Wall clock time and date at job start Mon Mar 30 2020 01:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46641 * 2 1 4 4 C 1.52999 * 109.47076 * 119.99837 * 2 1 3 5 5 C 1.50700 * 109.47084 * 294.99871 * 4 2 1 6 6 O 1.20830 * 120.00016 * 0.02562 * 5 4 2 7 7 O 1.34229 * 120.00036 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.47137 * 239.99738 * 2 1 3 9 9 O 1.21286 * 120.00356 * 248.17681 * 8 2 1 10 10 N 1.34781 * 119.99754 * 68.17902 * 8 2 1 11 11 C 1.37103 * 119.99721 * 176.22003 * 10 8 2 12 12 H 1.07999 * 119.99699 * 224.16300 * 11 10 8 13 13 C 1.38941 * 119.99726 * 44.16793 * 11 10 8 14 14 N 1.31412 * 120.00593 * 19.10228 * 13 11 10 15 15 Si 1.86802 * 119.99794 * 199.10449 * 13 11 10 16 16 H 1.48497 * 109.47237 * 59.99787 * 15 13 11 17 17 H 1.48502 * 109.47455 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46929 * 299.99569 * 15 13 11 19 19 C 1.46498 * 120.00004 * 355.95208 * 10 8 2 20 20 C 1.54268 * 110.02715 * 237.83448 * 19 10 8 21 21 C 1.54964 * 104.15930 * 217.13486 * 20 19 10 22 22 C 1.54892 * 102.77992 * 37.89032 * 21 20 19 23 23 C 1.53875 * 110.03506 * 120.61856 * 19 10 8 24 24 H 1.09003 * 109.47165 * 185.65709 * 1 2 3 25 25 H 1.09000 * 109.47077 * 305.65437 * 1 2 3 26 26 H 1.09006 * 109.47120 * 65.65830 * 1 2 3 27 27 H 1.08996 * 109.47090 * 55.00120 * 4 2 1 28 28 H 1.08998 * 109.46882 * 175.00188 * 4 2 1 29 29 H 0.96700 * 116.99966 * 180.02562 * 7 5 4 30 30 H 0.96993 * 120.00516 * 184.96393 * 14 13 11 31 31 H 1.08999 * 110.01809 * 359.22775 * 19 10 8 32 32 H 1.09000 * 110.48853 * 335.78505 * 20 19 10 33 33 H 1.09003 * 110.48426 * 98.42714 * 20 19 10 34 34 H 1.09004 * 110.72408 * 279.57318 * 21 20 19 35 35 H 1.09004 * 110.92414 * 156.29853 * 21 20 19 36 36 H 1.08996 * 110.48719 * 203.41013 * 22 21 20 37 37 H 1.08998 * 110.60101 * 80.81084 * 22 21 20 38 38 H 1.08996 * 110.03276 * 238.56762 * 23 19 10 39 39 H 1.09001 * 110.02838 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0133 1.0832 2.3637 7 8 1.9830 -0.3899 3.6952 8 6 2.0323 -0.7105 -1.2304 9 8 2.6026 -1.7757 -1.1253 10 7 1.8479 -0.1620 -2.4477 11 6 2.3722 -0.7691 -3.5596 12 1 2.8737 -0.1780 -4.3116 13 6 2.2582 -2.1446 -3.7189 14 7 1.3551 -2.8126 -3.0369 15 14 3.3889 -3.0446 -4.9026 16 1 4.8004 -2.8474 -4.4855 17 1 3.0663 -4.4941 -4.8900 18 1 3.1983 -2.5076 -6.2740 19 6 1.0822 1.0795 -2.5834 20 6 -0.1141 0.8614 -3.5327 21 6 -0.2196 2.1913 -4.3212 22 6 1.2640 2.5799 -4.5378 23 6 1.9579 2.1719 -3.2218 24 1 -0.3634 -1.0227 0.1013 25 1 -0.3633 0.5990 0.8350 26 1 -0.3634 0.4236 -0.9364 27 1 1.6054 -1.7197 1.2952 28 1 3.1263 -0.7994 1.2056 29 1 1.7046 0.1432 4.4524 30 1 1.3226 -3.7803 -3.0932 31 1 0.7284 1.4083 -1.6062 32 1 0.0832 0.0309 -4.2105 33 1 -1.0256 0.6816 -2.9627 34 1 -0.7354 2.9493 -3.7316 35 1 -0.7224 2.0388 -5.2762 36 1 1.3572 3.6535 -4.7013 37 1 1.6860 2.0288 -5.3783 38 1 2.0284 3.0311 -2.5548 39 1 2.9528 1.7784 -3.4302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827247649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:46 Heat of formation + Delta-G solvation = -126.959920 kcal Electronic energy + Delta-G solvation = -22103.942802 eV Core-core repulsion = 18818.589154 eV Total energy + Delta-G solvation = -3285.353648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22290 -38.98894 -36.83655 -36.03135 -33.81810 -33.10269 -31.30605 -28.24870 -27.85982 -26.76389 -25.00881 -23.10254 -21.02614 -20.04353 -19.59761 -18.73864 -17.99250 -16.82359 -15.97261 -15.79850 -15.40202 -15.04256 -14.59930 -14.24216 -13.79039 -13.39069 -12.98000 -12.94800 -12.69828 -12.33971 -11.97328 -11.66383 -11.37750 -11.17226 -11.05933 -10.94452 -10.78510 -10.62206 -10.50711 -10.45749 -10.42766 -10.32878 -10.19441 -10.13725 -9.98906 -9.62148 -8.64828 -7.94425 -7.02950 -6.02196 -3.80309 2.40931 3.23639 3.35444 3.41700 3.45275 4.23108 4.42222 4.96753 5.11892 5.22138 5.29089 5.37184 5.45440 5.56814 5.66873 5.80978 5.95569 6.05867 6.10030 6.13794 6.18327 6.20443 6.28570 6.35832 6.39833 6.47528 6.49529 6.58789 6.64893 6.68709 6.80641 6.89746 7.00645 7.27030 7.70803 8.07045 8.35971 9.14246 9.22559 9.74566 10.35263 11.04185 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.007889 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.826855 B = 3548.316967 C = 4838.596733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.096 4.096 3 H 0.084 0.916 4 C -0.090 4.090 5 C 0.479 3.521 6 O -0.518 6.518 7 O -0.520 6.520 8 C 0.481 3.519 9 O -0.537 6.537 10 N -0.444 5.444 11 C -0.340 4.340 12 H 0.077 0.923 13 C 0.074 3.926 14 N -0.828 5.828 15 Si 0.902 3.098 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.279 1.279 19 C 0.120 3.880 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.132 4.132 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.403 0.597 30 H 0.262 0.738 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 7.889 5.476 9.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.128 4.128 5 C 0.323 3.677 6 O -0.406 6.406 7 O -0.332 6.332 8 C 0.268 3.732 9 O -0.415 6.415 10 N -0.165 5.165 11 C -0.467 4.467 12 H 0.094 0.906 13 C -0.136 4.136 14 N -0.462 5.462 15 Si 0.729 3.271 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.205 1.205 19 C 0.015 3.985 20 C -0.163 4.163 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.171 4.171 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.261 0.739 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.924 7.185 5.140 9.041 hybrid contribution 0.252 -0.129 -0.006 0.283 sum -1.672 7.056 5.134 8.885 Atomic orbital electron populations 1.22080 0.93700 1.02355 1.02935 1.21071 0.97536 0.99931 0.93256 0.89807 1.21156 1.04364 0.99966 0.87283 1.23924 0.75288 0.83855 0.84639 1.90657 1.37822 1.25107 1.87051 1.84598 1.74977 1.56415 1.17174 1.19687 0.83106 0.86924 0.83476 1.90523 1.44096 1.21423 1.85442 1.43288 1.46974 1.21283 1.04962 1.18780 1.36274 0.90812 1.00831 0.90579 1.25141 0.94550 0.97609 0.96335 1.69878 1.28979 1.07636 1.39690 0.86459 0.81712 0.78565 0.80367 1.20213 1.21407 1.20524 1.21941 0.91425 0.86992 0.98147 1.22657 0.96963 0.97791 0.98860 1.22457 0.96340 0.97722 0.99593 1.22255 0.95676 0.99247 0.98281 1.22484 1.00669 0.97690 0.96256 0.92626 0.91628 0.91171 0.87049 0.87339 0.73920 0.92786 0.90327 0.89042 0.92971 0.92518 0.92384 0.92973 0.91652 0.92936 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.36 37.16 0.31 -2.47 16 2 C -0.10 -1.84 1.53 -91.77 -0.14 -1.98 16 3 H 0.08 1.54 7.38 -51.93 -0.38 1.16 16 4 C -0.09 -1.53 4.59 -27.88 -0.13 -1.66 16 5 C 0.48 7.19 8.07 36.01 0.29 7.48 16 6 O -0.52 -8.72 14.73 -18.75 -0.28 -9.00 16 7 O -0.52 -6.20 13.42 -39.25 -0.53 -6.73 16 8 C 0.48 11.68 6.37 -10.98 -0.07 11.61 16 9 O -0.54 -15.05 13.59 5.55 0.08 -14.97 16 10 N -0.44 -10.61 2.44 -106.55 -0.26 -10.87 16 11 C -0.34 -8.96 7.38 -14.93 -0.11 -9.07 16 12 H 0.08 1.96 7.21 -52.49 -0.38 1.58 16 13 C 0.07 2.03 4.36 -17.47 -0.08 1.96 16 14 N -0.83 -23.88 11.67 55.50 0.65 -23.23 16 15 Si 0.90 21.66 29.60 -169.99 -5.03 16.63 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.12 2.34 2.32 -66.81 -0.15 2.18 16 20 C -0.12 -2.34 6.24 -25.03 -0.16 -2.49 16 21 C -0.12 -1.88 6.91 -24.70 -0.17 -2.05 16 22 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 23 C -0.13 -2.30 6.22 -25.61 -0.16 -2.46 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.11 6.08 -51.93 -0.32 0.79 16 26 H 0.07 1.28 4.56 -51.93 -0.24 1.04 16 27 H 0.11 1.95 8.13 -51.93 -0.42 1.53 16 28 H 0.11 1.83 8.08 -51.93 -0.42 1.41 16 29 H 0.40 2.86 9.10 45.56 0.41 3.27 16 30 H 0.26 7.39 8.32 -40.82 -0.34 7.05 16 31 H 0.08 1.45 4.24 -51.93 -0.22 1.23 16 32 H 0.09 2.04 7.02 -51.93 -0.36 1.67 16 33 H 0.05 0.94 7.47 -51.93 -0.39 0.55 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.42 6.98 -51.93 -0.36 1.06 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -32.18 309.36 -6.19 -38.37 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.75 Total: 6.06 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.74 Total: -0.92 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.39 Total: -34.10 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.73 Total: -30.70 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.18 -6.19 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827247649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.591 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds