Wall clock time and date at job start Mon Mar 30 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.01869 * 2 1 4 4 C 1.54266 * 110.03264 * 238.60698 * 2 1 3 5 5 C 1.54890 * 104.19872 * 217.05660 * 4 2 1 6 6 C 1.54893 * 102.74571 * 37.94273 * 5 4 2 7 7 H 1.09006 * 110.48413 * 80.86703 * 6 5 4 8 8 C 1.52998 * 110.48647 * 203.37598 * 6 5 4 9 9 C 1.50704 * 109.47280 * 291.76040 * 8 6 5 10 10 O 1.21295 * 119.99678 * 0.02562 * 9 8 6 11 11 N 1.34775 * 119.99491 * 179.97438 * 9 8 6 12 12 C 1.37104 * 119.99328 * 180.02562 * 11 9 8 13 13 H 1.07995 * 120.00433 * 16.25387 * 12 11 9 14 14 C 1.38953 * 119.99560 * 196.26249 * 12 11 9 15 15 N 1.31414 * 120.00255 * 21.12515 * 14 12 11 16 16 Si 1.86804 * 119.99614 * 201.13074 * 14 12 11 17 17 H 1.48495 * 109.47338 * 89.99590 * 16 14 12 18 18 H 1.48500 * 109.46581 * 209.99851 * 16 14 12 19 19 H 1.48495 * 109.46838 * 329.99588 * 16 14 12 20 20 C 1.46497 * 120.00706 * 359.97438 * 11 9 8 21 21 C 1.50701 * 109.46512 * 84.14306 * 20 11 9 22 22 O 1.20824 * 120.00572 * 0.02562 * 21 20 11 23 23 O 1.34242 * 119.99656 * 179.97438 * 21 20 11 24 24 C 1.54092 * 109.96977 * 121.45368 * 2 1 3 25 25 H 1.09000 * 109.47065 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47277 * 299.93629 * 1 2 3 27 27 H 1.08998 * 109.47187 * 59.93791 * 1 2 3 28 28 H 1.09002 * 110.48446 * 98.37791 * 4 2 1 29 29 H 1.08997 * 110.59908 * 335.79141 * 4 2 1 30 30 H 1.08997 * 110.75597 * 279.63314 * 5 4 2 31 31 H 1.08995 * 110.91285 * 156.32931 * 5 4 2 32 32 H 1.09005 * 109.46736 * 171.75978 * 8 6 5 33 33 H 1.09004 * 109.47119 * 51.76121 * 8 6 5 34 34 H 0.96997 * 119.99516 * 180.02562 * 15 14 12 35 35 H 1.08993 * 109.47361 * 204.14305 * 20 11 9 36 36 H 1.08998 * 109.46883 * 324.15085 * 20 11 9 37 37 H 0.96699 * 116.99618 * 180.02562 * 23 21 20 38 38 H 1.09001 * 110.15655 * 0.14107 * 24 2 1 39 39 H 1.08994 * 110.00254 * 238.64668 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0584 -0.7550 -1.2372 5 6 3.3144 -1.4995 -0.7201 6 6 2.8890 -1.9399 0.7027 7 1 2.2812 -2.8435 0.6565 8 6 4.1195 -2.1681 1.5828 9 6 4.8736 -3.3758 1.0887 10 8 4.4670 -3.9928 0.1268 11 7 6.0002 -3.7694 1.7150 12 6 6.6865 -4.8677 1.2651 13 1 6.4911 -5.2595 0.2779 14 6 7.6333 -5.4768 2.0796 15 7 7.5946 -5.2964 3.3807 16 14 8.9614 -6.5521 1.3248 17 1 10.1450 -5.7184 0.9945 18 1 9.3537 -7.6071 2.2934 19 1 8.4410 -7.1856 0.0867 20 6 6.4921 -3.0231 2.8757 21 6 5.7848 -3.5020 4.1173 22 8 4.9554 -4.3772 4.0405 23 8 6.0771 -2.9569 5.3087 24 6 2.0562 -0.7557 1.2355 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5129 0.8906 27 1 -0.3633 0.5148 -0.8894 28 1 2.3289 -0.0528 -2.0258 29 1 1.3155 -1.4658 -1.5989 30 1 4.1712 -0.8272 -0.6763 31 1 3.5366 -2.3662 -1.3425 32 1 3.8037 -2.3334 2.6130 33 1 4.7665 -1.2920 1.5372 34 1 8.2558 -5.7213 3.9491 35 1 7.5646 -3.1844 2.9835 36 1 6.2969 -1.9602 2.7336 37 1 5.5977 -3.2971 6.0765 38 1 1.2228 -1.1244 1.8334 39 1 2.6844 -0.0975 1.8355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828220577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:11 Heat of formation + Delta-G solvation = -140.010247 kcal Electronic energy + Delta-G solvation = -21633.628695 eV Core-core repulsion = 18347.709143 eV Total energy + Delta-G solvation = -3285.919553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.55986 -38.68971 -37.57883 -35.22776 -34.48109 -32.26867 -31.60673 -29.34703 -27.73080 -26.94405 -24.83880 -23.51469 -21.12060 -20.26077 -19.32813 -18.61686 -17.17001 -16.87278 -16.20805 -15.66649 -15.42645 -14.91274 -14.45210 -14.25954 -13.96939 -13.85964 -13.25369 -13.06726 -12.66387 -12.44774 -12.17968 -11.84031 -11.66308 -11.56010 -11.24449 -10.98337 -10.76683 -10.52652 -10.51233 -10.43951 -10.37828 -10.30301 -10.24706 -10.21895 -10.01059 -9.61981 -9.02692 -8.41219 -7.88348 -6.42961 -3.86782 3.15350 3.25161 3.30664 3.45472 3.68388 4.09516 4.26637 4.67052 4.85614 4.88417 4.94735 5.07703 5.44284 5.48015 5.56098 5.69590 5.70655 5.75127 5.81776 5.93005 5.98475 6.04045 6.07349 6.14309 6.20282 6.27997 6.38442 6.44509 6.47971 6.59486 6.61129 6.77854 6.89951 7.48706 7.56564 8.02561 8.39966 9.02897 9.12544 9.34292 9.89371 10.66216 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.005579 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.341013 B = 5017.680917 C = 5887.875014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.066 0.934 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.069 4.069 7 H 0.078 0.922 8 C -0.128 4.128 9 C 0.464 3.536 10 O -0.572 6.572 11 N -0.437 5.437 12 C -0.303 4.303 13 H 0.107 0.893 14 C 0.027 3.973 15 N -0.885 5.885 16 Si 0.929 3.071 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.270 1.270 20 C 0.147 3.853 21 C 0.489 3.511 22 O -0.504 6.504 23 O -0.535 6.535 24 C -0.119 4.119 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.270 0.730 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.391 0.609 38 H 0.061 0.939 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 11.306 -0.264 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.085 0.915 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.088 4.088 7 H 0.097 0.903 8 C -0.169 4.169 9 C 0.253 3.747 10 O -0.455 6.455 11 N -0.157 5.157 12 C -0.430 4.430 13 H 0.125 0.875 14 C -0.175 4.175 15 N -0.526 5.526 16 Si 0.756 3.244 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.194 1.194 20 C 0.020 3.980 21 C 0.329 3.671 22 O -0.389 6.389 23 O -0.346 6.346 24 C -0.156 4.156 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.248 0.752 38 H 0.080 0.920 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.682 10.810 -0.978 12.251 hybrid contribution 0.463 -0.922 0.708 1.251 sum -5.219 9.888 -0.270 11.184 Atomic orbital electron populations 1.21887 0.95539 1.01695 1.00992 1.21770 0.95201 0.99098 0.95433 0.91506 1.22455 0.98091 0.98663 0.96631 1.22511 0.96277 0.99901 0.96414 1.21639 0.95026 0.97702 0.94443 0.90339 1.21686 0.97194 0.97712 1.00283 1.20098 0.80818 0.87467 0.86272 1.90500 1.67085 1.58439 1.29481 1.43479 1.21733 1.26216 1.24293 1.19726 1.15786 1.06508 1.00965 0.87499 1.25215 0.99741 0.97890 0.94640 1.69797 1.34895 1.45105 1.02760 0.85875 0.80522 0.79116 0.78924 1.20336 1.21161 1.19409 1.20666 1.01707 0.93543 0.82092 1.23909 0.79624 0.79378 0.84192 1.90613 1.33471 1.28599 1.86257 1.84533 1.66801 1.64801 1.18484 1.22370 0.99232 0.97029 0.96989 0.92598 0.93074 0.93122 0.92344 0.91805 0.92279 0.90167 0.90713 0.90547 0.91982 0.85410 0.90579 0.75243 0.92002 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.84 37.16 0.33 -1.15 16 2 C -0.10 -1.13 3.51 -89.39 -0.31 -1.45 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -1.55 6.36 -25.07 -0.16 -1.71 16 5 C -0.11 -1.81 5.69 -24.74 -0.14 -1.95 16 6 C -0.07 -1.15 2.45 -88.96 -0.22 -1.37 16 7 H 0.08 1.48 7.96 -51.93 -0.41 1.07 16 8 C -0.13 -2.38 3.66 -27.88 -0.10 -2.48 16 9 C 0.46 11.18 7.22 -10.98 -0.08 11.10 16 10 O -0.57 -15.46 14.24 5.54 0.08 -15.38 16 11 N -0.44 -10.99 2.18 -116.10 -0.25 -11.25 16 12 C -0.30 -8.33 9.35 -14.93 -0.14 -8.47 16 13 H 0.11 3.10 7.36 -52.49 -0.39 2.71 16 14 C 0.03 0.71 4.89 -17.47 -0.09 0.62 16 15 N -0.89 -23.35 9.26 55.50 0.51 -22.84 16 16 Si 0.93 20.63 29.60 -169.99 -5.03 15.60 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C 0.15 3.18 4.97 -5.19 -0.03 3.15 16 21 C 0.49 10.83 5.87 36.01 0.21 11.04 16 22 O -0.50 -13.17 16.81 -18.75 -0.32 -13.49 16 23 O -0.54 -9.58 13.42 -39.29 -0.53 -10.11 16 24 C -0.12 -1.57 6.04 -25.50 -0.15 -1.72 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.82 7.86 -51.93 -0.41 0.41 16 30 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 31 H 0.08 1.48 7.16 -51.93 -0.37 1.11 16 32 H 0.07 1.39 7.52 -51.93 -0.39 1.00 16 33 H 0.08 1.22 7.33 -51.93 -0.38 0.84 16 34 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.13 2.89 6.34 -51.93 -0.33 2.56 16 36 H 0.08 1.33 6.68 -51.93 -0.35 0.98 16 37 H 0.39 5.38 9.10 45.56 0.41 5.80 16 38 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 39 H 0.06 0.76 7.84 -51.93 -0.41 0.35 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -32.49 315.54 -6.74 -39.23 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.08 Total: 7.86 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -0.88 Total: 5.62 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.26 Total: -34.09 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.76 Total: -38.98 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.49 -6.74 -39.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828220577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.780 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds