Wall clock time and date at job start Mon Mar 30 2020 01:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.39223 * 2 1 4 4 C 1.54576 * 110.54674 * 237.50322 * 2 1 3 5 5 C 1.54490 * 102.14666 * 214.35604 * 4 2 1 6 6 H 1.09004 * 110.36318 * 134.18108 * 5 4 2 7 7 N 1.46496 * 110.36963 * 256.50893 * 5 4 2 8 8 C 1.34776 * 120.00140 * 201.85596 * 7 5 4 9 9 O 1.21284 * 119.99738 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00015 * 179.97438 * 8 7 5 11 11 C 1.53005 * 109.46912 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46951 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47125 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47307 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00034 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99997 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00128 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99815 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47074 * 89.99894 * 18 16 14 20 20 H 1.48500 * 109.46958 * 209.99904 * 18 16 14 21 21 H 1.48508 * 109.47141 * 329.99997 * 18 16 14 22 22 C 1.51330 * 104.82289 * 15.34869 * 5 4 2 23 23 O 1.20828 * 125.09250 * 182.27691 * 22 5 4 24 24 O 1.34059 * 109.81174 * 2.30877 * 22 5 4 25 25 H 1.08997 * 109.47177 * 300.70235 * 1 2 3 26 26 H 1.08998 * 109.47237 * 60.70472 * 1 2 3 27 27 H 1.09000 * 109.46748 * 180.70044 * 1 2 3 28 28 H 1.09002 * 110.86557 * 332.52612 * 4 2 1 29 29 H 1.09001 * 110.86582 * 96.19094 * 4 2 1 30 30 H 0.97003 * 120.00013 * 21.85406 * 7 5 4 31 31 H 1.09002 * 109.47551 * 300.00148 * 10 8 7 32 32 H 1.08999 * 109.47261 * 60.00235 * 10 8 7 33 33 H 1.09000 * 109.46787 * 299.99735 * 11 10 8 34 34 H 1.08991 * 109.47186 * 60.00247 * 11 10 8 35 35 H 1.08998 * 109.47067 * 300.00194 * 12 11 10 36 36 H 1.09007 * 109.46908 * 60.00200 * 12 11 10 37 37 H 1.08998 * 109.47572 * 300.00210 * 13 12 11 38 38 H 1.09003 * 109.47193 * 60.00167 * 13 12 11 39 39 H 0.97000 * 120.00221 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0725 -0.7776 -1.2208 5 6 3.3541 -1.4249 -0.6505 6 1 3.4101 -2.4744 -0.9398 7 7 4.5407 -0.7026 -1.1158 8 6 5.7420 -1.3135 -1.1224 9 8 5.8407 -2.4614 -0.7436 10 6 6.9625 -0.5706 -1.6016 11 6 8.1856 -1.4850 -1.5077 12 6 9.4248 -0.7306 -1.9936 13 6 10.6480 -1.6447 -1.8992 14 6 11.8687 -0.9014 -2.3771 15 1 11.7810 0.1209 -2.7142 16 6 13.0977 -1.5265 -2.3842 17 7 13.2047 -2.7712 -1.9733 18 14 14.6107 -0.6054 -2.9774 19 1 15.2484 0.0896 -1.8304 20 1 15.5741 -1.5667 -3.5715 21 1 14.2123 0.3932 -4.0018 22 6 3.2161 -1.2992 0.8512 23 8 4.0425 -1.6566 1.6571 24 8 2.0394 -0.7326 1.1535 25 1 -0.3633 0.5247 0.8836 26 1 -0.3633 0.5028 -0.8962 27 1 -0.3633 -1.0276 0.0126 28 1 1.3626 -1.5397 -1.5425 29 1 2.3117 -0.0982 -2.0389 30 1 4.4617 0.2154 -1.4192 31 1 6.8176 -0.2634 -2.6374 32 1 7.1188 0.3108 -0.9798 33 1 8.3307 -1.7924 -0.4721 34 1 8.0291 -2.3661 -2.1299 35 1 9.2799 -0.4227 -3.0291 36 1 9.5811 0.1505 -1.3710 37 1 10.7928 -1.9522 -0.8635 38 1 10.4920 -2.5259 -2.5214 39 1 14.0692 -3.2111 -1.9786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848072827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:17 Heat of formation + Delta-G solvation = -142.893459 kcal Electronic energy + Delta-G solvation = -19977.729418 eV Core-core repulsion = 16691.684840 eV Total energy + Delta-G solvation = -3286.044578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.60831 -39.48094 -37.87338 -35.44635 -34.79234 -32.99681 -32.59132 -30.62632 -29.27992 -25.86539 -25.05497 -22.77305 -22.34699 -21.34301 -20.53893 -19.96181 -17.92410 -17.26419 -16.93344 -16.28540 -16.17562 -15.79076 -15.53532 -14.80659 -14.45641 -14.21644 -13.85305 -13.75146 -13.37047 -13.02494 -12.76248 -12.58318 -12.34450 -12.15181 -11.77889 -11.67933 -11.55831 -11.01808 -10.98378 -10.95067 -10.52878 -10.49326 -10.39920 -9.90662 -9.59609 -9.31574 -9.21306 -8.96625 -8.28491 -5.93095 -3.95676 1.64424 2.57684 2.77413 2.95845 3.35464 3.41332 3.44345 3.54671 3.64277 3.93036 4.22774 4.48792 4.50562 4.73808 4.77544 4.94681 5.09647 5.17803 5.25544 5.30617 5.35396 5.42182 5.48443 5.82195 5.97103 6.14591 6.30664 6.38844 6.55605 6.85473 7.03215 7.15240 7.21199 7.25486 7.76358 7.92542 8.08336 8.13594 8.49902 9.12066 9.67793 11.18247 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.054253 B = 0.002644 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.979135 B =10585.884479 C =10783.139047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.078 3.922 3 H 0.097 0.903 4 C -0.159 4.159 5 C 0.087 3.913 6 H 0.130 0.870 7 N -0.726 5.726 8 C 0.513 3.487 9 O -0.515 6.515 10 C -0.135 4.135 11 C -0.105 4.105 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.466 3.534 23 O -0.426 6.426 24 O -0.345 6.345 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.405 0.595 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.895 8.594 -0.700 30.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.022 3.978 3 H 0.115 0.885 4 C -0.197 4.197 5 C -0.021 4.021 6 H 0.148 0.852 7 N -0.383 5.383 8 C 0.301 3.699 9 O -0.388 6.388 10 C -0.175 4.175 11 C -0.143 4.143 12 C -0.147 4.147 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C 0.302 3.698 23 O -0.305 6.305 24 O -0.263 6.263 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.240 0.760 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -28.380 7.402 0.210 29.330 hybrid contribution 0.819 0.902 -0.526 1.327 sum -27.561 8.304 -0.316 28.786 Atomic orbital electron populations 1.21913 0.91444 1.03924 1.03609 1.23756 0.96585 0.95432 0.82002 0.88530 1.23340 0.96179 1.01630 0.98515 1.22125 0.86793 1.01467 0.91704 0.85200 1.45973 1.06675 1.17150 1.68526 1.21284 0.84194 0.87512 0.76956 1.90750 1.85188 1.17781 1.45065 1.21794 0.92692 1.00366 1.02660 1.21477 0.92300 0.97783 1.02716 1.21644 0.94804 0.99025 0.99249 1.19099 0.90816 0.94567 0.97307 1.21279 0.92833 0.98907 1.42820 0.92768 1.25049 0.99060 0.94917 0.95596 1.69973 1.24478 1.11396 1.47587 0.86608 0.82956 0.79568 0.78924 1.20712 1.21266 1.19942 1.23591 0.79610 0.75064 0.91522 1.90788 1.38708 1.44158 1.56860 1.87097 1.35478 1.63257 1.40428 0.90965 0.89819 0.91085 0.87594 0.87528 0.75999 0.88890 0.88974 0.91650 0.91710 0.93463 0.93460 0.96553 0.96572 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 9.57 37.16 0.36 -0.07 16 2 C 0.08 0.36 4.17 -25.90 -0.11 0.25 16 3 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 4 C -0.16 -0.59 6.39 -25.12 -0.16 -0.75 16 5 C 0.09 0.76 3.28 -67.99 -0.22 0.54 16 6 H 0.13 1.30 7.66 -51.93 -0.40 0.90 16 7 N -0.73 -6.66 5.11 -53.87 -0.28 -6.94 16 8 C 0.51 7.10 7.82 -10.99 -0.09 7.02 16 9 O -0.51 -9.62 15.69 5.55 0.09 -9.53 16 10 C -0.14 -1.76 5.70 -27.88 -0.16 -1.92 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 13 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 14 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 15 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -27.83 13.29 55.43 0.74 -27.09 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.47 5.75 8.20 36.31 0.30 6.05 16 23 O -0.43 -7.47 18.00 -18.41 -0.33 -7.80 16 24 O -0.35 -3.40 10.76 -38.46 -0.41 -3.81 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.11 0.26 7.93 -51.93 -0.41 -0.15 16 29 H 0.11 0.16 7.85 -51.93 -0.41 -0.25 16 30 H 0.40 2.16 8.46 -40.82 -0.35 1.82 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 34 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -38.19 333.58 -7.25 -45.44 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -6.17 Total: -5.49 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.89 Total: -6.87 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.46 Total: -34.03 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.66 Total: -21.14 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -38.19 -7.25 -45.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848072827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.450 kcal (2) G-P(sol) polarization free energy of solvation -38.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds