Wall clock time and date at job start Mon Mar 30 2020 01:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.47152 * 300.00247 * 15 13 12 17 17 C 1.53007 * 109.46907 * 300.00210 * 16 15 13 18 18 C 1.52997 * 109.47032 * 300.00143 * 17 16 15 19 19 C 1.50704 * 109.47007 * 180.02562 * 18 17 16 20 20 O 1.20830 * 119.99872 * 239.99739 * 19 18 17 21 21 O 1.34228 * 119.99877 * 59.99834 * 19 18 17 22 22 C 1.53001 * 109.47391 * 60.00154 * 18 17 16 23 23 C 1.52998 * 109.46819 * 299.99822 * 22 18 17 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 29 29 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 30 30 H 1.08994 * 109.46940 * 59.99799 * 16 15 13 31 31 H 1.08995 * 109.47352 * 180.02562 * 16 15 13 32 32 H 1.08999 * 109.46635 * 180.02562 * 17 16 15 33 33 H 1.08995 * 109.47254 * 60.00133 * 17 16 15 34 34 H 1.09005 * 109.47400 * 299.99628 * 18 17 16 35 35 H 0.96700 * 116.99491 * 179.97438 * 21 19 18 36 36 H 1.09005 * 109.46880 * 179.97438 * 22 18 17 37 37 H 1.08995 * 109.47055 * 59.99911 * 22 18 17 38 38 H 1.08995 * 109.47379 * 299.99890 * 23 22 18 39 39 H 1.09005 * 109.46971 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 4.0513 -1.2796 -3.3224 17 6 4.9958 -0.1260 -2.9786 18 6 5.0474 0.8572 -4.1497 19 6 5.9782 1.9931 -3.8113 20 8 5.5626 3.1273 -3.7849 21 8 7.2689 1.7447 -3.5393 22 6 3.6449 1.4082 -4.4151 23 6 2.7004 0.2547 -4.7589 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 2.2490 -1.6317 -1.1527 29 1 1.9760 -1.5503 -3.8327 30 1 4.0145 -1.9800 -2.4881 31 1 4.4144 -1.7931 -4.2126 32 1 5.9950 -0.5186 -2.7899 33 1 4.6329 0.3878 -2.0885 34 1 5.4104 0.3434 -5.0399 35 1 7.8273 2.5054 -3.3281 36 1 3.6818 2.1091 -5.2492 37 1 3.2820 1.9221 -3.5250 38 1 3.0634 -0.2591 -5.6490 39 1 1.7012 0.6472 -4.9476 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833515466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:18 Heat of formation + Delta-G solvation = -180.394546 kcal Electronic energy + Delta-G solvation = -21603.289177 eV Core-core repulsion = 18315.618430 eV Total energy + Delta-G solvation = -3287.670747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82975 -40.81817 -38.17412 -37.10791 -36.55848 -34.36639 -32.68903 -31.70886 -30.44817 -27.34784 -25.98928 -23.90819 -23.52773 -22.18974 -21.31248 -20.48160 -19.03136 -18.48207 -17.77482 -17.26604 -17.14047 -16.78197 -16.41050 -15.92545 -15.10010 -14.99562 -14.74290 -14.50485 -14.37656 -13.75348 -13.58972 -13.35103 -13.13262 -13.06276 -12.86909 -12.79587 -12.70020 -12.57281 -12.28645 -12.19868 -12.07444 -11.81657 -11.66492 -11.17301 -11.12141 -11.05867 -10.60700 -10.27994 -9.62500 -8.17245 -6.35065 1.18509 1.43612 1.46034 1.53775 1.96668 2.14493 2.36893 2.74667 3.13000 3.62358 3.73284 3.88055 4.03194 4.15242 4.32367 4.43239 4.50849 4.56235 4.63722 4.75365 4.89455 4.91990 4.97291 5.09115 5.11708 5.12521 5.26742 5.30898 5.38082 5.43796 5.54186 5.61380 5.68674 5.74960 5.95396 6.12464 6.74443 6.97521 7.08170 7.33887 7.70367 8.88868 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.005361 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.171081 B = 5221.299652 C = 5741.963835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.011 1.011 4 C -0.544 4.544 5 H 0.075 0.925 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.972 3.028 9 H -0.288 1.288 10 H -0.261 1.261 11 H -0.271 1.271 12 N -0.707 5.707 13 C 0.496 3.504 14 O -0.597 6.597 15 C -0.106 4.106 16 C -0.099 4.099 17 C -0.114 4.114 18 C -0.070 4.070 19 C 0.479 3.521 20 O -0.559 6.559 21 O -0.508 6.508 22 C -0.121 4.121 23 C -0.088 4.088 24 H 0.009 0.991 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.264 0.736 28 H 0.404 0.596 29 H 0.127 0.873 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.098 0.902 33 H 0.023 0.977 34 H 0.150 0.850 35 H 0.423 0.577 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.231 -8.510 -15.138 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.007 0.993 4 C -0.582 4.582 5 H 0.093 0.907 6 C -0.189 4.189 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.214 1.214 10 H -0.185 1.185 11 H -0.196 1.196 12 N -0.356 5.356 13 C 0.284 3.716 14 O -0.479 6.479 15 C -0.127 4.127 16 C -0.137 4.137 17 C -0.151 4.151 18 C -0.088 4.088 19 C 0.324 3.676 20 O -0.450 6.450 21 O -0.321 6.321 22 C -0.158 4.158 23 C -0.125 4.125 24 H 0.028 0.972 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.239 0.761 29 H 0.145 0.855 30 H 0.100 0.900 31 H 0.141 0.859 32 H 0.116 0.884 33 H 0.042 0.958 34 H 0.168 0.832 35 H 0.284 0.716 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.132 0.868 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.589 -7.602 -15.096 19.433 hybrid contribution 0.299 0.794 1.537 1.755 sum 9.888 -6.808 -13.560 18.110 Atomic orbital electron populations 1.21884 0.98586 0.99373 0.99275 1.18232 0.90895 0.91590 0.82479 0.99287 1.21540 1.32418 1.13486 0.90780 0.90658 1.25850 0.94929 0.95586 1.02494 1.70069 1.37197 1.24093 1.24559 0.85400 0.78626 0.78829 0.77508 1.21397 1.18528 1.19579 1.46276 1.65406 1.14098 1.09773 1.21572 0.76974 0.87123 0.85926 1.90598 1.52824 1.18617 1.85886 1.21545 0.99918 0.99612 0.91639 1.21580 0.90795 0.96415 1.04864 1.21562 1.02234 0.96133 0.95192 1.21185 0.92557 0.92535 1.02568 1.24120 0.81853 0.90409 0.71243 1.90719 1.77691 1.26552 1.50080 1.84493 1.21342 1.45389 1.80847 1.21630 0.92878 0.98829 1.02493 1.21314 0.99288 0.94688 0.97250 0.97172 0.93942 0.91875 0.92675 0.76104 0.85474 0.90029 0.85946 0.88373 0.95789 0.83217 0.71557 0.91792 0.93032 0.86814 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 9.26 71.98 0.67 -6.19 16 2 C 0.27 14.32 2.56 44.24 0.11 14.43 16 3 H -0.01 -0.69 7.58 -2.39 -0.02 -0.70 16 4 C -0.54 -28.93 8.73 25.60 0.22 -28.71 16 5 H 0.08 3.68 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -54.09 11.32 21.45 0.24 -53.84 16 8 Si 0.97 42.25 29.54 68.60 2.03 44.27 16 9 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 N -0.71 -28.70 4.96 -446.10 -2.21 -30.91 16 13 C 0.50 19.04 5.60 87.66 0.49 19.53 16 14 O -0.60 -29.33 13.32 -3.02 -0.04 -29.37 16 15 C -0.11 -2.50 3.01 -11.54 -0.03 -2.54 16 16 C -0.10 -1.76 5.36 30.60 0.16 -1.59 16 17 C -0.11 -2.67 4.92 30.60 0.15 -2.52 16 18 C -0.07 -1.60 2.63 -11.54 -0.03 -1.63 16 19 C 0.48 13.15 7.63 71.24 0.54 13.70 16 20 O -0.56 -20.51 16.74 21.95 0.37 -20.14 16 21 O -0.51 -10.12 13.33 -51.40 -0.68 -10.80 16 22 C -0.12 -3.49 4.20 30.59 0.13 -3.36 16 23 C -0.09 -1.99 5.09 30.59 0.16 -1.83 16 24 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 25 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 3.60 6.07 -2.39 -0.01 3.59 16 27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.40 13.45 7.96 -92.70 -0.74 12.71 16 29 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.08 1.41 7.56 -2.39 -0.02 1.39 16 31 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.88 8.11 -2.39 -0.02 1.86 16 33 H 0.02 0.80 7.22 -2.39 -0.02 0.79 16 34 H 0.15 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.42 5.21 9.10 -74.06 -0.67 4.54 16 36 H 0.06 1.79 8.10 -2.38 -0.02 1.77 16 37 H 0.05 2.12 5.47 -2.39 -0.01 2.10 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.47 8.10 -2.38 -0.02 1.45 16 Total: -1.00 -78.90 314.98 2.38 -76.52 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -0.34 Total: 23.93 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 3.02 Total: 0.34 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -1.97 Total: -84.75 kcal Atomic # 8 Polarization: -59.96 SS G_CDS: -0.36 Total: -60.32 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -78.90 2.38 -76.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.871 kcal (2) G-P(sol) polarization free energy of solvation -78.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds