Wall clock time and date at job start Mon Mar 30 2020 01:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.53006 * 109.46674 * 240.00082 * 2 1 3 5 5 C 1.50697 * 109.47062 * 65.00475 * 4 2 1 6 6 O 1.20830 * 120.00096 * 359.97438 * 5 4 2 7 7 O 1.34227 * 120.00331 * 179.97438 * 5 4 2 8 8 C 1.50701 * 109.47065 * 120.00451 * 2 1 3 9 9 O 1.21295 * 120.00072 * 105.42473 * 8 2 1 10 10 N 1.34777 * 120.00210 * 285.42774 * 8 2 1 11 11 C 1.37099 * 119.99334 * 3.70945 * 10 8 2 12 12 H 1.08006 * 119.99625 * 125.15954 * 11 10 8 13 13 C 1.38946 * 120.00612 * 305.15257 * 11 10 8 14 14 N 1.31409 * 119.99937 * 338.75944 * 13 11 10 15 15 Si 1.86799 * 120.00317 * 158.75245 * 13 11 10 16 16 H 1.48501 * 109.46916 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47300 * 120.00193 * 15 13 11 18 18 H 1.48503 * 109.47440 * 240.00399 * 15 13 11 19 19 C 1.46500 * 120.00292 * 183.71398 * 10 8 2 20 20 C 1.55238 * 110.57769 * 235.26823 * 19 10 8 21 21 C 1.54892 * 102.58496 * 203.33821 * 20 19 10 22 22 C 1.54274 * 104.31296 * 37.93410 * 21 20 19 23 23 C 1.53874 * 106.59666 * 336.32178 * 22 21 20 24 24 H 1.09001 * 109.47054 * 53.35122 * 1 2 3 25 25 H 1.09000 * 109.47123 * 173.34978 * 1 2 3 26 26 H 1.08997 * 109.46974 * 293.35308 * 1 2 3 27 27 H 1.08995 * 109.46521 * 184.99905 * 4 2 1 28 28 H 1.08995 * 109.46960 * 304.99898 * 4 2 1 29 29 H 0.96693 * 117.00571 * 180.02562 * 7 5 4 30 30 H 0.97003 * 120.00206 * 179.97438 * 14 13 11 31 31 H 1.08994 * 110.43075 * 357.85722 * 19 10 8 32 32 H 1.09000 * 110.89534 * 85.05255 * 20 19 10 33 33 H 1.08999 * 110.76716 * 321.56858 * 20 19 10 34 34 H 1.09002 * 110.48389 * 279.18870 * 21 20 19 35 35 H 1.08999 * 110.48573 * 156.68096 * 21 20 19 36 36 H 1.08994 * 110.02804 * 95.60671 * 22 21 20 37 37 H 1.08998 * 110.03112 * 216.99125 * 22 21 20 38 38 H 1.08997 * 110.02824 * 119.28529 * 23 22 21 39 39 H 1.08999 * 110.03480 * 240.66571 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4766 6 8 1.0134 1.0832 -2.3637 7 8 1.9838 -0.3894 -3.6952 8 6 2.0324 -0.7105 1.2304 9 8 2.4980 -1.8268 1.1386 10 7 1.9643 -0.1057 2.4329 11 6 1.3692 1.1240 2.5489 12 1 0.5653 1.2704 3.2551 13 6 1.8003 2.1819 1.7580 14 7 2.9997 2.1551 1.2216 15 14 0.6751 3.6423 1.4570 16 1 -0.6115 3.4305 2.1678 17 1 1.3225 4.8788 1.9640 18 1 0.4198 3.7787 0.0005 19 6 2.5262 -0.7621 3.6160 20 6 1.4526 -0.8915 4.7297 21 6 2.3108 -1.0072 6.0140 22 6 3.4888 -0.0404 5.7738 23 6 3.6257 0.1154 4.2491 24 1 -0.3633 0.6134 -0.8245 25 1 -0.3633 -1.0207 -0.1190 26 1 -0.3633 0.4074 0.9435 27 1 3.1262 -0.7995 -1.2057 28 1 1.6053 -1.7198 -1.2952 29 1 1.7061 0.1441 -4.4523 30 1 3.3005 2.8935 0.6691 31 1 2.9241 -1.7424 3.3542 32 1 0.8495 -1.7880 4.5861 33 1 0.8229 -0.0025 4.7647 34 1 2.6739 -2.0273 6.1395 35 1 1.7353 -0.6980 6.8865 36 1 3.2773 0.9264 6.2305 37 1 4.4053 -0.4577 6.1910 38 1 3.4808 1.1579 3.9659 39 1 4.6091 -0.2258 3.9257 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827247642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:44 Heat of formation + Delta-G solvation = -138.917612 kcal Electronic energy + Delta-G solvation = -22194.267866 eV Core-core repulsion = 18908.395693 eV Total energy + Delta-G solvation = -3285.872172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.99256 -38.94826 -36.87426 -35.80399 -34.31509 -33.08744 -31.40542 -27.95366 -27.87468 -26.75042 -24.93635 -23.15495 -21.02541 -19.97150 -19.26289 -18.79059 -17.79371 -16.74748 -15.93629 -15.56610 -15.51092 -15.05157 -14.58429 -14.26918 -13.79258 -13.42823 -13.04155 -12.68782 -12.62730 -12.27703 -11.87793 -11.75974 -11.47334 -11.20511 -11.14444 -11.01198 -10.87898 -10.60750 -10.49829 -10.40329 -10.36129 -10.27473 -10.13677 -9.93489 -9.86216 -9.56107 -8.72953 -8.12091 -7.24682 -6.42713 -4.23922 2.65724 3.15774 3.27125 3.30865 3.44406 4.03773 4.16179 4.82681 4.87918 5.35005 5.39931 5.44762 5.53636 5.78463 5.93602 6.11919 6.16459 6.20133 6.21972 6.28044 6.31010 6.40292 6.50181 6.51379 6.54496 6.59482 6.73614 6.75252 6.93118 6.98480 7.08503 7.16987 7.30759 7.34901 7.46722 8.03183 8.30928 8.61963 8.91590 9.58352 10.01518 10.59737 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.007688 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.533018 B = 3641.046225 C = 4486.478845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.139 0.861 4 C -0.091 4.091 5 C 0.477 3.523 6 O -0.510 6.510 7 O -0.524 6.524 8 C 0.522 3.478 9 O -0.615 6.615 10 N -0.443 5.443 11 C -0.335 4.335 12 H 0.083 0.917 13 C 0.057 3.943 14 N -0.851 5.851 15 Si 0.894 3.106 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.134 3.866 20 C -0.128 4.128 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.124 4.124 24 H 0.061 0.939 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.401 0.599 30 H 0.271 0.729 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 -2.102 -0.459 2.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.156 0.844 4 C -0.129 4.129 5 C 0.320 3.680 6 O -0.397 6.397 7 O -0.336 6.336 8 C 0.313 3.687 9 O -0.502 6.502 10 N -0.162 5.162 11 C -0.463 4.463 12 H 0.101 0.899 13 C -0.149 4.149 14 N -0.487 5.487 15 Si 0.719 3.281 16 H -0.189 1.189 17 H -0.208 1.208 18 H -0.194 1.194 19 C 0.030 3.970 20 C -0.166 4.166 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.162 4.162 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.258 0.742 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.568 -2.476 -0.199 2.938 hybrid contribution -0.487 1.309 -0.717 1.570 sum -2.055 -1.167 -0.916 2.535 Atomic orbital electron populations 1.21794 0.94194 1.00361 1.03598 1.21348 0.96951 1.04422 0.89691 0.84362 1.21223 1.04004 0.99310 0.88392 1.23911 0.75522 0.84094 0.84427 1.90684 1.37472 1.24725 1.86857 1.84587 1.75286 1.56462 1.17236 1.20132 0.78962 0.84433 0.85216 1.90489 1.51863 1.20845 1.86975 1.43239 1.51519 1.16862 1.04560 1.19115 1.15453 0.86079 1.25643 0.89914 1.25498 0.94651 0.97939 0.96816 1.70015 1.14972 1.32671 1.31034 0.86394 0.81022 0.81169 0.79495 1.18888 1.20803 1.19364 1.21846 0.92509 0.96209 0.86481 1.22792 0.98048 1.01497 0.94275 1.22272 0.96963 0.98965 0.97688 1.22068 0.97396 0.98865 0.97358 1.22333 0.97852 1.03135 0.92912 0.92016 0.94428 0.90531 0.87918 0.88125 0.74186 0.91920 0.90269 0.92700 0.90490 0.92422 0.92528 0.92446 0.93046 0.89228 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.69 37.16 0.32 -2.62 16 2 C -0.10 -2.33 1.47 -91.76 -0.13 -2.46 16 3 H 0.14 3.43 3.97 -51.93 -0.21 3.22 16 4 C -0.09 -1.79 4.61 -27.88 -0.13 -1.92 16 5 C 0.48 8.62 8.08 36.00 0.29 8.91 16 6 O -0.51 -10.54 14.74 -18.75 -0.28 -10.82 16 7 O -0.52 -7.42 13.42 -39.25 -0.53 -7.94 16 8 C 0.52 12.96 6.48 -10.98 -0.07 12.89 16 9 O -0.62 -16.21 15.45 5.54 0.09 -16.13 16 10 N -0.44 -10.65 2.43 -105.77 -0.26 -10.91 16 11 C -0.34 -8.04 5.53 -14.93 -0.08 -8.12 16 12 H 0.08 1.96 6.83 -52.48 -0.36 1.60 16 13 C 0.06 1.39 3.33 -17.47 -0.06 1.33 16 14 N -0.85 -21.72 11.60 55.50 0.64 -21.08 16 15 Si 0.89 19.48 29.60 -169.99 -5.03 14.44 16 16 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C 0.13 2.90 3.26 -66.08 -0.22 2.68 16 20 C -0.13 -2.35 6.44 -24.55 -0.16 -2.51 16 21 C -0.12 -1.87 6.82 -25.07 -0.17 -2.04 16 22 C -0.12 -1.95 6.80 -25.61 -0.17 -2.12 16 23 C -0.12 -2.52 6.42 -25.61 -0.16 -2.68 16 24 H 0.06 1.26 6.11 -51.93 -0.32 0.94 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 1.63 6.56 -51.93 -0.34 1.29 16 27 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 28 H 0.10 1.86 8.09 -51.93 -0.42 1.44 16 29 H 0.40 3.73 9.10 45.56 0.41 4.15 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.08 1.82 6.98 -51.93 -0.36 1.46 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.48 6.54 -51.93 -0.34 1.14 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 2.07 7.11 -51.93 -0.37 1.70 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 311.23 15.07 4.69 4.69 Total: -1.00 -28.93 311.23 -6.23 -35.16 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.82 Total: 11.25 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -0.74 Total: 1.32 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.39 Total: -31.98 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.72 Total: -34.89 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.93 -6.23 -35.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827247642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.755 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds