Wall clock time and date at job start Mon Mar 30 2020 01:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.05672 * 2 1 4 4 C 1.54266 * 110.02912 * 121.41222 * 2 1 3 5 5 C 1.54887 * 104.19888 * 95.67501 * 4 2 1 6 6 C 1.54893 * 102.74533 * 37.94403 * 5 4 2 7 7 C 1.53872 * 110.03682 * 238.57703 * 2 1 3 8 8 C 1.53002 * 110.03132 * 0.02562 * 7 2 1 9 9 C 1.50697 * 110.03154 * 121.38231 * 7 2 1 10 10 O 1.20827 * 119.99947 * 0.02562 * 9 7 2 11 11 O 1.34230 * 120.00192 * 180.02562 * 9 7 2 12 12 C 1.45192 * 117.00508 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47430 * 179.97438 * 12 11 9 14 14 O 1.21292 * 119.99726 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99778 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99691 * 179.97438 * 15 13 12 17 17 H 1.08004 * 119.99837 * 0.02562 * 16 15 13 18 18 C 1.38951 * 120.00229 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99710 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00120 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47054 * 60.00495 * 20 18 16 22 22 H 1.48500 * 109.46883 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47341 * 300.00060 * 20 18 16 24 24 H 1.08994 * 109.47374 * 300.04281 * 1 2 3 25 25 H 1.08999 * 109.46732 * 60.04304 * 1 2 3 26 26 H 1.08998 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.09001 * 110.48620 * 214.35708 * 4 2 1 28 28 H 1.09004 * 110.48798 * 336.99542 * 4 2 1 29 29 H 1.09001 * 110.75744 * 156.25305 * 5 4 2 30 30 H 1.09000 * 110.75698 * 279.63123 * 5 4 2 31 31 H 1.09002 * 110.48578 * 203.38190 * 6 5 4 32 32 H 1.08998 * 110.60430 * 80.79077 * 6 5 4 33 33 H 1.09001 * 109.47376 * 59.99735 * 8 7 2 34 34 H 1.08998 * 109.47481 * 180.02562 * 8 7 2 35 35 H 1.09000 * 109.46992 * 299.99829 * 8 7 2 36 36 H 1.09003 * 109.47065 * 300.00292 * 12 11 9 37 37 H 1.09008 * 109.46874 * 60.00045 * 12 11 9 38 38 H 0.97001 * 120.00209 * 0.02562 * 15 13 12 39 39 H 0.96998 * 120.00344 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 2.3280 -2.1901 0.7194 6 6 2.8875 -1.9407 -0.7032 7 6 2.0572 -0.7537 -1.2336 8 6 0.8863 -1.2666 -2.0743 9 6 2.9267 0.1566 -2.0620 10 8 3.1142 1.2974 -1.7107 11 8 3.4930 -0.2998 -3.1902 12 6 4.3183 0.6321 -3.9374 13 6 4.8655 -0.0526 -5.1633 14 8 4.5868 -1.2119 -5.3856 15 7 5.6637 0.6236 -6.0131 16 6 6.1619 0.0005 -7.1280 17 1 5.9144 -1.0321 -7.3255 18 6 6.9853 0.6974 -8.0039 19 7 7.2868 1.9536 -7.7633 20 14 7.6635 -0.1514 -9.5234 21 1 6.5388 -0.6109 -10.3772 22 1 8.5072 0.8020 -10.2879 23 1 8.4832 -1.3197 -9.1134 24 1 -0.3634 0.5145 0.8895 25 1 -0.3633 0.5132 -0.8904 26 1 -0.3633 -1.0277 0.0005 27 1 2.9810 -0.2999 1.5968 28 1 1.3060 -0.7694 2.0256 29 1 3.0675 -2.6930 1.3426 30 1 1.4030 -2.7651 0.6754 31 1 2.7402 -2.8198 -1.3306 32 1 3.9443 -1.6775 -0.6591 33 1 0.2778 -0.4238 -2.4023 34 1 1.2697 -1.7989 -2.9448 35 1 0.2772 -1.9428 -1.4746 36 1 3.7168 1.4900 -4.2379 37 1 5.1442 0.9691 -3.3107 38 1 5.8863 1.5509 -5.8354 39 1 7.8619 2.4400 -8.3744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837935962.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:48 Heat of formation + Delta-G solvation = -160.235744 kcal Electronic energy + Delta-G solvation = -20907.411398 eV Core-core repulsion = 17620.614802 eV Total energy + Delta-G solvation = -3286.796596 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.15452 -40.33536 -39.37338 -37.46051 -36.05915 -33.45141 -32.62193 -32.07748 -29.99706 -27.05903 -26.43181 -26.30237 -23.30736 -21.57374 -21.42944 -20.10253 -19.71310 -18.59107 -18.03131 -17.69993 -17.49801 -16.62208 -16.26684 -15.91178 -15.78566 -15.22017 -14.83309 -14.46467 -14.15724 -14.01448 -13.80804 -13.58160 -13.53384 -13.18504 -12.94532 -12.64567 -12.59870 -12.50896 -12.13702 -11.92823 -11.85324 -11.79822 -11.62085 -11.59198 -11.41901 -11.40724 -11.17896 -10.53991 -10.14613 -8.54243 -6.05442 1.05173 1.34042 1.36227 1.44076 1.55286 1.84013 2.28402 2.98370 3.10873 3.35007 3.50115 3.63274 3.87183 4.07168 4.09138 4.17426 4.27583 4.33435 4.38814 4.42011 4.56254 4.60599 4.81459 4.85417 4.96606 5.00965 5.11908 5.14033 5.18844 5.23706 5.34192 5.35730 5.39588 5.42195 5.55467 5.86219 6.42708 6.60524 7.00060 7.36514 7.89864 8.62645 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043851 B = 0.003561 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.374296 B = 7860.419142 C = 8040.405067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.051 4.051 8 C -0.139 4.139 9 C 0.463 3.537 10 O -0.534 6.534 11 O -0.338 6.338 12 C 0.068 3.932 13 C 0.437 3.563 14 O -0.616 6.616 15 N -0.557 5.557 16 C -0.341 4.341 17 H 0.085 0.915 18 C -0.008 4.008 19 N -0.916 5.916 20 Si 0.999 3.001 21 H -0.269 1.269 22 H -0.269 1.269 23 H -0.269 1.269 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.399 0.601 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.770 -3.982 16.528 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.052 4.052 8 C -0.195 4.195 9 C 0.307 3.693 10 O -0.423 6.423 11 O -0.253 6.253 12 C -0.009 4.009 13 C 0.223 3.777 14 O -0.502 6.502 15 N -0.194 5.194 16 C -0.470 4.470 17 H 0.103 0.897 18 C -0.209 4.209 19 N -0.555 5.555 20 Si 0.822 3.178 21 H -0.194 1.194 22 H -0.193 1.193 23 H -0.194 1.194 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.234 0.766 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.757 -4.244 16.343 20.576 hybrid contribution 0.956 0.770 -0.996 1.581 sum -10.801 -3.474 15.347 19.086 Atomic orbital electron populations 1.21965 0.92501 1.03214 1.02105 1.21885 0.97716 0.99486 0.91947 0.91140 1.22450 1.01314 0.95088 0.96556 1.22500 1.02060 0.96949 0.93479 1.22493 0.98116 0.96025 0.98637 1.21441 0.94703 0.94630 0.94420 1.22033 0.96000 1.02050 0.99459 1.24669 0.77846 0.87867 0.78914 1.90586 1.60259 1.21076 1.70409 1.86578 1.59185 1.43961 1.35592 1.22516 0.95470 0.91242 0.91683 1.20039 0.83918 0.87571 0.86126 1.90518 1.63641 1.18864 1.77209 1.41739 1.42512 1.14071 1.21109 1.19712 1.28453 0.98163 1.00632 0.89680 1.26153 0.96464 0.96239 1.02045 1.69667 1.36696 1.09750 1.39434 0.84898 0.78291 0.77898 0.76726 1.19410 1.19322 1.19408 0.91301 0.93057 0.90303 0.92363 0.88864 0.90044 0.89052 0.89802 0.92884 0.91779 0.92827 0.87653 0.87938 0.88028 0.76630 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 7.87 71.98 0.57 -1.50 16 2 C -0.09 -1.84 3.10 -10.07 -0.03 -1.87 16 3 H 0.07 1.79 6.40 -2.38 -0.02 1.78 16 4 C -0.12 -1.81 6.37 31.67 0.20 -1.61 16 5 C -0.11 -1.63 6.91 31.89 0.22 -1.41 16 6 C -0.12 -2.49 5.88 31.67 0.19 -2.30 16 7 C -0.05 -1.23 0.88 -52.20 -0.05 -1.27 16 8 C -0.14 -2.89 7.11 71.98 0.51 -2.38 16 9 C 0.46 15.44 6.44 71.24 0.46 15.90 16 10 O -0.53 -19.54 14.96 21.96 0.33 -19.21 16 11 O -0.34 -13.25 9.61 -45.06 -0.43 -13.68 16 12 C 0.07 2.73 5.94 71.24 0.42 3.15 16 13 C 0.44 21.98 7.86 87.66 0.69 22.67 16 14 O -0.62 -35.67 16.08 15.73 0.25 -35.42 16 15 N -0.56 -29.21 5.29 -306.98 -1.62 -30.83 16 16 C -0.34 -19.37 9.68 84.04 0.81 -18.55 16 17 H 0.09 5.10 7.16 -2.91 -0.02 5.08 16 18 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 19 N -0.92 -49.11 13.05 21.66 0.28 -48.82 16 20 Si 1.00 42.24 29.55 68.60 2.03 44.26 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 0.83 6.82 -2.39 -0.02 0.82 16 26 H 0.08 0.87 6.65 -2.39 -0.02 0.86 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.04 7.84 -2.38 -0.02 1.02 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.78 7.84 -2.39 -0.02 1.76 16 32 H 0.05 1.33 7.85 -2.39 -0.02 1.31 16 33 H 0.06 1.31 6.78 -2.39 -0.02 1.30 16 34 H 0.05 1.33 8.09 -2.39 -0.02 1.31 16 35 H 0.10 1.50 6.70 -2.39 -0.02 1.48 16 36 H 0.10 3.72 8.13 -2.39 -0.02 3.70 16 37 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 38 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 39 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -69.16 320.58 5.62 -63.53 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.33 Total: 29.31 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 4.46 Total: 10.85 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -1.34 Total: -79.65 kcal Atomic # 8 Polarization: -68.45 SS G_CDS: 0.15 Total: -68.31 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -69.16 5.62 -63.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837935962.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.702 kcal (2) G-P(sol) polarization free energy of solvation -69.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds