Wall clock time and date at job start Mon Mar 30 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.01869 * 2 1 4 4 C 1.54266 * 110.03264 * 238.60698 * 2 1 3 5 5 C 1.54890 * 104.19872 * 217.05660 * 4 2 1 6 6 C 1.54893 * 102.74571 * 37.94273 * 5 4 2 7 7 H 1.09006 * 110.48413 * 80.86703 * 6 5 4 8 8 C 1.52998 * 110.48647 * 203.37598 * 6 5 4 9 9 C 1.50704 * 109.47280 * 291.76040 * 8 6 5 10 10 O 1.21295 * 119.99678 * 0.02562 * 9 8 6 11 11 N 1.34775 * 119.99491 * 179.97438 * 9 8 6 12 12 C 1.37104 * 119.99328 * 180.02562 * 11 9 8 13 13 H 1.07995 * 120.00433 * 16.25387 * 12 11 9 14 14 C 1.38953 * 119.99560 * 196.26249 * 12 11 9 15 15 N 1.31414 * 120.00255 * 21.12515 * 14 12 11 16 16 Si 1.86804 * 119.99614 * 201.13074 * 14 12 11 17 17 H 1.48495 * 109.47338 * 89.99590 * 16 14 12 18 18 H 1.48500 * 109.46581 * 209.99851 * 16 14 12 19 19 H 1.48495 * 109.46838 * 329.99588 * 16 14 12 20 20 C 1.46497 * 120.00706 * 359.97438 * 11 9 8 21 21 C 1.50701 * 109.46512 * 84.14306 * 20 11 9 22 22 O 1.20824 * 120.00572 * 0.02562 * 21 20 11 23 23 O 1.34242 * 119.99656 * 179.97438 * 21 20 11 24 24 C 1.54092 * 109.96977 * 121.45368 * 2 1 3 25 25 H 1.09000 * 109.47065 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47277 * 299.93629 * 1 2 3 27 27 H 1.08998 * 109.47187 * 59.93791 * 1 2 3 28 28 H 1.09002 * 110.48446 * 98.37791 * 4 2 1 29 29 H 1.08997 * 110.59908 * 335.79141 * 4 2 1 30 30 H 1.08997 * 110.75597 * 279.63314 * 5 4 2 31 31 H 1.08995 * 110.91285 * 156.32931 * 5 4 2 32 32 H 1.09005 * 109.46736 * 171.75978 * 8 6 5 33 33 H 1.09004 * 109.47119 * 51.76121 * 8 6 5 34 34 H 0.96997 * 119.99516 * 180.02562 * 15 14 12 35 35 H 1.08993 * 109.47361 * 204.14305 * 20 11 9 36 36 H 1.08998 * 109.46883 * 324.15085 * 20 11 9 37 37 H 0.96699 * 116.99618 * 180.02562 * 23 21 20 38 38 H 1.09001 * 110.15655 * 0.14107 * 24 2 1 39 39 H 1.08994 * 110.00254 * 238.64668 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0584 -0.7550 -1.2372 5 6 3.3144 -1.4995 -0.7201 6 6 2.8890 -1.9399 0.7027 7 1 2.2812 -2.8435 0.6565 8 6 4.1195 -2.1681 1.5828 9 6 4.8736 -3.3758 1.0887 10 8 4.4670 -3.9928 0.1268 11 7 6.0002 -3.7694 1.7150 12 6 6.6865 -4.8677 1.2651 13 1 6.4911 -5.2595 0.2779 14 6 7.6333 -5.4768 2.0796 15 7 7.5946 -5.2964 3.3807 16 14 8.9614 -6.5521 1.3248 17 1 10.1450 -5.7184 0.9945 18 1 9.3537 -7.6071 2.2934 19 1 8.4410 -7.1856 0.0867 20 6 6.4921 -3.0231 2.8757 21 6 5.7848 -3.5020 4.1173 22 8 4.9554 -4.3772 4.0405 23 8 6.0771 -2.9569 5.3087 24 6 2.0562 -0.7557 1.2355 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5129 0.8906 27 1 -0.3633 0.5148 -0.8894 28 1 2.3289 -0.0528 -2.0258 29 1 1.3155 -1.4658 -1.5989 30 1 4.1712 -0.8272 -0.6763 31 1 3.5366 -2.3662 -1.3425 32 1 3.8037 -2.3334 2.6130 33 1 4.7665 -1.2920 1.5372 34 1 8.2558 -5.7213 3.9491 35 1 7.5646 -3.1844 2.9835 36 1 6.2969 -1.9602 2.7336 37 1 5.5977 -3.2971 6.0765 38 1 1.2228 -1.1244 1.8334 39 1 2.6844 -0.0975 1.8355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828220577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:11 Heat of formation + Delta-G solvation = -160.632538 kcal Electronic energy + Delta-G solvation = -21634.522945 eV Core-core repulsion = 18347.709143 eV Total energy + Delta-G solvation = -3286.813802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29584 -40.23176 -39.01725 -36.97377 -36.33210 -33.90386 -33.21126 -30.52176 -29.50437 -28.30546 -26.45776 -24.84223 -22.82242 -21.61054 -20.56374 -20.11095 -19.00059 -18.67220 -17.97923 -17.38130 -16.88477 -16.27034 -16.17205 -15.89091 -15.67385 -15.40964 -14.38555 -14.24008 -14.13162 -13.81526 -13.57651 -13.53568 -13.36681 -13.13060 -12.71566 -12.62228 -12.32564 -12.18549 -12.12033 -11.86693 -11.63261 -11.53718 -11.52864 -11.43276 -11.39250 -11.16885 -10.94283 -10.31833 -9.83982 -8.42748 -5.93849 1.36938 1.41976 1.53897 1.71078 1.91652 2.26957 2.55699 2.96988 3.13715 3.67865 3.74422 3.85971 4.09388 4.21455 4.30258 4.41391 4.60871 4.63159 4.66764 4.75045 4.78144 4.80936 4.84821 4.95783 4.99174 5.11378 5.15361 5.20484 5.29912 5.38828 5.45230 5.47244 5.59644 5.67211 5.95813 6.04536 6.42056 7.13769 7.32966 7.47627 7.98418 8.64093 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.005579 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.341013 B = 5017.680917 C = 5887.875014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.087 0.913 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.072 4.072 7 H 0.043 0.957 8 C -0.116 4.116 9 C 0.450 3.550 10 O -0.616 6.616 11 N -0.451 5.451 12 C -0.339 4.339 13 H 0.076 0.924 14 C -0.002 4.002 15 N -0.895 5.895 16 Si 0.991 3.009 17 H -0.259 1.259 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.143 3.857 21 C 0.497 3.503 22 O -0.552 6.552 23 O -0.518 6.518 24 C -0.111 4.111 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.274 0.726 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.413 0.587 38 H 0.065 0.935 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 13.665 0.694 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.105 0.895 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.091 4.091 7 H 0.062 0.938 8 C -0.156 4.156 9 C 0.241 3.759 10 O -0.502 6.502 11 N -0.170 5.170 12 C -0.467 4.467 13 H 0.094 0.906 14 C -0.203 4.203 15 N -0.535 5.535 16 Si 0.815 3.185 17 H -0.183 1.183 18 H -0.206 1.206 19 H -0.205 1.205 20 C 0.017 3.983 21 C 0.339 3.661 22 O -0.441 6.441 23 O -0.330 6.330 24 C -0.149 4.149 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.272 0.728 38 H 0.084 0.916 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.378 13.210 0.037 14.263 hybrid contribution 0.385 -1.684 0.476 1.791 sum -4.993 11.526 0.513 12.572 Atomic orbital electron populations 1.21873 0.94400 1.01420 1.02279 1.21769 0.96152 0.99496 0.93578 0.89492 1.22432 0.96321 0.98693 0.97869 1.22456 0.98232 0.98954 0.95560 1.21630 0.94408 0.98026 0.95039 0.93795 1.21677 0.97663 0.96060 1.00229 1.21126 0.80605 0.88660 0.85483 1.90467 1.68149 1.60192 1.31356 1.43661 1.22068 1.25927 1.25375 1.19607 1.18003 1.08568 1.00517 0.90582 1.25928 1.00681 0.98703 0.94971 1.69877 1.35043 1.45277 1.03309 0.84967 0.78267 0.77659 0.77593 1.18348 1.20639 1.20521 1.20841 1.00907 0.95518 0.81005 1.23892 0.78541 0.78381 0.85263 1.90606 1.35604 1.30763 1.87097 1.84456 1.66471 1.63947 1.18124 1.22340 0.98988 0.95677 0.97890 0.93702 0.91802 0.91867 0.90508 0.92475 0.91374 0.94027 0.90494 0.87214 0.91653 0.86328 0.86022 0.72757 0.91648 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.84 71.98 0.64 -1.90 16 2 C -0.09 -1.88 3.51 -10.00 -0.04 -1.91 16 3 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.12 -2.81 6.36 31.67 0.20 -2.61 16 5 C -0.11 -3.65 5.69 31.89 0.18 -3.46 16 6 C -0.07 -2.39 2.45 -9.72 -0.02 -2.42 16 7 H 0.04 1.74 7.96 -2.38 -0.02 1.72 16 8 C -0.12 -4.22 3.66 29.85 0.11 -4.11 16 9 C 0.45 22.30 7.22 87.66 0.63 22.94 16 10 O -0.62 -35.25 14.24 -3.07 -0.04 -35.30 16 11 N -0.45 -23.08 2.18 -639.61 -1.39 -24.47 16 12 C -0.34 -19.33 9.35 84.04 0.79 -18.54 16 13 H 0.08 4.69 7.36 -2.91 -0.02 4.66 16 14 C 0.00 -0.10 4.89 84.93 0.42 0.32 16 15 N -0.90 -46.98 9.26 21.66 0.20 -46.78 16 16 Si 0.99 42.58 29.60 68.60 2.03 44.61 16 17 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 18 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 C 0.14 6.05 4.97 85.63 0.43 6.47 16 21 C 0.50 21.44 5.87 71.24 0.42 21.85 16 22 O -0.55 -28.88 16.81 21.97 0.37 -28.51 16 23 O -0.52 -17.22 13.42 -51.53 -0.69 -17.91 16 24 C -0.11 -2.68 6.04 31.39 0.19 -2.49 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.45 7.86 -2.39 -0.02 1.43 16 30 H 0.07 2.01 8.00 -2.39 -0.02 1.99 16 31 H 0.04 1.62 7.16 -2.39 -0.02 1.61 16 32 H 0.08 2.77 7.52 -2.38 -0.02 2.76 16 33 H 0.11 3.21 7.33 -2.38 -0.02 3.19 16 34 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 35 H 0.12 5.25 6.34 -2.39 -0.02 5.24 16 36 H 0.12 3.92 6.68 -2.39 -0.02 3.91 16 37 H 0.41 10.25 9.10 -74.06 -0.67 9.58 16 38 H 0.06 1.53 7.68 -2.39 -0.02 1.51 16 39 H 0.08 1.66 7.84 -2.39 -0.02 1.64 16 Total: -1.00 -73.52 315.54 4.79 -68.73 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.38 Total: 25.49 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 3.94 Total: 14.13 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -1.19 Total: -71.25 kcal Atomic # 8 Polarization: -81.35 SS G_CDS: -0.37 Total: -81.72 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -73.52 4.79 -68.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828220577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.901 kcal (2) G-P(sol) polarization free energy of solvation -73.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds