Wall clock time and date at job start Mon Mar 30 2020 01:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47125 * 2 1 4 4 C 1.50703 * 109.46968 * 119.99932 * 2 1 3 5 5 O 1.21294 * 119.99983 * 94.36160 * 4 2 1 6 6 N 1.34780 * 119.99984 * 274.36027 * 4 2 1 7 7 C 1.37095 * 119.99746 * 356.97020 * 6 4 2 8 8 H 1.08001 * 120.00606 * 21.68549 * 7 6 4 9 9 C 1.38948 * 120.00019 * 201.41337 * 7 6 4 10 10 N 1.31414 * 120.00089 * 20.46657 * 9 7 6 11 11 Si 1.86799 * 120.00345 * 200.46937 * 9 7 6 12 12 H 1.48501 * 109.47352 * 59.99760 * 11 9 7 13 13 H 1.48510 * 109.47342 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47038 * 299.99727 * 11 9 7 15 15 C 1.46499 * 119.99953 * 176.96839 * 6 4 2 16 16 C 1.50706 * 109.46951 * 85.01660 * 15 6 4 17 17 O 1.20821 * 120.00008 * 359.97438 * 16 15 6 18 18 O 1.34227 * 119.99580 * 179.97438 * 16 15 6 19 19 C 1.53001 * 109.47245 * 239.99800 * 2 1 3 20 20 C 1.54261 * 110.03106 * 177.91022 * 19 2 1 21 21 C 1.54970 * 104.15723 * 217.13419 * 20 19 2 22 22 C 1.54890 * 102.77766 * 37.88982 * 21 20 19 23 23 C 1.53873 * 110.03026 * 60.68786 * 19 2 1 24 24 H 1.08998 * 109.47164 * 181.59072 * 1 2 3 25 25 H 1.09000 * 109.46820 * 301.58963 * 1 2 3 26 26 H 1.08998 * 109.46942 * 61.59123 * 1 2 3 27 27 H 0.97004 * 120.00452 * 180.02562 * 10 9 7 28 28 H 1.09000 * 109.46657 * 205.01221 * 15 6 4 29 29 H 1.08995 * 109.47320 * 325.01607 * 15 6 4 30 30 H 0.96701 * 116.99620 * 179.97438 * 18 16 15 31 31 H 1.09006 * 110.01467 * 299.29890 * 19 2 1 32 32 H 1.09001 * 110.48944 * 335.78108 * 20 19 2 33 33 H 1.08995 * 110.48579 * 98.43076 * 20 19 2 34 34 H 1.08992 * 110.72130 * 279.57420 * 21 20 19 35 35 H 1.09002 * 110.76216 * 156.22035 * 21 20 19 36 36 H 1.08996 * 110.48863 * 203.40607 * 22 21 20 37 37 H 1.08998 * 110.60241 * 80.81402 * 22 21 20 38 38 H 1.08997 * 110.03358 * 238.57157 * 23 19 2 39 39 H 1.08998 * 110.03330 * 0.02562 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3098 -1.8901 1.1789 6 7 2.1733 -0.0349 2.3883 7 6 1.9192 1.3116 2.4315 8 1 1.2909 1.7671 1.6805 9 6 2.4656 2.0894 3.4450 10 7 3.5152 1.6605 4.1093 11 14 1.7081 3.7449 3.8634 12 1 0.2961 3.5519 4.2809 13 1 2.4705 4.3720 4.9729 14 1 1.7552 4.6267 2.6695 15 6 2.5979 -0.7396 3.6004 16 6 4.1024 -0.8214 3.6329 17 8 4.7531 -0.3408 2.7354 18 8 4.7195 -1.4282 4.6590 19 6 2.0401 -0.7213 -1.2492 20 6 3.5817 -0.6832 -1.2889 21 6 3.9179 -0.5062 -2.7913 22 6 2.8087 0.4585 -3.2792 23 6 1.5485 0.0039 -2.5142 24 1 -0.3633 -1.0272 0.0285 25 1 -0.3633 0.5383 0.8754 26 1 -0.3633 0.4889 -0.9039 27 1 3.8964 2.2033 4.8171 28 1 2.2445 -0.1983 4.4780 29 1 2.1793 -1.7460 3.6012 30 1 5.6858 -1.4561 4.6356 31 1 1.6919 -1.7542 -1.2519 32 1 3.9575 0.1618 -0.7120 33 1 3.9962 -1.6182 -0.9121 34 1 3.8579 -1.4602 -3.3150 35 1 4.9031 -0.0569 -2.9165 36 1 2.6599 0.3564 -4.3542 37 1 3.0578 1.4889 -3.0258 38 1 0.9625 -0.6772 -3.1312 39 1 0.9470 0.8700 -2.2381 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825971740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:28 Heat of formation + Delta-G solvation = -139.247848 kcal Electronic energy + Delta-G solvation = -22246.880817 eV Core-core repulsion = 18960.994325 eV Total energy + Delta-G solvation = -3285.886493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.54839 -38.58833 -37.18396 -35.05470 -34.41577 -32.63768 -31.52517 -28.38140 -27.94406 -26.93182 -24.89119 -23.08170 -20.81672 -20.17825 -19.34170 -18.70692 -17.07890 -16.81486 -16.21504 -15.48988 -15.12105 -14.80813 -14.37587 -14.20078 -14.08181 -13.63223 -12.97086 -12.70754 -12.61986 -12.36653 -11.85765 -11.70807 -11.47169 -11.36290 -10.98633 -10.82417 -10.72985 -10.62882 -10.54572 -10.44086 -10.42555 -10.23608 -10.13954 -9.92179 -9.73630 -9.47484 -9.02342 -8.40291 -7.88633 -6.48080 -3.99662 3.09241 3.18211 3.19466 3.69500 3.78500 4.06668 4.34015 4.69553 4.98019 5.05706 5.07675 5.20536 5.60325 5.78499 5.84459 5.86768 5.98681 6.06512 6.13357 6.14050 6.18781 6.25777 6.27180 6.42742 6.45945 6.51693 6.58578 6.62949 6.68105 6.75548 6.80157 6.93787 7.07682 7.37733 7.63964 7.71632 8.25991 9.01141 9.28758 9.42389 9.82979 10.59652 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.007884 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.934276 B = 3550.488108 C = 4339.075381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.093 0.907 4 C 0.483 3.517 5 O -0.600 6.600 6 N -0.432 5.432 7 C -0.336 4.336 8 H 0.103 0.897 9 C 0.037 3.963 10 N -0.866 5.866 11 Si 0.922 3.078 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.160 3.840 16 C 0.497 3.503 17 O -0.501 6.501 18 O -0.539 6.539 19 C -0.070 4.070 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.121 4.121 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.271 0.729 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.389 0.611 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.958 -0.983 -5.667 6.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.111 0.889 4 C 0.272 3.728 5 O -0.486 6.486 6 N -0.151 5.151 7 C -0.463 4.463 8 H 0.121 0.879 9 C -0.168 4.168 10 N -0.504 5.504 11 Si 0.749 3.251 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.034 3.966 16 C 0.337 3.663 17 O -0.386 6.386 18 O -0.351 6.351 19 C -0.088 4.088 20 C -0.151 4.151 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.158 4.158 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.245 0.755 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.956 -1.320 -5.762 6.609 hybrid contribution 0.560 1.111 0.465 1.328 sum -2.397 -0.209 -5.297 5.818 Atomic orbital electron populations 1.21735 0.94364 1.01716 1.01841 1.21153 0.96150 1.00889 0.92757 0.88937 1.20213 0.81334 0.87153 0.84074 1.90513 1.56128 1.17112 1.84817 1.43373 1.57926 1.08291 1.05525 1.19544 1.30086 0.82360 1.14327 0.87910 1.25249 0.94240 0.99654 0.97637 1.69801 1.17892 1.39608 1.23074 0.86065 0.79126 0.81497 0.78414 1.19785 1.20991 1.19796 1.20291 0.87311 0.97500 0.91547 1.23615 0.92316 0.72435 0.77946 1.90546 1.66856 1.42813 1.38374 1.84520 1.26189 1.74473 1.49869 1.21546 0.95444 0.99328 0.92525 1.22356 0.95289 1.02500 0.94918 1.22517 0.98007 0.98823 0.96940 1.22349 0.95607 0.99401 0.98752 1.22269 0.97322 0.99973 0.96242 0.92983 0.91846 0.92516 0.91813 0.86985 0.90195 0.75513 0.90816 0.91366 0.91639 0.92121 0.92207 0.92483 0.91819 0.92382 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.83 37.16 0.33 -1.99 16 2 C -0.09 -1.74 1.17 -91.77 -0.11 -1.85 16 3 H 0.09 1.91 6.64 -51.93 -0.34 1.57 16 4 C 0.48 11.54 6.03 -10.98 -0.07 11.48 16 5 O -0.60 -15.62 15.49 5.55 0.09 -15.54 16 6 N -0.43 -10.72 2.15 -116.09 -0.25 -10.97 16 7 C -0.34 -8.28 8.74 -14.94 -0.13 -8.41 16 8 H 0.10 2.37 5.76 -52.49 -0.30 2.07 16 9 C 0.04 0.92 4.86 -17.47 -0.08 0.84 16 10 N -0.87 -22.49 9.06 55.50 0.50 -21.99 16 11 Si 0.92 19.14 29.60 -169.99 -5.03 14.11 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 15 C 0.16 3.82 5.14 -5.19 -0.03 3.79 16 16 C 0.50 12.24 6.39 36.01 0.23 12.47 16 17 O -0.50 -14.01 16.42 -18.75 -0.31 -14.32 16 18 O -0.54 -11.04 13.42 -39.25 -0.53 -11.57 16 19 C -0.07 -1.24 2.12 -89.50 -0.19 -1.43 16 20 C -0.11 -2.12 5.52 -25.03 -0.14 -2.26 16 21 C -0.13 -1.86 6.91 -24.69 -0.17 -2.03 16 22 C -0.12 -1.67 6.83 -25.07 -0.17 -1.84 16 23 C -0.12 -1.72 5.90 -25.61 -0.15 -1.87 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 1.08 7.51 -51.93 -0.39 0.69 16 26 H 0.06 0.79 6.47 -51.93 -0.34 0.46 16 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.11 2.64 6.76 -51.93 -0.35 2.29 16 29 H 0.08 1.80 7.62 -51.93 -0.40 1.40 16 30 H 0.39 6.27 9.10 45.56 0.41 6.69 16 31 H 0.07 1.39 7.86 -51.93 -0.41 0.98 16 32 H 0.07 1.45 7.84 -51.93 -0.41 1.04 16 33 H 0.06 1.35 8.09 -51.93 -0.42 0.93 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.91 6.38 -51.93 -0.33 0.58 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -30.72 313.10 -6.43 -37.16 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -4.94 Total: 11.51 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.68 Total: 6.89 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.25 Total: -32.96 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -0.75 Total: -41.42 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.72 -6.43 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825971740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.093 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds