Wall clock time and date at job start Mon Mar 30 2020 01:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47124 * 2 1 4 4 C 1.50703 * 109.46961 * 119.99861 * 2 1 3 5 5 H 1.07993 * 119.99797 * 120.00173 * 4 2 1 6 6 C 1.37872 * 119.99842 * 299.99969 * 4 2 1 7 7 N 1.31516 * 120.00172 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99945 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47019 * 89.99725 * 8 6 4 10 10 H 1.48495 * 109.47390 * 210.00165 * 8 6 4 11 11 H 1.48507 * 109.46987 * 330.00050 * 8 6 4 12 12 C 1.50701 * 109.47132 * 239.99852 * 2 1 3 13 13 O 1.20820 * 119.99987 * 239.99969 * 12 2 1 14 14 O 1.34225 * 119.99885 * 60.00104 * 12 2 1 15 15 C 1.45199 * 117.00030 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47310 * 179.97438 * 15 14 12 17 17 C 1.53003 * 110.43494 * 302.54305 * 16 15 14 18 18 C 1.54627 * 110.48869 * 180.02562 * 16 15 14 19 19 C 1.54482 * 101.76258 * 265.99062 * 18 16 15 20 20 N 1.46763 * 105.47085 * 334.57759 * 19 18 16 21 21 C 1.46506 * 124.34806 * 197.01692 * 20 19 18 22 22 C 1.34415 * 111.29895 * 17.28672 * 20 19 18 23 23 O 1.21288 * 124.94000 * 179.30139 * 22 20 19 24 24 H 1.09000 * 109.47427 * 299.99719 * 1 2 3 25 25 H 1.08995 * 109.47302 * 60.00458 * 1 2 3 26 26 H 1.09002 * 109.47124 * 180.02562 * 1 2 3 27 27 H 0.97006 * 119.99603 * 179.97438 * 7 6 4 28 28 H 1.09008 * 109.46897 * 59.99966 * 15 14 12 29 29 H 1.09001 * 109.46979 * 299.99995 * 15 14 12 30 30 H 1.09000 * 109.47219 * 297.45635 * 17 16 15 31 31 H 1.08993 * 109.47229 * 57.45666 * 17 16 15 32 32 H 1.08996 * 109.47400 * 177.46015 * 17 16 15 33 33 H 1.08995 * 110.97572 * 147.86561 * 18 16 15 34 34 H 1.09005 * 111.00408 * 24.11779 * 18 16 15 35 35 H 1.08999 * 110.24408 * 215.58510 * 19 18 16 36 36 H 1.08991 * 110.25280 * 93.58277 * 19 18 16 37 37 H 1.08999 * 109.46892 * 90.00728 * 21 20 19 38 38 H 1.09000 * 109.46803 * 209.99902 * 21 20 19 39 39 H 1.09000 * 109.47214 * 330.00695 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4879 -2.5653 3.7123 12 6 2.0323 -0.7104 -1.2305 13 8 2.7270 -1.6928 -1.1196 14 8 1.7081 -0.2519 -2.4495 15 6 2.2277 -0.9857 -3.5896 16 6 1.7556 -0.3193 -4.8834 17 6 0.2275 -0.2529 -4.9233 18 6 2.2959 -1.0835 -6.1142 19 6 3.5888 -0.2990 -6.4294 20 7 3.3698 1.0488 -5.8915 21 6 4.1615 2.2249 -6.2608 22 6 2.3534 1.0644 -5.0120 23 8 1.9698 2.0455 -4.4110 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7081 1.1609 3.4844 28 1 1.8642 -2.0129 -3.5568 29 1 3.3172 -0.9846 -3.5565 30 1 -0.1803 -1.2637 -4.9201 31 1 -0.1356 0.2881 -4.0496 32 1 -0.0902 0.2641 -5.8287 33 1 1.5939 -1.0292 -6.9463 34 1 2.5202 -2.1202 -5.8629 35 1 3.7493 -0.2536 -7.5066 36 1 4.4427 -0.7666 -5.9395 37 1 3.7033 2.7164 -7.1191 38 1 4.1955 2.9184 -5.4206 39 1 5.1745 1.9151 -6.5176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870518026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:18 Heat of formation + Delta-G solvation = -125.687862 kcal Electronic energy + Delta-G solvation = -21392.938141 eV Core-core repulsion = 18107.639654 eV Total energy + Delta-G solvation = -3285.298487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.87867 -39.33481 -36.49759 -35.86794 -34.12477 -33.81513 -30.57712 -29.71841 -27.12067 -26.83770 -25.14123 -24.43343 -22.74363 -21.29416 -19.70965 -18.96499 -16.90925 -16.57230 -16.36952 -15.95684 -15.87967 -15.18503 -15.04339 -14.25087 -14.02800 -13.91539 -13.67162 -13.19632 -12.74328 -12.73451 -12.45911 -12.40273 -12.16851 -12.08960 -11.74661 -11.43783 -11.12798 -11.02154 -10.95713 -10.74060 -10.63965 -10.26822 -10.03784 -10.00867 -9.51826 -9.06372 -8.97982 -8.81242 -8.39636 -6.04808 -4.10420 2.64517 2.89821 3.32970 3.36935 3.37318 3.40360 3.49932 4.16791 4.27568 4.44996 4.52609 4.82229 4.91154 5.04011 5.15226 5.21566 5.28042 5.33222 5.47183 5.53586 5.58219 5.58367 5.67629 5.83896 5.86748 6.20138 6.29985 6.46049 6.75181 6.95579 6.96196 7.00832 7.28268 7.51901 7.80631 8.00609 8.20489 8.23543 8.90305 8.99203 9.54621 11.02535 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.004428 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.059872 B = 6321.173226 C = 6354.695127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.512 4.512 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.904 3.096 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.466 3.534 13 O -0.522 6.522 14 O -0.353 6.353 15 C 0.084 3.916 16 C -0.092 4.092 17 C -0.128 4.128 18 C -0.124 4.124 19 C 0.102 3.898 20 N -0.632 5.632 21 C 0.097 3.903 22 C 0.526 3.474 23 O -0.503 6.503 24 H 0.095 0.905 25 H 0.025 0.975 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.759 -1.951 -20.392 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.550 4.550 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.311 3.689 13 O -0.409 6.409 14 O -0.270 6.270 15 C 0.009 3.991 16 C -0.096 4.096 17 C -0.186 4.186 18 C -0.162 4.162 19 C -0.021 4.021 20 N -0.369 5.369 21 C -0.044 4.044 22 C 0.312 3.688 23 O -0.375 6.375 24 H 0.114 0.886 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.731 -1.523 -19.938 20.182 hybrid contribution 0.620 -0.564 0.652 1.062 sum 3.351 -2.087 -19.286 19.686 Atomic orbital electron populations 1.21712 0.95552 0.99895 1.01823 1.18752 0.94941 0.97002 0.85453 0.91823 1.21131 1.31849 1.13186 0.88820 0.90706 1.24941 0.94949 0.95047 0.99094 1.69896 1.36468 1.22836 1.23769 0.86387 0.78483 0.80124 0.81828 1.20575 1.21139 1.19711 1.25378 0.76454 0.83048 0.83992 1.90481 1.36645 1.26912 1.86864 1.86715 1.69964 1.55344 1.14997 1.22593 0.98465 0.95094 0.82990 1.21436 0.98990 0.94187 0.94989 1.21641 0.90833 1.02683 1.03405 1.22724 0.96634 0.99898 0.96899 1.22087 0.98317 0.82170 0.99523 1.48178 1.34496 1.09409 1.44770 1.21510 0.94639 0.87183 1.01107 1.20617 0.79744 0.90317 0.78133 1.90748 1.62989 1.37679 1.46122 0.88636 0.95631 0.95084 0.92735 0.90564 0.91816 0.91547 0.90079 0.92469 0.89068 0.88668 0.90237 0.91030 0.92760 0.90579 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.90 37.16 0.33 -2.94 16 2 C 0.06 1.54 2.74 -92.92 -0.25 1.28 16 3 H 0.06 1.80 8.14 -51.93 -0.42 1.37 16 4 C -0.51 -14.80 8.37 -34.44 -0.29 -15.09 16 5 H 0.07 2.24 6.76 -52.49 -0.35 1.88 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.54 11.32 55.43 0.63 -24.92 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 12 C 0.47 11.46 7.25 36.01 0.26 11.72 16 13 O -0.52 -13.58 15.21 -18.75 -0.29 -13.86 16 14 O -0.35 -7.49 9.17 -39.24 -0.36 -7.85 16 15 C 0.08 1.36 4.29 37.16 0.16 1.52 16 16 C -0.09 -1.21 0.72 -154.52 -0.11 -1.32 16 17 C -0.13 -1.61 8.29 37.16 0.31 -1.30 16 18 C -0.12 -1.01 6.23 -25.10 -0.16 -1.17 16 19 C 0.10 0.82 7.35 -3.12 -0.02 0.80 16 20 N -0.63 -7.42 3.33 -180.29 -0.60 -8.02 16 21 C 0.10 0.93 10.97 59.85 0.66 1.58 16 22 C 0.53 8.19 6.59 -10.86 -0.07 8.12 16 23 O -0.50 -10.10 17.42 5.55 0.10 -10.00 16 24 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 25 H 0.02 0.56 8.11 -51.93 -0.42 0.14 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.08 1.14 8.13 -51.92 -0.42 0.72 16 29 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.26 7.60 -51.93 -0.39 0.87 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.59 7.91 -51.93 -0.41 0.18 16 34 H 0.09 0.63 7.90 -51.93 -0.41 0.22 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -34.42 326.30 -5.99 -40.41 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -6.08 Total: -2.39 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 0.72 Total: 4.84 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.03 Total: -32.94 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.55 Total: -31.72 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.42 -5.99 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870518026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.276 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds