Wall clock time and date at job start Mon Mar 30 2020 01:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46641 * 2 1 4 4 C 1.52999 * 109.47076 * 119.99837 * 2 1 3 5 5 C 1.50700 * 109.47084 * 294.99871 * 4 2 1 6 6 O 1.20830 * 120.00016 * 0.02562 * 5 4 2 7 7 O 1.34229 * 120.00036 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.47137 * 239.99738 * 2 1 3 9 9 O 1.21286 * 120.00356 * 248.17681 * 8 2 1 10 10 N 1.34781 * 119.99754 * 68.17902 * 8 2 1 11 11 C 1.37103 * 119.99721 * 176.22003 * 10 8 2 12 12 H 1.07999 * 119.99699 * 224.16300 * 11 10 8 13 13 C 1.38941 * 119.99726 * 44.16793 * 11 10 8 14 14 N 1.31412 * 120.00593 * 19.10228 * 13 11 10 15 15 Si 1.86802 * 119.99794 * 199.10449 * 13 11 10 16 16 H 1.48497 * 109.47237 * 59.99787 * 15 13 11 17 17 H 1.48502 * 109.47455 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46929 * 299.99569 * 15 13 11 19 19 C 1.46498 * 120.00004 * 355.95208 * 10 8 2 20 20 C 1.54268 * 110.02715 * 237.83448 * 19 10 8 21 21 C 1.54964 * 104.15930 * 217.13486 * 20 19 10 22 22 C 1.54892 * 102.77992 * 37.89032 * 21 20 19 23 23 C 1.53875 * 110.03506 * 120.61856 * 19 10 8 24 24 H 1.09003 * 109.47165 * 185.65709 * 1 2 3 25 25 H 1.09000 * 109.47077 * 305.65437 * 1 2 3 26 26 H 1.09006 * 109.47120 * 65.65830 * 1 2 3 27 27 H 1.08996 * 109.47090 * 55.00120 * 4 2 1 28 28 H 1.08998 * 109.46882 * 175.00188 * 4 2 1 29 29 H 0.96700 * 116.99966 * 180.02562 * 7 5 4 30 30 H 0.96993 * 120.00516 * 184.96393 * 14 13 11 31 31 H 1.08999 * 110.01809 * 359.22775 * 19 10 8 32 32 H 1.09000 * 110.48853 * 335.78505 * 20 19 10 33 33 H 1.09003 * 110.48426 * 98.42714 * 20 19 10 34 34 H 1.09004 * 110.72408 * 279.57318 * 21 20 19 35 35 H 1.09004 * 110.92414 * 156.29853 * 21 20 19 36 36 H 1.08996 * 110.48719 * 203.41013 * 22 21 20 37 37 H 1.08998 * 110.60101 * 80.81084 * 22 21 20 38 38 H 1.08996 * 110.03276 * 238.56762 * 23 19 10 39 39 H 1.09001 * 110.02838 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0133 1.0832 2.3637 7 8 1.9830 -0.3899 3.6952 8 6 2.0323 -0.7105 -1.2304 9 8 2.6026 -1.7757 -1.1253 10 7 1.8479 -0.1620 -2.4477 11 6 2.3722 -0.7691 -3.5596 12 1 2.8737 -0.1780 -4.3116 13 6 2.2582 -2.1446 -3.7189 14 7 1.3551 -2.8126 -3.0369 15 14 3.3889 -3.0446 -4.9026 16 1 4.8004 -2.8474 -4.4855 17 1 3.0663 -4.4941 -4.8900 18 1 3.1983 -2.5076 -6.2740 19 6 1.0822 1.0795 -2.5834 20 6 -0.1141 0.8614 -3.5327 21 6 -0.2196 2.1913 -4.3212 22 6 1.2640 2.5799 -4.5378 23 6 1.9579 2.1719 -3.2218 24 1 -0.3634 -1.0227 0.1013 25 1 -0.3633 0.5990 0.8350 26 1 -0.3634 0.4236 -0.9364 27 1 1.6054 -1.7197 1.2952 28 1 3.1263 -0.7994 1.2056 29 1 1.7046 0.1432 4.4524 30 1 1.3226 -3.7803 -3.0932 31 1 0.7284 1.4083 -1.6062 32 1 0.0832 0.0309 -4.2105 33 1 -1.0256 0.6816 -2.9627 34 1 -0.7354 2.9493 -3.7316 35 1 -0.7224 2.0388 -5.2762 36 1 1.3572 3.6535 -4.7013 37 1 1.6860 2.0288 -5.3783 38 1 2.0284 3.0311 -2.5548 39 1 2.9528 1.7784 -3.4302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827247649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:45 Heat of formation + Delta-G solvation = -147.790883 kcal Electronic energy + Delta-G solvation = -22104.846100 eV Core-core repulsion = 18818.589154 eV Total energy + Delta-G solvation = -3286.256946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.51895 -40.59781 -38.39533 -37.19458 -35.49191 -34.86746 -33.21327 -29.68245 -29.27820 -28.28727 -26.89848 -24.64387 -22.47238 -21.36445 -21.14724 -20.45540 -19.22243 -18.28227 -17.72149 -17.10266 -16.98471 -16.61171 -16.19995 -15.84528 -15.51566 -14.95178 -14.61023 -14.33961 -14.10738 -13.87820 -13.46853 -13.27489 -13.03801 -12.78866 -12.70072 -12.51981 -12.36452 -12.29562 -12.06691 -12.04079 -11.99416 -11.81195 -11.68596 -11.46426 -11.33359 -11.16339 -10.65163 -9.86841 -8.99193 -8.09034 -5.88727 1.21415 1.39947 1.46556 1.50304 2.08523 2.35208 2.51242 3.24978 3.31507 3.67987 3.90674 3.94946 4.01881 4.11584 4.31441 4.43747 4.54678 4.64261 4.66279 4.71488 4.75912 4.85457 4.88897 4.96675 4.99721 5.08919 5.16275 5.20969 5.27295 5.33875 5.49236 5.57683 5.63269 5.65535 5.72872 6.31547 7.04696 7.13883 7.28414 7.80647 8.43345 8.96055 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.007889 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.826855 B = 3548.316967 C = 4838.596733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.097 0.903 4 C -0.090 4.090 5 C 0.496 3.504 6 O -0.535 6.535 7 O -0.511 6.511 8 C 0.467 3.533 9 O -0.584 6.584 10 N -0.455 5.455 11 C -0.342 4.342 12 H 0.076 0.924 13 C 0.026 3.974 14 N -0.862 5.862 15 Si 0.954 3.046 16 H -0.283 1.283 17 H -0.292 1.292 18 H -0.262 1.262 19 C 0.112 3.888 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.113 4.113 23 C -0.130 4.130 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.428 0.572 30 H 0.254 0.746 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 10.195 6.035 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.115 0.885 4 C -0.128 4.128 5 C 0.340 3.660 6 O -0.425 6.425 7 O -0.325 6.325 8 C 0.256 3.744 9 O -0.466 6.466 10 N -0.175 5.175 11 C -0.470 4.470 12 H 0.094 0.906 13 C -0.181 4.181 14 N -0.498 5.498 15 Si 0.781 3.219 16 H -0.209 1.209 17 H -0.218 1.218 18 H -0.187 1.187 19 C 0.009 3.991 20 C -0.163 4.163 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.168 4.168 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.290 0.710 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.322 9.533 5.699 11.346 hybrid contribution 0.395 -0.797 -0.109 0.896 sum -1.927 8.736 5.590 10.549 Atomic orbital electron populations 1.21989 0.92715 1.01759 1.03505 1.20931 0.98118 0.99959 0.91707 0.88472 1.20992 1.04216 0.99647 0.87904 1.23198 0.74809 0.83006 0.84957 1.90653 1.38704 1.25678 1.87474 1.84519 1.74390 1.56602 1.16981 1.20549 0.82354 0.86577 0.84940 1.90483 1.46096 1.23574 1.86418 1.43536 1.47170 1.22354 1.04478 1.18971 1.35707 0.90994 1.01291 0.90635 1.25860 0.95749 0.98601 0.97861 1.69989 1.30655 1.07086 1.42035 0.85620 0.79481 0.77322 0.79518 1.20899 1.21769 1.18661 1.22224 0.91768 0.85704 0.99446 1.22579 0.96747 0.98549 0.98404 1.22428 0.96620 0.95954 0.99942 1.22246 0.95303 1.01019 0.96500 1.22459 0.98938 0.97625 0.97802 0.94088 0.89747 0.91444 0.88045 0.87505 0.70962 0.93644 0.88857 0.93273 0.92628 0.89766 0.91315 0.89714 0.93236 0.90174 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 8.36 71.98 0.60 -4.43 16 2 C -0.09 -3.23 1.53 -11.54 -0.02 -3.24 16 3 H 0.10 3.41 7.38 -2.39 -0.02 3.39 16 4 C -0.09 -3.00 4.59 29.85 0.14 -2.86 16 5 C 0.50 13.84 8.07 71.24 0.58 14.41 16 6 O -0.53 -16.58 14.73 21.95 0.32 -16.26 16 7 O -0.51 -10.76 13.42 -51.40 -0.69 -11.45 16 8 C 0.47 23.09 6.37 87.66 0.56 23.65 16 9 O -0.58 -33.89 13.59 -3.05 -0.04 -33.93 16 10 N -0.45 -22.06 2.44 -609.39 -1.49 -23.54 16 11 C -0.34 -18.44 7.38 84.04 0.62 -17.82 16 12 H 0.08 3.98 7.21 -2.91 -0.02 3.96 16 13 C 0.03 1.44 4.36 84.92 0.37 1.81 16 14 N -0.86 -51.61 11.67 21.66 0.25 -51.36 16 15 Si 0.95 45.61 29.60 68.60 2.03 47.64 16 16 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 17 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 19 C 0.11 4.28 2.32 45.72 0.11 4.39 16 20 C -0.12 -4.59 6.24 31.70 0.20 -4.39 16 21 C -0.11 -3.09 6.91 31.91 0.22 -2.87 16 22 C -0.11 -3.19 6.83 31.67 0.22 -2.97 16 23 C -0.13 -4.25 6.22 31.32 0.19 -4.06 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 2.67 6.08 -2.39 -0.01 2.66 16 26 H 0.07 2.39 4.56 -2.38 -0.01 2.38 16 27 H 0.10 3.60 8.13 -2.39 -0.02 3.58 16 28 H 0.11 3.59 8.08 -2.39 -0.02 3.57 16 29 H 0.43 4.57 9.10 -74.06 -0.67 3.89 16 30 H 0.25 14.97 8.32 -92.71 -0.77 14.20 16 31 H 0.09 3.26 4.24 -2.39 -0.01 3.25 16 32 H 0.05 2.23 7.02 -2.39 -0.02 2.22 16 33 H 0.05 1.96 7.47 -2.39 -0.02 1.94 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 1.87 6.98 -2.39 -0.02 1.85 16 Total: -1.00 -71.38 309.36 4.57 -66.82 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.40 Total: 20.47 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 3.78 Total: 1.62 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -1.23 Total: -74.90 kcal Atomic # 8 Polarization: -61.23 SS G_CDS: -0.41 Total: -61.64 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -71.38 4.57 -66.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827247649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.971 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds