Wall clock time and date at job start Mon Mar 30 2020 01:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 110.53892 * 2 1 4 4 C 1.54268 * 110.48749 * 122.61518 * 2 1 3 5 5 C 1.53875 * 106.59810 * 142.28446 * 4 2 1 6 6 C 1.54269 * 106.59808 * 0.02562 * 5 4 2 7 7 H 1.08994 * 110.48892 * 95.19928 * 6 5 4 8 8 C 1.53000 * 110.48315 * 217.70892 * 6 5 4 9 9 C 1.50702 * 109.47249 * 293.54405 * 8 6 5 10 10 O 1.21290 * 119.99678 * 0.02562 * 9 8 6 11 11 N 1.34776 * 120.00158 * 180.02562 * 9 8 6 12 12 C 1.37095 * 119.99730 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00639 * 337.38756 * 12 11 9 14 14 C 1.38951 * 119.99944 * 157.39042 * 12 11 9 15 15 N 1.31413 * 120.00103 * 349.77671 * 14 12 11 16 16 Si 1.86801 * 120.00149 * 169.77462 * 14 12 11 17 17 H 1.48505 * 109.47035 * 90.00172 * 16 14 12 18 18 H 1.48498 * 109.47345 * 210.00091 * 16 14 12 19 19 H 1.48503 * 109.47152 * 330.00015 * 16 14 12 20 20 C 1.46496 * 120.00044 * 0.02562 * 11 9 8 21 21 C 1.50703 * 109.46708 * 277.87304 * 20 11 9 22 22 O 1.20825 * 120.00550 * 359.97438 * 21 20 11 23 23 O 1.34230 * 119.99811 * 180.27635 * 21 20 11 24 24 C 1.54888 * 104.19461 * 336.38225 * 6 5 4 25 25 H 1.08999 * 109.46985 * 298.83181 * 1 2 3 26 26 H 1.08994 * 109.47048 * 58.84071 * 1 2 3 27 27 H 1.09002 * 109.47076 * 178.84277 * 1 2 3 28 28 H 1.09002 * 110.02805 * 23.00649 * 4 2 1 29 29 H 1.08994 * 110.02999 * 261.57301 * 4 2 1 30 30 H 1.08994 * 110.03405 * 240.71532 * 5 4 2 31 31 H 1.09001 * 110.07056 * 119.30431 * 5 4 2 32 32 H 1.08999 * 109.46905 * 173.54526 * 8 6 5 33 33 H 1.09002 * 109.47318 * 53.54464 * 8 6 5 34 34 H 0.96994 * 120.00152 * 179.97438 * 15 14 12 35 35 H 1.08991 * 109.47220 * 157.87804 * 20 11 9 36 36 H 1.08996 * 109.47362 * 37.86742 * 20 11 9 37 37 H 0.96704 * 117.00314 * 179.72227 * 23 21 20 38 38 H 1.09003 * 110.75528 * 156.26305 * 24 6 5 39 39 H 1.08997 * 110.75980 * 279.62916 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0206 0.0000 4 6 2.0700 -0.7789 1.2172 5 6 3.3166 -1.5406 0.7339 6 6 3.4910 -1.1975 -0.7600 7 1 4.1920 -0.3719 -0.8825 8 6 3.9695 -2.4244 -1.5388 9 6 5.3616 -2.7910 -1.0930 10 8 5.9162 -2.1357 -0.2362 11 7 5.9902 -3.8471 -1.6462 12 6 7.2568 -4.1802 -1.2410 13 1 7.8889 -3.4367 -0.7782 14 6 7.7274 -5.4745 -1.4256 15 7 6.9025 -6.4265 -1.7996 16 14 9.5329 -5.8611 -1.1422 17 1 9.7384 -6.2543 0.2751 18 1 9.9454 -6.9774 -2.0303 19 1 10.3502 -4.6590 -1.4459 20 6 5.3205 -4.6382 -2.6815 21 6 4.3951 -5.6347 -2.0320 22 8 4.3047 -5.6798 -0.8279 23 8 3.6759 -6.4764 -2.7909 24 6 2.0725 -0.7813 -1.2222 25 1 -0.3633 0.4956 0.9003 26 1 -0.3633 0.5317 -0.8794 27 1 -0.3633 -1.0275 -0.0208 28 1 1.3176 -1.4824 1.5739 29 1 2.3412 -0.0859 2.0135 30 1 3.1692 -2.6136 0.8562 31 1 4.1932 -1.2179 1.2956 32 1 3.9773 -2.1976 -2.6049 33 1 3.2956 -3.2601 -1.3501 34 1 7.2311 -7.3299 -1.9288 35 1 6.0667 -5.1677 -3.2737 36 1 4.7451 -3.9767 -3.3290 37 1 3.0993 -7.1005 -2.3290 38 1 2.1258 -0.1372 -2.1000 39 1 1.4584 -1.6592 -1.4228 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828220581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:15 Heat of formation + Delta-G solvation = -140.952621 kcal Electronic energy + Delta-G solvation = -21743.824282 eV Core-core repulsion = 18457.863865 eV Total energy + Delta-G solvation = -3285.960417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.55546 -38.65348 -37.54967 -35.21467 -34.47032 -32.26980 -31.58656 -29.29600 -27.71754 -26.98946 -24.81008 -23.45219 -21.10741 -19.94380 -19.74154 -18.35929 -17.17143 -16.84260 -16.14340 -15.91942 -15.56334 -14.57341 -14.44788 -14.29760 -13.93630 -13.74448 -13.27143 -13.12125 -12.79777 -12.31454 -12.11633 -11.80858 -11.64515 -11.46068 -11.27541 -10.95619 -10.71148 -10.57849 -10.49424 -10.44757 -10.38228 -10.37635 -10.28422 -10.08711 -9.93991 -9.60452 -9.03228 -8.40851 -7.83130 -6.39079 -3.92643 3.16912 3.25134 3.30007 3.46465 3.71832 4.11388 4.27459 4.68196 4.84607 4.89158 5.00303 5.11661 5.43455 5.53528 5.59669 5.68468 5.74893 5.81329 5.82517 5.91683 5.97905 6.05692 6.08878 6.15357 6.27270 6.29417 6.39289 6.48527 6.52514 6.62780 6.68870 6.88396 6.92016 7.49815 7.55118 8.06075 8.41238 9.04223 9.13382 9.34135 9.89813 10.69366 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025466 B = 0.005651 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.245586 B = 4953.831726 C = 5626.557466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.121 4.121 5 C -0.111 4.111 6 C -0.068 4.068 7 H 0.078 0.922 8 C -0.130 4.130 9 C 0.468 3.532 10 O -0.571 6.571 11 N -0.439 5.439 12 C -0.298 4.298 13 H 0.103 0.897 14 C 0.027 3.973 15 N -0.895 5.895 16 Si 0.933 3.067 17 H -0.279 1.279 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.148 3.852 21 C 0.490 3.510 22 O -0.508 6.508 23 O -0.535 6.535 24 C -0.117 4.117 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.270 0.730 35 H 0.133 0.867 36 H 0.073 0.927 37 H 0.391 0.609 38 H 0.062 0.938 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.248 5.659 -3.244 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.159 4.159 5 C -0.149 4.149 6 C -0.087 4.087 7 H 0.096 0.904 8 C -0.170 4.170 9 C 0.257 3.743 10 O -0.454 6.454 11 N -0.160 5.160 12 C -0.425 4.425 13 H 0.121 0.879 14 C -0.174 4.174 15 N -0.536 5.536 16 Si 0.760 3.240 17 H -0.205 1.205 18 H -0.209 1.209 19 H -0.194 1.194 20 C 0.021 3.979 21 C 0.331 3.669 22 O -0.393 6.393 23 O -0.346 6.346 24 C -0.155 4.155 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.081 0.919 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.677 6.063 -2.704 11.735 hybrid contribution 0.426 -1.171 0.454 1.326 sum -9.251 4.891 -2.250 10.704 Atomic orbital electron populations 1.21802 0.95493 1.01602 1.01081 1.21944 0.94894 0.99215 0.95556 0.91092 1.22258 0.97809 0.98621 0.97172 1.22094 0.97122 0.99977 0.95696 1.21633 0.95293 0.96934 0.94856 0.90404 1.21709 0.96190 0.98775 1.00335 1.20166 0.87006 0.83766 0.83390 1.90506 1.67605 1.54100 1.33157 1.43391 1.14243 1.24691 1.33650 1.19685 0.88389 0.95768 1.38678 0.87888 1.25277 1.00256 0.94734 0.97112 1.69647 1.34515 1.01778 1.47700 0.85811 0.81834 0.78045 0.78278 1.20457 1.20890 1.19440 1.20658 0.95037 0.91390 0.90767 1.23919 0.76628 0.80064 0.86289 1.90608 1.62961 1.69445 1.16323 1.84534 1.56243 1.48253 1.45529 1.22659 0.96335 0.99441 0.97025 0.93062 0.92997 0.92723 0.92310 0.92452 0.92152 0.90973 0.90621 0.90497 0.91965 0.84938 0.90962 0.75311 0.91939 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.11 37.16 0.34 -1.11 16 2 C -0.10 -1.19 3.46 -88.97 -0.31 -1.50 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.12 -1.67 6.37 -25.61 -0.16 -1.83 16 5 C -0.11 -1.96 5.39 -25.61 -0.14 -2.09 16 6 C -0.07 -1.14 2.48 -88.96 -0.22 -1.37 16 7 H 0.08 1.38 8.02 -51.93 -0.42 0.96 16 8 C -0.13 -2.42 3.71 -27.88 -0.10 -2.52 16 9 C 0.47 11.32 7.11 -10.98 -0.08 11.24 16 10 O -0.57 -15.50 14.48 5.55 0.08 -15.42 16 11 N -0.44 -11.09 2.20 -116.10 -0.26 -11.34 16 12 C -0.30 -8.20 9.29 -14.93 -0.14 -8.34 16 13 H 0.10 2.96 7.40 -52.49 -0.39 2.57 16 14 C 0.03 0.72 5.10 -17.47 -0.09 0.63 16 15 N -0.90 -23.60 9.00 55.50 0.50 -23.10 16 16 Si 0.93 20.86 29.56 -169.99 -5.03 15.83 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C 0.15 3.23 4.95 -5.19 -0.03 3.20 16 21 C 0.49 10.86 5.70 36.01 0.21 11.07 16 22 O -0.51 -13.19 16.63 -18.75 -0.31 -13.50 16 23 O -0.53 -9.60 13.42 -39.26 -0.53 -10.13 16 24 C -0.12 -1.54 5.75 -24.75 -0.14 -1.68 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.77 7.84 -51.93 -0.41 0.37 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.17 7.77 -51.93 -0.40 0.77 16 31 H 0.07 1.41 7.60 -51.93 -0.39 1.02 16 32 H 0.08 1.21 7.43 -51.93 -0.39 0.83 16 33 H 0.08 1.45 7.17 -51.93 -0.37 1.08 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 35 H 0.13 3.03 6.32 -51.93 -0.33 2.70 16 36 H 0.07 1.28 6.78 -51.93 -0.35 0.93 16 37 H 0.39 5.39 9.10 45.56 0.41 5.81 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 LS Contribution 315.62 15.07 4.76 4.76 Total: -1.00 -32.43 315.62 -6.77 -39.20 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.12 Total: 8.01 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -0.86 Total: 5.70 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.24 Total: -34.45 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.76 Total: -39.05 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.43 -6.77 -39.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828220581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.752 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds