 * 21 19 17 25 25 H 1.08999 * 109.46874 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47385 * 299.99648 * 1 2 3 27 27 H 1.09008 * 109.47168 * 59.99738 * 1 2 3 28 28 H 1.08998 * 109.46890 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.46984 * 299.99604 * 4 2 1 30 30 H 1.09000 * 109.47032 * 179.97438 * 5 4 2 31 31 H 1.09004 * 109.46901 * 299.99857 * 5 4 2 32 32 H 1.08998 * 109.46936 * 59.99628 * 6 5 4 33 33 H 1.08993 * 109.47330 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.47127 * 299.99919 * 7 6 5 35 35 H 1.08996 * 109.47429 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.47055 * 60.00127 * 13 12 10 37 37 H 1.09000 * 109.47653 * 300.00333 * 13 12 10 38 38 H 0.97000 * 120.00317 * 0.28382 * 16 14 13 39 39 H 0.96996 * 120.00330 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5300 -2.1638 1.2490 6 6 2.0400 -2.8850 -0.0002 7 6 1.5301 -2.1637 -1.2494 8 6 2.0400 -0.7212 -1.2494 9 1 3.1300 -0.7211 -1.2493 10 6 1.5372 -0.0105 -2.4794 11 8 0.8426 0.9719 -2.3682 12 8 1.8610 -0.4688 -3.6988 13 6 1.3410 0.2653 -4.8385 14 6 1.8056 -0.3909 -6.1131 15 8 2.5057 -1.3802 -6.0657 16 7 1.4382 0.1180 -7.3058 17 6 1.8561 -0.4822 -8.4654 18 1 2.4795 -1.3631 -8.4231 19 6 1.4778 0.0428 -9.6949 20 7 0.7196 1.1149 -9.7464 21 14 2.0479 -0.7747 -11.2749 22 1 1.0562 -1.8002 -11.6873 23 1 2.1754 0.2485 -12.3435 24 1 3.3652 -1.4222 -11.0497 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.1300 -0.7209 1.2494 29 1 1.6767 -0.2075 2.1392 30 1 1.8937 -2.6779 2.1388 31 1 0.4400 -2.1638 1.2490 32 1 3.1300 -2.8850 -0.0002 33 1 1.6763 -3.9125 -0.0005 34 1 0.4400 -2.1637 -1.2494 35 1 1.8937 -2.6771 -2.1394 36 1 1.7045 1.2924 -4.8056 37 1 0.2515 0.2642 -4.8050 38 1 0.8781 0.9091 -7.3438 39 1 0.4558 1.4817 -10.6047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820939516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:12 Heat of formation + Delta-G solvation = -166.011453 kcal Electronic energy + Delta-G solvation = -20776.900377 eV Core-core repulsion = 17489.853328 eV Total energy + Delta-G solvation = -3287.047050 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.03656 -40.29898 -39.37230 -37.44556 -36.05081 -33.44170 -32.79726 -32.39556 -30.01582 -28.00257 -26.61508 -24.62356 -23.22586 -21.92762 -21.44100 -20.09696 -19.54662 -18.76948 -17.90200 -17.73859 -17.34201 -16.64435 -16.24724 -15.88489 -15.69409 -15.26433 -15.01230 -14.68686 -14.18376 -13.97012 -13.86313 -13.63841 -13.57509 -13.30446 -12.95266 -12.59876 -12.49289 -12.44138 -12.16131 -12.12705 -11.97076 -11.77213 -11.72650 -11.59048 -11.12079 -10.97396 -10.88074 -10.51936 -10.13677 -8.53887 -6.04891 1.09928 1.34905 1.37604 1.45891 1.57755 1.85011 2.29055 3.02206 3.11474 3.50213 3.68736 3.69541 3.95679 4.12396 4.17186 4.19436 4.20677 4.28413 4.35638 4.42816 4.50629 4.64943 4.81304 4.88907 4.97618 5.07949 5.15425 5.20857 5.26362 5.29107 5.35274 5.38224 5.44661 5.52273 5.67927 5.87475 6.44192 6.67037 7.01073 7.37713 7.91199 8.63221 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045074 B = 0.003448 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.045120 B = 8119.270869 C = 8541.558167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.072 4.072 3 H 0.070 0.930 4 C -0.108 4.108 5 C -0.122 4.122 6 C -0.112 4.112 7 C -0.114 4.114 8 C -0.070 4.070 9 H 0.120 0.880 10 C 0.458 3.542 11 O -0.524 6.524 12 O -0.344 6.344 13 C 0.070 3.930 14 C 0.436 3.564 15 O -0.617 6.617 16 N -0.558 5.558 17 C -0.340 4.340 18 H 0.085 0.915 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 0.999 3.001 22 H -0.269 1.269 23 H -0.269 1.269 24 H -0.270 1.270 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.400 0.600 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.061 -2.675 20.615 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.090 4.090 3 H 0.088 0.912 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.150 4.150 7 C -0.152 4.152 8 C -0.089 4.089 9 H 0.138 0.862 10 C 0.302 3.698 11 O -0.414 6.414 12 O -0.259 6.259 13 C -0.007 4.007 14 C 0.223 3.777 15 O -0.504 6.504 16 N -0.195 5.195 17 C -0.469 4.469 18 H 0.103 0.897 19 C -0.209 4.209 20 N -0.556 5.556 21 Si 0.822 3.178 22 H -0.194 1.194 23 H -0.194 1.194 24 H -0.195 1.195 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.234 0.766 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.231 -2.913 20.483 20.690 hybrid contribution -0.279 0.507 -1.280 1.405 sum -0.048 -2.406 19.202 19.353 Atomic orbital electron populations 1.22144 0.95045 1.02210 1.02500 1.20987 0.96632 0.98913 0.92509 0.91154 1.21564 1.01212 0.95693 0.96045 1.21623 1.01232 0.95221 0.97852 1.21520 1.01442 0.99155 0.92868 1.21580 1.01299 0.92052 1.00247 1.21309 1.03211 0.96520 0.87838 0.86205 1.24675 0.77171 0.82823 0.85089 1.90577 1.36504 1.27051 1.87230 1.86575 1.69234 1.55240 1.14889 1.22482 1.00299 0.95663 0.82243 1.20109 0.85525 0.86966 0.85114 1.90521 1.43058 1.29326 1.87490 1.41749 1.45843 1.27823 1.04094 1.19737 1.31398 1.11952 0.83765 0.89746 1.26143 0.96038 0.96528 1.02222 1.69673 1.35491 1.21973 1.28429 0.84845 0.78745 0.77944 0.76311 1.19389 1.19372 1.19485 0.91851 0.91568 0.93058 0.90846 0.90219 0.90222 0.91612 0.90937 0.90642 0.91489 0.91941 0.87839 0.87908 0.76609 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 8.18 71.98 0.59 -2.73 16 2 C -0.07 -1.37 2.36 -10.79 -0.03 -1.40 16 3 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 4 C -0.11 -1.42 5.45 30.59 0.17 -1.25 16 5 C -0.12 -1.51 5.65 30.59 0.17 -1.34 16 6 C -0.11 -1.68 5.92 30.59 0.18 -1.49 16 7 C -0.11 -2.41 4.86 30.59 0.15 -2.27 16 8 C -0.07 -1.60 2.41 -11.54 -0.03 -1.63 16 9 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 10 C 0.46 14.44 6.96 71.24 0.50 14.93 16 11 O -0.52 -17.90 13.41 21.96 0.29 -17.60 16 12 O -0.34 -13.09 9.66 -45.04 -0.43 -13.52 16 13 C 0.07 2.74 5.94 71.24 0.42 3.17 16 14 C 0.44 21.76 7.86 87.66 0.69 22.45 16 15 O -0.62 -35.65 16.08 15.73 0.25 -35.40 16 16 N -0.56 -29.07 5.29 -306.98 -1.62 -30.69 16 17 C -0.34 -19.26 9.68 84.04 0.81 -18.45 16 18 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 19 C -0.01 -0.46 5.50 84.92 0.47 0.01 16 20 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 21 Si 1.00 42.21 29.55 68.60 2.03 44.23 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 23 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H 0.06 1.19 4.81 -2.39 -0.01 1.18 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.36 5.52 -2.38 -0.01 1.35 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.85 6.43 -2.38 -0.02 0.83 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.45 6.43 -2.38 -0.02 1.43 16 35 H 0.06 1.57 8.11 -2.39 -0.02 1.55 16 36 H 0.10 3.64 8.13 -2.38 -0.02 3.62 16 37 H 0.10 3.63 8.13 -2.39 -0.02 3.61 16 38 H 0.40 19.65 7.90 -92.71 -0.73 18.91 16 39 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -67.77 315.16 5.22 -62.55 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.33 Total: 29.12 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 4.09 Total: 10.01 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -1.34 Total: -79.38 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: 0.11 Total: -66.53 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -67.77 5.22 -62.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820939516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.463 kcal (2) G-P(sol) polarization free energy of solvation -67.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds