Wall clock time and date at job start Mon Mar 30 2020 01:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47546 * 2 1 4 4 C 1.50699 * 109.47458 * 239.99721 * 2 1 3 5 5 H 1.07994 * 120.00588 * 240.00679 * 4 2 1 6 6 C 1.37877 * 119.99779 * 59.99440 * 4 2 1 7 7 N 1.31516 * 120.00274 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00271 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46764 * 90.00321 * 8 6 4 10 10 H 1.48493 * 109.47640 * 210.00376 * 8 6 4 11 11 H 1.48497 * 109.47023 * 330.00699 * 8 6 4 12 12 C 1.50706 * 109.47421 * 119.99723 * 2 1 3 13 13 O 1.20824 * 120.00104 * 119.99765 * 12 2 1 14 14 O 1.34230 * 119.99717 * 300.00321 * 12 2 1 15 15 C 1.45199 * 116.99614 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47075 * 179.97438 * 15 14 12 17 17 C 1.53002 * 110.43306 * 59.29682 * 16 15 14 18 18 C 1.54625 * 110.48866 * 181.84240 * 16 15 14 19 19 C 1.54685 * 101.67116 * 143.39709 * 18 16 15 20 20 N 1.46768 * 105.53432 * 334.73619 * 19 18 16 21 21 C 1.46497 * 124.34839 * 196.90386 * 20 19 18 22 22 C 1.34421 * 111.29639 * 16.92760 * 20 19 18 23 23 O 1.21284 * 124.93977 * 179.55440 * 22 20 19 24 24 H 1.09001 * 109.47231 * 60.00176 * 1 2 3 25 25 H 1.09003 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46960 * 300.00095 * 1 2 3 27 27 H 0.96995 * 120.00517 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47177 * 299.99820 * 15 14 12 29 29 H 1.09001 * 109.47399 * 59.99991 * 15 14 12 30 30 H 1.09003 * 109.46873 * 60.70425 * 17 16 15 31 31 H 1.09003 * 109.46803 * 180.70049 * 17 16 15 32 32 H 1.08997 * 109.47619 * 300.69865 * 17 16 15 33 33 H 1.09011 * 110.96569 * 261.59220 * 18 16 15 34 34 H 1.08996 * 110.97309 * 25.35664 * 18 16 15 35 35 H 1.09005 * 110.29349 * 215.67908 * 19 18 16 36 36 H 1.09001 * 110.21664 * 93.75773 * 19 18 16 37 37 H 1.09001 * 109.46698 * 180.02562 * 21 20 19 38 38 H 1.08999 * 109.47231 * 299.99819 * 21 20 19 39 39 H 1.08996 * 109.47442 * 60.00347 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3426 -2.1619 -4.4118 10 1 2.4865 -0.1416 -5.1123 11 1 3.6293 -1.7584 -3.7122 12 6 2.0324 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1197 14 8 1.7081 -0.2517 2.4496 15 6 2.2268 -0.9862 3.5897 16 6 1.7559 -0.3189 4.8834 17 6 0.2273 -0.2913 4.9444 18 6 2.3335 -1.0559 6.1139 19 6 2.6043 0.1185 7.0834 20 7 2.7881 1.2984 6.2301 21 6 3.4066 2.5504 6.6727 22 6 2.3153 1.0826 4.9903 23 8 2.3340 1.8938 4.0889 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7093 1.1616 -3.4844 28 1 1.8626 -2.0130 3.5566 29 1 3.3164 -0.9859 3.5569 30 1 -0.1555 -1.3117 4.9241 31 1 -0.0907 0.1978 5.8652 32 1 -0.1607 0.2595 4.0877 33 1 1.6031 -1.7489 6.5318 34 1 3.2588 -1.5730 5.8601 35 1 3.5071 -0.0712 7.6642 36 1 1.7523 0.2625 7.7479 37 1 3.4189 3.2614 5.8466 38 1 2.8329 2.9662 7.5010 39 1 4.4279 2.3554 6.9998 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870518023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:16 Heat of formation + Delta-G solvation = -124.892032 kcal Electronic energy + Delta-G solvation = -21361.277595 eV Core-core repulsion = 18076.013618 eV Total energy + Delta-G solvation = -3285.263978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85769 -39.27196 -36.47199 -35.85855 -34.05842 -33.77499 -30.54741 -29.65559 -27.07623 -26.98030 -25.11465 -24.45444 -22.63354 -21.30473 -19.62828 -18.95257 -16.70004 -16.56174 -16.46202 -15.92128 -15.86615 -15.21726 -15.05783 -14.27370 -14.14461 -13.82404 -13.41601 -13.18948 -12.78644 -12.60708 -12.48785 -12.37424 -12.21662 -12.15525 -11.80252 -11.41623 -11.12279 -11.00009 -10.92402 -10.69287 -10.59533 -10.25541 -9.98669 -9.96414 -9.48358 -9.00353 -8.94133 -8.82448 -8.36589 -6.01937 -4.07139 2.64395 2.89265 3.35081 3.40143 3.43891 3.44717 3.55582 4.18735 4.20697 4.46794 4.59614 4.77525 4.93620 5.05670 5.13341 5.21229 5.30114 5.31039 5.45515 5.55137 5.56232 5.62428 5.68745 5.76913 5.84042 6.20466 6.28604 6.43561 6.78042 6.97780 6.99629 7.00717 7.35453 7.56353 7.83493 8.03835 8.24206 8.24982 8.96303 9.04134 9.57634 11.05505 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035072 B = 0.004326 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.156919 B = 6471.431373 C = 6625.864191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.510 4.510 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.904 3.096 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.466 3.534 13 O -0.524 6.524 14 O -0.347 6.347 15 C 0.084 3.916 16 C -0.092 4.092 17 C -0.129 4.129 18 C -0.125 4.125 19 C 0.107 3.893 20 N -0.633 5.633 21 C 0.095 3.905 22 C 0.522 3.478 23 O -0.496 6.496 24 H 0.095 0.905 25 H 0.029 0.971 26 H 0.024 0.976 27 H 0.262 0.738 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 -0.955 21.835 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.549 4.549 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.312 3.688 13 O -0.412 6.412 14 O -0.264 6.264 15 C 0.009 3.991 16 C -0.096 4.096 17 C -0.186 4.186 18 C -0.163 4.163 19 C -0.016 4.016 20 N -0.370 5.370 21 C -0.047 4.047 22 C 0.309 3.691 23 O -0.368 6.368 24 H 0.113 0.887 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.813 -0.605 21.213 21.237 hybrid contribution 0.508 -0.548 -0.573 0.941 sum 1.321 -1.153 20.640 20.714 Atomic orbital electron populations 1.21708 0.95674 0.99807 1.01721 1.18735 0.94827 0.97076 0.85515 0.91757 1.21143 1.31747 1.13110 0.88855 0.90720 1.24940 0.95009 0.95029 0.99071 1.69891 1.36669 1.22789 1.23713 0.86392 0.79402 0.79193 0.81863 1.20579 1.21177 1.19729 1.25333 0.76471 0.82943 0.84102 1.90477 1.36755 1.27012 1.86934 1.86718 1.69764 1.55122 1.14816 1.22586 0.98461 0.94916 0.83141 1.21464 0.98812 0.94155 0.95170 1.21658 0.90765 1.03136 1.03049 1.22759 1.02636 0.97048 0.93814 1.22041 1.01830 0.84418 0.93304 1.48171 1.61550 1.14816 1.12435 1.21520 0.96970 0.85281 1.00909 1.20671 0.77380 0.89316 0.81779 1.90795 1.55043 1.50018 1.40916 0.88680 0.95144 0.95740 0.92779 0.90847 0.91897 0.91233 0.92404 0.90297 0.88477 0.89532 0.90391 0.91100 0.89832 0.92323 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.90 37.16 0.33 -2.95 16 2 C 0.06 1.56 2.74 -92.92 -0.25 1.30 16 3 H 0.06 1.85 8.14 -51.93 -0.42 1.42 16 4 C -0.51 -14.95 8.37 -34.44 -0.29 -15.24 16 5 H 0.07 2.26 6.76 -52.49 -0.35 1.91 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.78 11.32 55.43 0.63 -25.15 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.47 11.71 7.25 36.01 0.26 11.97 16 13 O -0.52 -13.95 15.21 -18.75 -0.29 -14.24 16 14 O -0.35 -7.51 8.53 -44.34 -0.38 -7.89 16 15 C 0.08 1.41 4.29 37.16 0.16 1.57 16 16 C -0.09 -1.20 0.72 -154.52 -0.11 -1.31 16 17 C -0.13 -1.52 8.37 37.16 0.31 -1.21 16 18 C -0.12 -1.02 6.25 -24.99 -0.16 -1.17 16 19 C 0.11 0.79 7.35 -3.01 -0.02 0.77 16 20 N -0.63 -7.13 3.33 -180.15 -0.60 -7.73 16 21 C 0.10 0.87 11.14 59.85 0.67 1.53 16 22 C 0.52 8.07 6.76 -10.86 -0.07 7.99 16 23 O -0.50 -10.13 16.38 -7.95 -0.13 -10.26 16 24 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.54 8.11 -51.93 -0.42 0.12 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 29 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.16 7.71 -51.93 -0.40 0.76 16 33 H 0.10 0.56 7.90 -51.92 -0.41 0.15 16 34 H 0.09 0.67 7.91 -51.93 -0.41 0.26 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.92 7.53 -51.93 -0.39 0.53 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 324.79 15.07 4.89 4.89 Total: -1.00 -34.92 324.79 -6.23 -41.15 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.07 Total: -2.78 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 0.73 Total: 4.90 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.03 Total: -32.88 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.79 Total: -32.39 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.92 -6.23 -41.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870518023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.741 kcal (2) G-P(sol) polarization free energy of solvation -34.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds