Wall clock time and date at job start Mon Mar 30 2020 01:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.39223 * 2 1 4 4 C 1.54576 * 110.54674 * 237.50322 * 2 1 3 5 5 C 1.54490 * 102.14666 * 214.35604 * 4 2 1 6 6 H 1.09004 * 110.36318 * 134.18108 * 5 4 2 7 7 N 1.46496 * 110.36963 * 256.50893 * 5 4 2 8 8 C 1.34776 * 120.00140 * 201.85596 * 7 5 4 9 9 O 1.21284 * 119.99738 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00015 * 179.97438 * 8 7 5 11 11 C 1.53005 * 109.46912 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46951 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47125 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47307 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00034 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99997 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00128 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99815 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47074 * 89.99894 * 18 16 14 20 20 H 1.48500 * 109.46958 * 209.99904 * 18 16 14 21 21 H 1.48508 * 109.47141 * 329.99997 * 18 16 14 22 22 C 1.51330 * 104.82289 * 15.34869 * 5 4 2 23 23 O 1.20828 * 125.09250 * 182.27691 * 22 5 4 24 24 O 1.34059 * 109.81174 * 2.30877 * 22 5 4 25 25 H 1.08997 * 109.47177 * 300.70235 * 1 2 3 26 26 H 1.08998 * 109.47237 * 60.70472 * 1 2 3 27 27 H 1.09000 * 109.46748 * 180.70044 * 1 2 3 28 28 H 1.09002 * 110.86557 * 332.52612 * 4 2 1 29 29 H 1.09001 * 110.86582 * 96.19094 * 4 2 1 30 30 H 0.97003 * 120.00013 * 21.85406 * 7 5 4 31 31 H 1.09002 * 109.47551 * 300.00148 * 10 8 7 32 32 H 1.08999 * 109.47261 * 60.00235 * 10 8 7 33 33 H 1.09000 * 109.46787 * 299.99735 * 11 10 8 34 34 H 1.08991 * 109.47186 * 60.00247 * 11 10 8 35 35 H 1.08998 * 109.47067 * 300.00194 * 12 11 10 36 36 H 1.09007 * 109.46908 * 60.00200 * 12 11 10 37 37 H 1.08998 * 109.47572 * 300.00210 * 13 12 11 38 38 H 1.09003 * 109.47193 * 60.00167 * 13 12 11 39 39 H 0.97000 * 120.00221 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0725 -0.7776 -1.2208 5 6 3.3541 -1.4249 -0.6505 6 1 3.4101 -2.4744 -0.9398 7 7 4.5407 -0.7026 -1.1158 8 6 5.7420 -1.3135 -1.1224 9 8 5.8407 -2.4614 -0.7436 10 6 6.9625 -0.5706 -1.6016 11 6 8.1856 -1.4850 -1.5077 12 6 9.4248 -0.7306 -1.9936 13 6 10.6480 -1.6447 -1.8992 14 6 11.8687 -0.9014 -2.3771 15 1 11.7810 0.1209 -2.7142 16 6 13.0977 -1.5265 -2.3842 17 7 13.2047 -2.7712 -1.9733 18 14 14.6107 -0.6054 -2.9774 19 1 15.2484 0.0896 -1.8304 20 1 15.5741 -1.5667 -3.5715 21 1 14.2123 0.3932 -4.0018 22 6 3.2161 -1.2992 0.8512 23 8 4.0425 -1.6566 1.6571 24 8 2.0394 -0.7326 1.1535 25 1 -0.3633 0.5247 0.8836 26 1 -0.3633 0.5028 -0.8962 27 1 -0.3633 -1.0276 0.0126 28 1 1.3626 -1.5397 -1.5425 29 1 2.3117 -0.0982 -2.0389 30 1 4.4617 0.2154 -1.4192 31 1 6.8176 -0.2634 -2.6374 32 1 7.1188 0.3108 -0.9798 33 1 8.3307 -1.7924 -0.4721 34 1 8.0291 -2.3661 -2.1299 35 1 9.2799 -0.4227 -3.0291 36 1 9.5811 0.1505 -1.3710 37 1 10.7928 -1.9522 -0.8635 38 1 10.4920 -2.5259 -2.5214 39 1 14.0692 -3.2111 -1.9786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848072827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:17 Heat of formation + Delta-G solvation = -170.474167 kcal Electronic energy + Delta-G solvation = -19978.925407 eV Core-core repulsion = 16691.684840 eV Total energy + Delta-G solvation = -3287.240567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.38363 -40.54704 -38.84217 -36.75111 -36.11441 -34.62241 -33.50704 -31.82843 -30.48820 -27.46489 -25.80996 -24.35115 -22.95600 -22.26387 -21.81682 -21.43401 -18.66496 -18.39053 -18.22244 -17.88070 -17.17053 -16.76071 -16.57008 -16.40544 -15.70397 -15.20221 -15.05430 -14.63634 -14.53311 -13.81004 -13.76736 -13.60916 -13.55942 -13.24289 -12.98642 -12.84309 -12.78609 -12.34414 -12.22342 -12.16926 -12.13273 -11.91786 -11.50977 -11.37884 -11.36576 -11.18284 -10.83654 -10.55277 -10.22545 -8.18542 -6.31022 0.74193 1.40327 1.43017 1.53526 1.54021 2.04503 2.17869 2.42183 2.85371 3.14092 3.15080 3.55460 3.78554 3.92832 4.03384 4.14576 4.20191 4.28550 4.60106 4.68804 4.71701 4.81409 4.83178 4.87375 4.89619 5.01260 5.18300 5.18644 5.30822 5.33466 5.38823 5.57037 5.71809 5.77938 5.88076 6.24902 6.27949 6.41579 6.87744 7.18199 7.38667 8.93860 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.054253 B = 0.002644 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.979135 B =10585.884479 C =10783.139047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.068 3.932 3 H 0.119 0.881 4 C -0.138 4.138 5 C 0.086 3.914 6 H 0.115 0.885 7 N -0.702 5.702 8 C 0.510 3.490 9 O -0.575 6.575 10 C -0.125 4.125 11 C -0.099 4.099 12 C -0.094 4.094 13 C 0.017 3.983 14 C -0.541 4.541 15 H 0.068 0.932 16 C -0.009 4.009 17 N -0.939 5.939 18 Si 0.971 3.029 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.257 1.257 22 C 0.465 3.535 23 O -0.495 6.495 24 O -0.362 6.362 25 H 0.065 0.935 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.143 0.857 30 H 0.428 0.572 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.059 0.941 37 H -0.020 1.020 38 H -0.015 1.015 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.551 11.941 -3.000 32.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 H 0.137 0.863 4 C -0.176 4.176 5 C -0.022 4.022 6 H 0.133 0.867 7 N -0.360 5.360 8 C 0.298 3.702 9 O -0.453 6.453 10 C -0.164 4.164 11 C -0.137 4.137 12 C -0.132 4.132 13 C -0.020 4.020 14 C -0.578 4.578 15 H 0.086 0.914 16 C -0.206 4.206 17 N -0.580 5.580 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.181 1.181 22 C 0.304 3.696 23 O -0.380 6.380 24 O -0.279 6.279 25 H 0.084 0.916 26 H 0.132 0.868 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.161 0.839 30 H 0.268 0.732 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.078 0.922 37 H -0.001 1.001 38 H 0.004 0.996 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -30.118 10.834 -2.127 32.078 hybrid contribution 1.214 -0.143 0.216 1.242 sum -28.904 10.691 -1.911 30.877 Atomic orbital electron populations 1.21974 0.89811 1.04050 1.04836 1.24284 0.97841 0.95936 0.80535 0.86344 1.23438 0.93139 1.02280 0.98694 1.22237 0.88796 1.01516 0.89627 0.86695 1.45691 1.05499 1.18019 1.66797 1.21440 0.85698 0.86789 0.76235 1.90742 1.86183 1.20450 1.47896 1.21678 0.89762 0.99352 1.05596 1.21270 0.94032 0.98160 1.00250 1.21437 0.92889 0.98012 1.00828 1.19071 0.93822 0.94821 0.94298 1.21758 0.93715 0.99631 1.42740 0.91390 1.26134 1.03082 0.95822 0.95584 1.70139 1.25545 1.13446 1.48845 0.85355 0.78040 0.78277 0.78796 1.19829 1.20963 1.18077 1.24194 0.79313 0.73547 0.92543 1.90745 1.41331 1.47040 1.58855 1.87075 1.34246 1.63092 1.43450 0.91569 0.86766 0.91508 0.85691 0.83858 0.73240 0.85030 0.86494 0.94663 0.93528 0.91488 0.92192 1.00124 0.99625 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.34 9.57 71.98 0.69 0.35 16 2 C 0.07 0.41 4.17 31.13 0.13 0.54 16 3 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 4 C -0.14 -0.48 6.39 31.64 0.20 -0.28 16 5 C 0.09 1.39 3.28 44.95 0.15 1.54 16 6 H 0.12 2.30 7.66 -2.38 -0.02 2.28 16 7 N -0.70 -11.29 5.11 -442.72 -2.26 -13.55 16 8 C 0.51 13.76 7.82 87.66 0.69 14.44 16 9 O -0.57 -22.44 15.69 -3.04 -0.05 -22.49 16 10 C -0.12 -2.98 5.70 29.85 0.17 -2.81 16 11 C -0.10 -3.65 4.50 30.60 0.14 -3.51 16 12 C -0.09 -3.87 5.15 30.59 0.16 -3.71 16 13 C 0.02 0.95 4.97 29.85 0.15 1.10 16 14 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 15 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 16 C -0.01 -0.55 5.46 84.66 0.46 -0.09 16 17 N -0.94 -60.05 13.29 21.45 0.28 -59.77 16 18 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 22 C 0.46 11.65 8.20 71.44 0.59 12.23 16 23 O -0.50 -18.53 18.00 21.63 0.39 -18.14 16 24 O -0.36 -6.87 10.76 -50.11 -0.54 -7.40 16 25 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.12 0.07 7.93 -2.39 -0.02 0.05 16 29 H 0.14 -0.45 7.85 -2.39 -0.02 -0.47 16 30 H 0.43 2.75 8.46 -92.71 -0.78 1.96 16 31 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.03 1.48 8.10 -2.39 -0.02 1.46 16 34 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 37 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 38 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -90.83 333.58 3.86 -86.98 By element: Atomic # 1 Polarization: -1.47 SS G_CDS: 0.25 Total: -1.22 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 3.75 Total: -11.62 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -1.98 Total: -73.32 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.20 Total: -48.04 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -90.83 3.86 -86.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848072827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.499 kcal (2) G-P(sol) polarization free energy of solvation -90.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds