Wall clock time and date at job start Mon Mar 30 2020 01:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47125 * 2 1 4 4 C 1.50703 * 109.46968 * 119.99932 * 2 1 3 5 5 O 1.21294 * 119.99983 * 94.36160 * 4 2 1 6 6 N 1.34780 * 119.99984 * 274.36027 * 4 2 1 7 7 C 1.37095 * 119.99746 * 356.97020 * 6 4 2 8 8 H 1.08001 * 120.00606 * 21.68549 * 7 6 4 9 9 C 1.38948 * 120.00019 * 201.41337 * 7 6 4 10 10 N 1.31414 * 120.00089 * 20.46657 * 9 7 6 11 11 Si 1.86799 * 120.00345 * 200.46937 * 9 7 6 12 12 H 1.48501 * 109.47352 * 59.99760 * 11 9 7 13 13 H 1.48510 * 109.47342 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47038 * 299.99727 * 11 9 7 15 15 C 1.46499 * 119.99953 * 176.96839 * 6 4 2 16 16 C 1.50706 * 109.46951 * 85.01660 * 15 6 4 17 17 O 1.20821 * 120.00008 * 359.97438 * 16 15 6 18 18 O 1.34227 * 119.99580 * 179.97438 * 16 15 6 19 19 C 1.53001 * 109.47245 * 239.99800 * 2 1 3 20 20 C 1.54261 * 110.03106 * 177.91022 * 19 2 1 21 21 C 1.54970 * 104.15723 * 217.13419 * 20 19 2 22 22 C 1.54890 * 102.77766 * 37.88982 * 21 20 19 23 23 C 1.53873 * 110.03026 * 60.68786 * 19 2 1 24 24 H 1.08998 * 109.47164 * 181.59072 * 1 2 3 25 25 H 1.09000 * 109.46820 * 301.58963 * 1 2 3 26 26 H 1.08998 * 109.46942 * 61.59123 * 1 2 3 27 27 H 0.97004 * 120.00452 * 180.02562 * 10 9 7 28 28 H 1.09000 * 109.46657 * 205.01221 * 15 6 4 29 29 H 1.08995 * 109.47320 * 325.01607 * 15 6 4 30 30 H 0.96701 * 116.99620 * 179.97438 * 18 16 15 31 31 H 1.09006 * 110.01467 * 299.29890 * 19 2 1 32 32 H 1.09001 * 110.48944 * 335.78108 * 20 19 2 33 33 H 1.08995 * 110.48579 * 98.43076 * 20 19 2 34 34 H 1.08992 * 110.72130 * 279.57420 * 21 20 19 35 35 H 1.09002 * 110.76216 * 156.22035 * 21 20 19 36 36 H 1.08996 * 110.48863 * 203.40607 * 22 21 20 37 37 H 1.08998 * 110.60241 * 80.81402 * 22 21 20 38 38 H 1.08997 * 110.03358 * 238.57157 * 23 19 2 39 39 H 1.08998 * 110.03330 * 0.02562 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3098 -1.8901 1.1789 6 7 2.1733 -0.0349 2.3883 7 6 1.9192 1.3116 2.4315 8 1 1.2909 1.7671 1.6805 9 6 2.4656 2.0894 3.4450 10 7 3.5152 1.6605 4.1093 11 14 1.7081 3.7449 3.8634 12 1 0.2961 3.5519 4.2809 13 1 2.4705 4.3720 4.9729 14 1 1.7552 4.6267 2.6695 15 6 2.5979 -0.7396 3.6004 16 6 4.1024 -0.8214 3.6329 17 8 4.7531 -0.3408 2.7354 18 8 4.7195 -1.4282 4.6590 19 6 2.0401 -0.7213 -1.2492 20 6 3.5817 -0.6832 -1.2889 21 6 3.9179 -0.5062 -2.7913 22 6 2.8087 0.4585 -3.2792 23 6 1.5485 0.0039 -2.5142 24 1 -0.3633 -1.0272 0.0285 25 1 -0.3633 0.5383 0.8754 26 1 -0.3633 0.4889 -0.9039 27 1 3.8964 2.2033 4.8171 28 1 2.2445 -0.1983 4.4780 29 1 2.1793 -1.7460 3.6012 30 1 5.6858 -1.4561 4.6356 31 1 1.6919 -1.7542 -1.2519 32 1 3.9575 0.1618 -0.7120 33 1 3.9962 -1.6182 -0.9121 34 1 3.8579 -1.4602 -3.3150 35 1 4.9031 -0.0569 -2.9165 36 1 2.6599 0.3564 -4.3542 37 1 3.0578 1.4889 -3.0258 38 1 0.9625 -0.6772 -3.1312 39 1 0.9470 0.8700 -2.2381 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825971740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:27 Heat of formation + Delta-G solvation = -158.086011 kcal Electronic energy + Delta-G solvation = -22247.697701 eV Core-core repulsion = 18960.994325 eV Total energy + Delta-G solvation = -3286.703377 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.36223 -40.35918 -38.72311 -36.92456 -36.35938 -34.12934 -33.42232 -29.88085 -29.54756 -28.27583 -26.77611 -24.66320 -22.58866 -21.47437 -21.07017 -20.23474 -18.89825 -18.63223 -18.02965 -17.38169 -16.65216 -16.36722 -16.17659 -15.86989 -15.69212 -15.36293 -14.50854 -14.16247 -14.03190 -14.00366 -13.51655 -13.46484 -13.21225 -12.94949 -12.65947 -12.43651 -12.22366 -12.13868 -12.05405 -11.94747 -11.83013 -11.79016 -11.48490 -11.46267 -11.34249 -11.12611 -10.94320 -10.26663 -9.81712 -8.35825 -5.93529 1.43909 1.49811 1.58762 1.80825 1.90587 2.31328 2.55830 2.92237 3.18095 3.74442 3.80368 3.85803 4.20990 4.33790 4.41573 4.47225 4.60551 4.62633 4.69008 4.76014 4.83237 4.87895 4.89418 4.91387 5.04061 5.09830 5.12029 5.20803 5.31611 5.33653 5.43031 5.51560 5.57809 5.63527 5.78145 5.94604 6.35406 7.10923 7.42252 7.54320 7.94646 8.71725 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.007884 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.934276 B = 3550.488108 C = 4339.075381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 H 0.081 0.919 4 C 0.470 3.530 5 O -0.630 6.630 6 N -0.444 5.444 7 C -0.350 4.350 8 H 0.116 0.884 9 C -0.007 4.007 10 N -0.896 5.896 11 Si 0.992 3.008 12 H -0.260 1.260 13 H -0.290 1.290 14 H -0.267 1.267 15 C 0.155 3.845 16 C 0.500 3.500 17 O -0.542 6.542 18 O -0.526 6.526 19 C -0.068 4.068 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.113 4.113 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.269 0.731 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.410 0.590 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.434 0.151 -7.160 8.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.106 4.106 3 H 0.099 0.901 4 C 0.261 3.739 5 O -0.518 6.518 6 N -0.162 5.162 7 C -0.477 4.477 8 H 0.133 0.867 9 C -0.208 4.208 10 N -0.534 5.534 11 Si 0.816 3.184 12 H -0.185 1.185 13 H -0.216 1.216 14 H -0.192 1.192 15 C 0.029 3.971 16 C 0.342 3.658 17 O -0.431 6.431 18 O -0.339 6.339 19 C -0.087 4.087 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.151 4.151 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.269 0.731 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.436 -0.199 -7.240 8.493 hybrid contribution 1.118 0.656 1.009 1.643 sum -3.318 0.457 -6.231 7.074 Atomic orbital electron populations 1.21708 0.91702 1.02048 1.03376 1.21195 0.98265 0.99655 0.91469 0.90053 1.21064 0.80688 0.87079 0.85037 1.90475 1.57379 1.18512 1.85435 1.43633 1.57912 1.08699 1.05984 1.19939 1.30311 0.82474 1.14929 0.86689 1.26147 0.94258 1.03171 0.97263 1.69917 1.19063 1.40925 1.23511 0.84998 0.78517 0.77029 0.77867 1.18486 1.21574 1.19224 1.20367 0.87191 0.97883 0.91686 1.23735 0.92670 0.71648 0.77786 1.90525 1.67741 1.44805 1.39993 1.84449 1.28075 1.73318 1.48023 1.21559 0.94445 0.98998 0.93712 1.22285 0.96329 0.99203 0.97497 1.22503 0.99136 1.00278 0.93707 1.22353 0.94161 0.98661 1.00415 1.22249 0.98022 1.00391 0.94405 0.93104 0.92397 0.88986 0.92124 0.86969 0.89445 0.73107 0.92082 0.94821 0.94906 0.90666 0.91656 0.89397 0.91965 0.90077 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 8.83 71.98 0.64 -3.50 16 2 C -0.08 -3.33 1.17 -11.54 -0.01 -3.34 16 3 H 0.08 3.36 6.64 -2.39 -0.02 3.35 16 4 C 0.47 23.05 6.03 87.66 0.53 23.58 16 5 O -0.63 -33.97 15.49 -3.07 -0.05 -34.02 16 6 N -0.44 -22.47 2.15 -639.59 -1.38 -23.85 16 7 C -0.35 -17.30 8.74 84.04 0.73 -16.57 16 8 H 0.12 5.26 5.76 -2.91 -0.02 5.24 16 9 C -0.01 -0.32 4.86 84.93 0.41 0.09 16 10 N -0.90 -47.09 9.06 21.66 0.20 -46.90 16 11 Si 0.99 38.78 29.60 68.60 2.03 40.81 16 12 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 13 H -0.29 -11.50 7.11 99.48 0.71 -10.79 16 14 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 15 C 0.15 7.59 5.14 85.64 0.44 8.03 16 16 C 0.50 25.21 6.39 71.24 0.45 25.66 16 17 O -0.54 -31.37 16.42 21.98 0.36 -31.01 16 18 O -0.53 -21.58 13.42 -51.39 -0.69 -22.27 16 19 C -0.07 -2.40 2.12 -10.07 -0.02 -2.42 16 20 C -0.12 -4.45 5.52 31.70 0.17 -4.28 16 21 C -0.12 -3.36 6.91 31.91 0.22 -3.14 16 22 C -0.12 -2.82 6.83 31.67 0.22 -2.60 16 23 C -0.11 -2.88 5.90 31.32 0.18 -2.69 16 24 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 1.89 7.51 -2.39 -0.02 1.87 16 26 H 0.09 2.25 6.47 -2.39 -0.02 2.23 16 27 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 28 H 0.11 5.42 6.76 -2.39 -0.02 5.40 16 29 H 0.09 4.05 7.62 -2.39 -0.02 4.03 16 30 H 0.41 13.08 9.10 -74.06 -0.67 12.41 16 31 H 0.06 2.29 7.86 -2.38 -0.02 2.27 16 32 H 0.03 1.49 7.84 -2.39 -0.02 1.47 16 33 H 0.03 1.42 8.09 -2.39 -0.02 1.40 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 1.82 6.38 -2.39 -0.02 1.81 16 Total: -1.00 -68.03 313.10 4.83 -63.20 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.39 Total: 35.22 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 3.97 Total: 18.81 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -1.18 Total: -70.75 kcal Atomic # 8 Polarization: -86.92 SS G_CDS: -0.38 Total: -87.30 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -68.03 4.83 -63.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825971740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.882 kcal (2) G-P(sol) polarization free energy of solvation -68.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds