Wall clock time and date at job start Mon Mar 30 2020 01:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.47152 * 300.00247 * 15 13 12 17 17 C 1.53007 * 109.46907 * 300.00210 * 16 15 13 18 18 C 1.52997 * 109.47032 * 300.00143 * 17 16 15 19 19 C 1.50704 * 109.47007 * 180.02562 * 18 17 16 20 20 O 1.20830 * 119.99872 * 239.99739 * 19 18 17 21 21 O 1.34228 * 119.99877 * 59.99834 * 19 18 17 22 22 C 1.53001 * 109.47391 * 60.00154 * 18 17 16 23 23 C 1.52998 * 109.46819 * 299.99822 * 22 18 17 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 29 29 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 30 30 H 1.08994 * 109.46940 * 59.99799 * 16 15 13 31 31 H 1.08995 * 109.47352 * 180.02562 * 16 15 13 32 32 H 1.08999 * 109.46635 * 180.02562 * 17 16 15 33 33 H 1.08995 * 109.47254 * 60.00133 * 17 16 15 34 34 H 1.09005 * 109.47400 * 299.99628 * 18 17 16 35 35 H 0.96700 * 116.99491 * 179.97438 * 21 19 18 36 36 H 1.09005 * 109.46880 * 179.97438 * 22 18 17 37 37 H 1.08995 * 109.47055 * 59.99911 * 22 18 17 38 38 H 1.08995 * 109.47379 * 299.99890 * 23 22 18 39 39 H 1.09005 * 109.46971 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 4.0513 -1.2796 -3.3224 17 6 4.9958 -0.1260 -2.9786 18 6 5.0474 0.8572 -4.1497 19 6 5.9782 1.9931 -3.8113 20 8 5.5626 3.1273 -3.7849 21 8 7.2689 1.7447 -3.5393 22 6 3.6449 1.4082 -4.4151 23 6 2.7004 0.2547 -4.7589 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 2.2490 -1.6317 -1.1527 29 1 1.9760 -1.5503 -3.8327 30 1 4.0145 -1.9800 -2.4881 31 1 4.4144 -1.7931 -4.2126 32 1 5.9950 -0.5186 -2.7899 33 1 4.6329 0.3878 -2.0885 34 1 5.4104 0.3434 -5.0399 35 1 7.8273 2.5054 -3.3281 36 1 3.6818 2.1091 -5.2492 37 1 3.2820 1.9221 -3.5250 38 1 3.0634 -0.2591 -5.6490 39 1 1.7012 0.6472 -4.9476 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833515466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:18 Heat of formation + Delta-G solvation = -156.215337 kcal Electronic energy + Delta-G solvation = -21602.240688 eV Core-core repulsion = 18315.618430 eV Total energy + Delta-G solvation = -3286.622258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68073 -39.49926 -36.87318 -36.02544 -34.72369 -32.52436 -31.45251 -30.62276 -28.65608 -25.27173 -24.80055 -22.67219 -22.34292 -20.72722 -19.94841 -18.97092 -17.96108 -16.77735 -16.72402 -15.80067 -15.63109 -15.23907 -15.12539 -14.31047 -13.90921 -13.69811 -13.35744 -13.20531 -12.58856 -12.44830 -12.30419 -12.12035 -11.86062 -11.62009 -11.48640 -11.13215 -11.06264 -10.99232 -10.77535 -10.66883 -10.57157 -10.25029 -10.22755 -10.13278 -10.06038 -9.03868 -8.75920 -8.53206 -7.84619 -6.11261 -4.20699 2.26857 3.07325 3.25233 3.30781 3.31568 3.44313 4.11679 4.38643 4.63854 4.73821 4.90167 5.11937 5.16112 5.20985 5.36433 5.41819 5.49501 5.56649 5.62638 5.82814 5.94246 6.04389 6.11061 6.24838 6.30197 6.36783 6.51149 6.77359 6.85159 6.99449 7.17447 7.50999 7.58841 7.71166 7.93572 7.93934 8.17072 8.70727 8.80300 9.18753 9.47268 10.94601 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.005361 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.171081 B = 5221.299652 C = 5741.963835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.709 5.709 13 C 0.505 3.495 14 O -0.549 6.549 15 C -0.117 4.117 16 C -0.105 4.105 17 C -0.115 4.115 18 C -0.074 4.074 19 C 0.480 3.520 20 O -0.510 6.510 21 O -0.519 6.519 22 C -0.120 4.120 23 C -0.092 4.092 24 H 0.014 0.986 25 H 0.025 0.975 26 H 0.089 0.911 27 H 0.265 0.735 28 H 0.387 0.613 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.406 0.594 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.467 -4.922 -13.582 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.357 5.357 13 C 0.290 3.710 14 O -0.428 6.428 15 C -0.138 4.138 16 C -0.143 4.143 17 C -0.153 4.153 18 C -0.093 4.093 19 C 0.322 3.678 20 O -0.397 6.397 21 O -0.331 6.331 22 C -0.157 4.157 23 C -0.129 4.129 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.219 0.781 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.264 0.736 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.786 -3.964 -13.516 16.094 hybrid contribution 0.798 -0.421 1.075 1.403 sum 8.584 -4.385 -12.442 15.739 Atomic orbital electron populations 1.22071 0.98597 0.98993 1.00848 1.18703 0.90938 0.93947 0.80134 0.93478 1.21181 1.32460 1.13177 0.90390 0.92195 1.24892 0.94838 0.94947 0.99039 1.69897 1.35820 1.22406 1.23949 0.86527 0.79149 0.79601 0.81927 1.21136 1.20165 1.20216 1.46542 1.65052 1.13444 1.10633 1.20358 0.78423 0.87523 0.84745 1.90594 1.51149 1.16054 1.85001 1.21457 0.97872 0.99289 0.95189 1.21489 0.93193 0.97270 1.02330 1.21569 1.00727 0.95765 0.97228 1.21113 0.94207 0.93102 1.00888 1.23689 0.80996 0.90676 0.72421 1.90729 1.76720 1.24521 1.47738 1.84543 1.22436 1.44497 1.81641 1.21754 0.90849 0.98006 1.05140 1.21261 1.00529 0.95374 0.95777 0.96687 0.95570 0.89257 0.92538 0.78080 0.88880 0.90615 0.90924 0.90498 0.90539 0.87945 0.73579 0.91756 0.87357 0.91864 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.69 2.56 -69.09 -0.18 6.51 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.71 -14.29 4.96 -54.93 -0.27 -14.56 16 13 C 0.50 9.56 5.60 -10.98 -0.06 9.49 16 14 O -0.55 -12.62 13.32 5.56 0.07 -12.55 16 15 C -0.12 -1.55 3.01 -91.77 -0.28 -1.82 16 16 C -0.11 -1.17 5.36 -26.73 -0.14 -1.31 16 17 C -0.12 -1.48 4.92 -26.73 -0.13 -1.61 16 18 C -0.07 -0.93 2.63 -91.77 -0.24 -1.17 16 19 C 0.48 6.71 7.63 36.01 0.27 6.99 16 20 O -0.51 -8.97 16.74 -18.75 -0.31 -9.29 16 21 O -0.52 -5.64 13.33 -39.25 -0.52 -6.17 16 22 C -0.12 -1.75 4.20 -26.73 -0.11 -1.87 16 23 C -0.09 -1.16 5.09 -26.73 -0.14 -1.29 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.39 6.72 7.96 -40.82 -0.32 6.40 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 0.82 7.56 -51.93 -0.39 0.43 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.08 1.27 7.22 -51.93 -0.37 0.90 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.41 2.77 9.10 45.56 0.41 3.19 16 36 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.11 2.08 5.47 -51.93 -0.28 1.79 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 314.98 15.07 4.75 4.75 Total: -1.00 -32.85 314.98 -6.75 -39.59 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.01 Total: 9.08 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.06 Total: -2.05 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.35 Total: -38.97 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.76 Total: -28.00 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.85 -6.75 -39.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.621 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds