Wall clock time and date at job start Mon Mar 30 2020 01:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 110.53892 * 2 1 4 4 C 1.54268 * 110.48749 * 122.61518 * 2 1 3 5 5 C 1.53875 * 106.59810 * 142.28446 * 4 2 1 6 6 C 1.54269 * 106.59808 * 0.02562 * 5 4 2 7 7 H 1.08994 * 110.48892 * 95.19928 * 6 5 4 8 8 C 1.53000 * 110.48315 * 217.70892 * 6 5 4 9 9 C 1.50702 * 109.47249 * 293.54405 * 8 6 5 10 10 O 1.21290 * 119.99678 * 0.02562 * 9 8 6 11 11 N 1.34776 * 120.00158 * 180.02562 * 9 8 6 12 12 C 1.37095 * 119.99730 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00639 * 337.38756 * 12 11 9 14 14 C 1.38951 * 119.99944 * 157.39042 * 12 11 9 15 15 N 1.31413 * 120.00103 * 349.77671 * 14 12 11 16 16 Si 1.86801 * 120.00149 * 169.77462 * 14 12 11 17 17 H 1.48505 * 109.47035 * 90.00172 * 16 14 12 18 18 H 1.48498 * 109.47345 * 210.00091 * 16 14 12 19 19 H 1.48503 * 109.47152 * 330.00015 * 16 14 12 20 20 C 1.46496 * 120.00044 * 0.02562 * 11 9 8 21 21 C 1.50703 * 109.46708 * 277.87304 * 20 11 9 22 22 O 1.20825 * 120.00550 * 359.97438 * 21 20 11 23 23 O 1.34230 * 119.99811 * 180.27635 * 21 20 11 24 24 C 1.54888 * 104.19461 * 336.38225 * 6 5 4 25 25 H 1.08999 * 109.46985 * 298.83181 * 1 2 3 26 26 H 1.08994 * 109.47048 * 58.84071 * 1 2 3 27 27 H 1.09002 * 109.47076 * 178.84277 * 1 2 3 28 28 H 1.09002 * 110.02805 * 23.00649 * 4 2 1 29 29 H 1.08994 * 110.02999 * 261.57301 * 4 2 1 30 30 H 1.08994 * 110.03405 * 240.71532 * 5 4 2 31 31 H 1.09001 * 110.07056 * 119.30431 * 5 4 2 32 32 H 1.08999 * 109.46905 * 173.54526 * 8 6 5 33 33 H 1.09002 * 109.47318 * 53.54464 * 8 6 5 34 34 H 0.96994 * 120.00152 * 179.97438 * 15 14 12 35 35 H 1.08991 * 109.47220 * 157.87804 * 20 11 9 36 36 H 1.08996 * 109.47362 * 37.86742 * 20 11 9 37 37 H 0.96704 * 117.00314 * 179.72227 * 23 21 20 38 38 H 1.09003 * 110.75528 * 156.26305 * 24 6 5 39 39 H 1.08997 * 110.75980 * 279.62916 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0206 0.0000 4 6 2.0700 -0.7789 1.2172 5 6 3.3166 -1.5406 0.7339 6 6 3.4910 -1.1975 -0.7600 7 1 4.1920 -0.3719 -0.8825 8 6 3.9695 -2.4244 -1.5388 9 6 5.3616 -2.7910 -1.0930 10 8 5.9162 -2.1357 -0.2362 11 7 5.9902 -3.8471 -1.6462 12 6 7.2568 -4.1802 -1.2410 13 1 7.8889 -3.4367 -0.7782 14 6 7.7274 -5.4745 -1.4256 15 7 6.9025 -6.4265 -1.7996 16 14 9.5329 -5.8611 -1.1422 17 1 9.7384 -6.2543 0.2751 18 1 9.9454 -6.9774 -2.0303 19 1 10.3502 -4.6590 -1.4459 20 6 5.3205 -4.6382 -2.6815 21 6 4.3951 -5.6347 -2.0320 22 8 4.3047 -5.6798 -0.8279 23 8 3.6759 -6.4764 -2.7909 24 6 2.0725 -0.7813 -1.2222 25 1 -0.3633 0.4956 0.9003 26 1 -0.3633 0.5317 -0.8794 27 1 -0.3633 -1.0275 -0.0208 28 1 1.3176 -1.4824 1.5739 29 1 2.3412 -0.0859 2.0135 30 1 3.1692 -2.6136 0.8562 31 1 4.1932 -1.2179 1.2956 32 1 3.9773 -2.1976 -2.6049 33 1 3.2956 -3.2601 -1.3501 34 1 7.2311 -7.3299 -1.9288 35 1 6.0667 -5.1677 -3.2737 36 1 4.7451 -3.9767 -3.3290 37 1 3.0993 -7.1005 -2.3290 38 1 2.1258 -0.1372 -2.1000 39 1 1.4584 -1.6592 -1.4228 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828220581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:15 Heat of formation + Delta-G solvation = -161.545108 kcal Electronic energy + Delta-G solvation = -21744.717239 eV Core-core repulsion = 18457.863865 eV Total energy + Delta-G solvation = -3286.853374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30201 -40.22225 -39.01442 -36.96890 -36.32564 -33.88757 -33.22563 -30.54494 -29.49835 -28.34833 -26.46321 -24.81658 -22.81689 -21.43244 -20.88809 -19.92399 -19.01280 -18.64282 -17.94977 -17.48800 -16.95611 -16.37638 -16.20473 -15.92999 -15.52132 -15.11296 -14.74257 -14.27358 -14.03785 -13.80536 -13.69058 -13.47549 -13.26754 -12.94925 -12.77231 -12.66587 -12.43430 -12.15754 -12.11141 -11.89702 -11.68517 -11.54875 -11.47800 -11.45332 -11.39072 -11.23835 -10.96490 -10.32009 -9.79600 -8.39354 -6.00063 1.36539 1.40536 1.53130 1.71417 1.94047 2.26792 2.56731 3.00902 3.12667 3.68230 3.71192 3.81399 4.08536 4.24451 4.33557 4.42404 4.49074 4.62197 4.70919 4.77734 4.80153 4.84969 4.85633 4.88454 4.99567 5.08709 5.17721 5.19588 5.24683 5.40573 5.43201 5.47424 5.55805 5.64684 5.96340 6.07208 6.43166 7.13666 7.32840 7.47996 7.97686 8.66251 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025466 B = 0.005651 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.245586 B = 4953.831726 C = 5626.557466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.070 4.070 7 H 0.065 0.935 8 C -0.118 4.118 9 C 0.454 3.546 10 O -0.615 6.615 11 N -0.453 5.453 12 C -0.333 4.333 13 H 0.076 0.924 14 C -0.004 4.004 15 N -0.903 5.903 16 Si 0.993 3.007 17 H -0.287 1.287 18 H -0.266 1.266 19 H -0.267 1.267 20 C 0.144 3.856 21 C 0.499 3.501 22 O -0.554 6.554 23 O -0.518 6.518 24 C -0.106 4.106 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.273 0.727 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.413 0.587 38 H 0.085 0.915 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.968 5.835 -4.884 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.089 4.089 7 H 0.083 0.917 8 C -0.158 4.158 9 C 0.244 3.756 10 O -0.500 6.500 11 N -0.173 5.173 12 C -0.461 4.461 13 H 0.094 0.906 14 C -0.204 4.204 15 N -0.544 5.544 16 Si 0.817 3.183 17 H -0.214 1.214 18 H -0.190 1.190 19 H -0.191 1.191 20 C 0.019 3.981 21 C 0.341 3.659 22 O -0.443 6.443 23 O -0.330 6.330 24 C -0.144 4.144 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.272 0.728 38 H 0.103 0.897 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.437 6.206 -4.395 13.735 hybrid contribution 0.954 -1.295 0.970 1.878 sum -10.483 4.912 -3.425 12.073 Atomic orbital electron populations 1.21764 0.93452 1.01987 1.02334 1.21948 0.96497 0.98972 0.93776 0.90395 1.22232 0.96052 0.98704 0.98374 1.22041 0.97728 0.98604 0.96652 1.21660 0.97590 0.95656 0.93996 0.91696 1.21692 0.92174 0.99474 1.02467 1.21184 0.88735 0.82934 0.82703 1.90469 1.69120 1.55382 1.35038 1.43588 1.13992 1.25320 1.34408 1.19620 0.89889 0.96062 1.40525 0.90610 1.25985 1.03937 0.94122 0.96352 1.69739 1.35682 1.01826 1.47127 0.84933 0.77367 0.78245 0.77718 1.21373 1.19005 1.19095 1.20820 0.95128 0.92006 0.90155 1.23882 0.76327 0.80074 0.85597 1.90603 1.64655 1.70779 1.18261 1.84457 1.55946 1.47926 1.44659 1.22627 0.93306 1.00244 0.98202 0.92188 0.91435 0.92789 0.91565 0.91858 0.94964 0.94433 0.87183 0.90485 0.91729 0.85979 0.86433 0.72818 0.89651 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.11 71.98 0.66 -1.67 16 2 C -0.09 -2.03 3.46 -9.72 -0.03 -2.06 16 3 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.12 -3.11 6.37 31.32 0.20 -2.91 16 5 C -0.11 -4.09 5.39 31.32 0.17 -3.92 16 6 C -0.07 -2.32 2.48 -9.72 -0.02 -2.34 16 7 H 0.06 2.31 8.02 -2.39 -0.02 2.29 16 8 C -0.12 -4.32 3.71 29.85 0.11 -4.21 16 9 C 0.45 22.54 7.11 87.66 0.62 23.17 16 10 O -0.61 -35.17 14.48 -3.06 -0.04 -35.21 16 11 N -0.45 -23.29 2.20 -639.62 -1.41 -24.70 16 12 C -0.33 -18.96 9.29 84.04 0.78 -18.18 16 13 H 0.08 4.61 7.40 -2.91 -0.02 4.58 16 14 C 0.00 -0.21 5.10 84.93 0.43 0.22 16 15 N -0.90 -47.46 9.00 21.66 0.20 -47.26 16 16 Si 0.99 43.12 29.56 68.60 2.03 45.14 16 17 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 20 C 0.14 6.16 4.95 85.63 0.42 6.59 16 21 C 0.50 21.57 5.70 71.24 0.41 21.97 16 22 O -0.55 -28.91 16.63 21.97 0.37 -28.54 16 23 O -0.52 -17.34 13.42 -51.42 -0.69 -18.03 16 24 C -0.11 -2.49 5.75 31.88 0.18 -2.31 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.67 7.84 -2.39 -0.02 1.65 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.03 1.31 7.77 -2.39 -0.02 1.29 16 31 H 0.04 1.57 7.60 -2.39 -0.02 1.55 16 32 H 0.11 3.22 7.43 -2.39 -0.02 3.20 16 33 H 0.08 2.84 7.17 -2.39 -0.02 2.82 16 34 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 35 H 0.12 5.49 6.32 -2.39 -0.02 5.47 16 36 H 0.12 3.85 6.78 -2.39 -0.02 3.83 16 37 H 0.41 10.32 9.10 -74.05 -0.67 9.64 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.64 7.97 -2.39 -0.02 1.62 16 Total: -1.00 -73.38 315.62 4.75 -68.62 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.38 Total: 25.63 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 3.93 Total: 14.36 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -1.21 Total: -71.97 kcal Atomic # 8 Polarization: -81.42 SS G_CDS: -0.37 Total: -81.79 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -73.38 4.75 -68.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828220581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.920 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds