Wall clock time and date at job start Mon Mar 30 2020 01:31:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09002 * 109.47124 * 2 1
4 4 C 1.50703 * 109.46961 * 119.99861 * 2 1 3
5 5 H 1.07993 * 119.99797 * 120.00173 * 4 2 1
6 6 C 1.37872 * 119.99842 * 299.99969 * 4 2 1
7 7 N 1.31516 * 120.00172 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 119.99945 * 180.02562 * 6 4 2
9 9 H 1.48504 * 109.47019 * 89.99725 * 8 6 4
10 10 H 1.48495 * 109.47390 * 210.00165 * 8 6 4
11 11 H 1.48507 * 109.46987 * 330.00050 * 8 6 4
12 12 C 1.50701 * 109.47132 * 239.99852 * 2 1 3
13 13 O 1.20820 * 119.99987 * 239.99969 * 12 2 1
14 14 O 1.34225 * 119.99885 * 60.00104 * 12 2 1
15 15 C 1.45199 * 117.00030 * 179.97438 * 14 12 2
16 16 C 1.53000 * 109.47310 * 179.97438 * 15 14 12
17 17 C 1.53003 * 110.43494 * 302.54305 * 16 15 14
18 18 C 1.54627 * 110.48869 * 180.02562 * 16 15 14
19 19 C 1.54482 * 101.76258 * 265.99062 * 18 16 15
20 20 N 1.46763 * 105.47085 * 334.57759 * 19 18 16
21 21 C 1.46506 * 124.34806 * 197.01692 * 20 19 18
22 22 C 1.34415 * 111.29895 * 17.28672 * 20 19 18
23 23 O 1.21288 * 124.94000 * 179.30139 * 22 20 19
24 24 H 1.09000 * 109.47427 * 299.99719 * 1 2 3
25 25 H 1.08995 * 109.47302 * 60.00458 * 1 2 3
26 26 H 1.09002 * 109.47124 * 180.02562 * 1 2 3
27 27 H 0.97006 * 119.99603 * 179.97438 * 7 6 4
28 28 H 1.09008 * 109.46897 * 59.99966 * 15 14 12
29 29 H 1.09001 * 109.46979 * 299.99995 * 15 14 12
30 30 H 1.09000 * 109.47219 * 297.45635 * 17 16 15
31 31 H 1.08993 * 109.47229 * 57.45666 * 17 16 15
32 32 H 1.08996 * 109.47400 * 177.46015 * 17 16 15
33 33 H 1.08995 * 110.97572 * 147.86561 * 18 16 15
34 34 H 1.09005 * 111.00408 * 24.11779 * 18 16 15
35 35 H 1.08999 * 110.24408 * 215.58510 * 19 18 16
36 36 H 1.08991 * 110.25280 * 93.58277 * 19 18 16
37 37 H 1.08999 * 109.46892 * 90.00728 * 21 20 19
38 38 H 1.09000 * 109.46803 * 209.99902 * 21 20 19
39 39 H 1.09000 * 109.47214 * 330.00695 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6532 -1.5884 1.1314
6 6 1.6992 -0.2393 2.4827
7 7 0.9427 0.8297 2.6033
8 14 2.3224 -1.1194 4.0080
9 1 3.6304 -0.5439 4.4119
10 1 1.3444 -0.9489 5.1123
11 1 2.4879 -2.5653 3.7123
12 6 2.0323 -0.7104 -1.2305
13 8 2.7270 -1.6928 -1.1196
14 8 1.7081 -0.2519 -2.4495
15 6 2.2277 -0.9857 -3.5896
16 6 1.7556 -0.3193 -4.8834
17 6 0.2275 -0.2529 -4.9233
18 6 2.2959 -1.0835 -6.1142
19 6 3.5888 -0.2990 -6.4294
20 7 3.3698 1.0488 -5.8915
21 6 4.1615 2.2249 -6.2608
22 6 2.3534 1.0644 -5.0120
23 8 1.9698 2.0455 -4.4110
24 1 -0.3634 0.5138 0.8900
25 1 -0.3633 0.5137 -0.8900
26 1 -0.3633 -1.0277 0.0005
27 1 0.7081 1.1609 3.4844
28 1 1.8642 -2.0129 -3.5568
29 1 3.3172 -0.9846 -3.5565
30 1 -0.1803 -1.2637 -4.9201
31 1 -0.1356 0.2881 -4.0496
32 1 -0.0902 0.2641 -5.8287
33 1 1.5939 -1.0292 -6.9463
34 1 2.5202 -2.1202 -5.8629
35 1 3.7493 -0.2536 -7.5066
36 1 4.4427 -0.7666 -5.9395
37 1 3.7033 2.7164 -7.1191
38 1 4.1955 2.9184 -5.4206
39 1 5.1745 1.9151 -6.5176
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000870518026.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:31:18
Heat of formation + Delta-G solvation = -125.687862 kcal
Electronic energy + Delta-G solvation = -21392.938141 eV
Core-core repulsion = 18107.639654 eV
Total energy + Delta-G solvation = -3285.298487 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.146 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.87867 -39.33481 -36.49759 -35.86794 -34.12477 -33.81513 -30.57712 -29.71841
-27.12067 -26.83770 -25.14123 -24.43343 -22.74363 -21.29416 -19.70965 -18.96499
-16.90925 -16.57230 -16.36952 -15.95684 -15.87967 -15.18503 -15.04339 -14.25087
-14.02800 -13.91539 -13.67162 -13.19632 -12.74328 -12.73451 -12.45911 -12.40273
-12.16851 -12.08960 -11.74661 -11.43783 -11.12798 -11.02154 -10.95713 -10.74060
-10.63965 -10.26822 -10.03784 -10.00867 -9.51826 -9.06372 -8.97982 -8.81242
-8.39636 -6.04808 -4.10420 2.64517 2.89821 3.32970 3.36935 3.37318
3.40360 3.49932 4.16791 4.27568 4.44996 4.52609 4.82229 4.91154
5.04011 5.15226 5.21566 5.28042 5.33222 5.47183 5.53586 5.58219
5.58367 5.67629 5.83896 5.86748 6.20138 6.29985 6.46049 6.75181
6.95579 6.96196 7.00832 7.28268 7.51901 7.80631 8.00609 8.20489
8.23543 8.90305 8.99203 9.54621 11.02535
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.031206 B = 0.004428 C = 0.004405
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 897.059872 B = 6321.173226 C = 6354.695127
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.057 3.943
3 H 0.064 0.936
4 C -0.512 4.512
5 H 0.075 0.925
6 C 0.061 3.939
7 N -0.891 5.891
8 Si 0.904 3.096
9 H -0.280 1.280
10 H -0.286 1.286
11 H -0.272 1.272
12 C 0.466 3.534
13 O -0.522 6.522
14 O -0.353 6.353
15 C 0.084 3.916
16 C -0.092 4.092
17 C -0.128 4.128
18 C -0.124 4.124
19 C 0.102 3.898
20 N -0.632 5.632
21 C 0.097 3.903
22 C 0.526 3.474
23 O -0.503 6.503
24 H 0.095 0.905
25 H 0.025 0.975
26 H 0.030 0.970
27 H 0.263 0.737
28 H 0.076 0.924
29 H 0.063 0.937
30 H 0.066 0.934
31 H 0.080 0.920
32 H 0.056 0.944
33 H 0.091 0.909
34 H 0.095 0.905
35 H 0.079 0.921
36 H 0.071 0.929
37 H 0.054 0.946
38 H 0.075 0.925
39 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.759 -1.951 -20.392 20.670
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.039 3.961
3 H 0.082 0.918
4 C -0.550 4.550
5 H 0.093 0.907
6 C -0.140 4.140
7 N -0.530 5.530
8 Si 0.732 3.268
9 H -0.206 1.206
10 H -0.211 1.211
11 H -0.197 1.197
12 C 0.311 3.689
13 O -0.409 6.409
14 O -0.270 6.270
15 C 0.009 3.991
16 C -0.096 4.096
17 C -0.186 4.186
18 C -0.162 4.162
19 C -0.021 4.021
20 N -0.369 5.369
21 C -0.044 4.044
22 C 0.312 3.688
23 O -0.375 6.375
24 H 0.114 0.886
25 H 0.044 0.956
26 H 0.049 0.951
27 H 0.073 0.927
28 H 0.094 0.906
29 H 0.082 0.918
30 H 0.085 0.915
31 H 0.099 0.901
32 H 0.075 0.925
33 H 0.109 0.891
34 H 0.113 0.887
35 H 0.098 0.902
36 H 0.090 0.910
37 H 0.072 0.928
38 H 0.094 0.906
39 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 2.731 -1.523 -19.938 20.182
hybrid contribution 0.620 -0.564 0.652 1.062
sum 3.351 -2.087 -19.286 19.686
Atomic orbital electron populations
1.21712 0.95552 0.99895 1.01823 1.18752 0.94941 0.97002 0.85453
0.91823 1.21131 1.31849 1.13186 0.88820 0.90706 1.24941 0.94949
0.95047 0.99094 1.69896 1.36468 1.22836 1.23769 0.86387 0.78483
0.80124 0.81828 1.20575 1.21139 1.19711 1.25378 0.76454 0.83048
0.83992 1.90481 1.36645 1.26912 1.86864 1.86715 1.69964 1.55344
1.14997 1.22593 0.98465 0.95094 0.82990 1.21436 0.98990 0.94187
0.94989 1.21641 0.90833 1.02683 1.03405 1.22724 0.96634 0.99898
0.96899 1.22087 0.98317 0.82170 0.99523 1.48178 1.34496 1.09409
1.44770 1.21510 0.94639 0.87183 1.01107 1.20617 0.79744 0.90317
0.78133 1.90748 1.62989 1.37679 1.46122 0.88636 0.95631 0.95084
0.92735 0.90564 0.91816 0.91547 0.90079 0.92469 0.89068 0.88668
0.90237 0.91030 0.92760 0.90579 0.91208
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.27 8.90 37.16 0.33 -2.94 16
2 C 0.06 1.54 2.74 -92.92 -0.25 1.28 16
3 H 0.06 1.80 8.14 -51.93 -0.42 1.37 16
4 C -0.51 -14.80 8.37 -34.44 -0.29 -15.09 16
5 H 0.07 2.24 6.76 -52.49 -0.35 1.88 16
6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16
7 N -0.89 -25.54 11.32 55.43 0.63 -24.92 16
8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16
9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
11 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16
12 C 0.47 11.46 7.25 36.01 0.26 11.72 16
13 O -0.52 -13.58 15.21 -18.75 -0.29 -13.86 16
14 O -0.35 -7.49 9.17 -39.24 -0.36 -7.85 16
15 C 0.08 1.36 4.29 37.16 0.16 1.52 16
16 C -0.09 -1.21 0.72 -154.52 -0.11 -1.32 16
17 C -0.13 -1.61 8.29 37.16 0.31 -1.30 16
18 C -0.12 -1.01 6.23 -25.10 -0.16 -1.17 16
19 C 0.10 0.82 7.35 -3.12 -0.02 0.80 16
20 N -0.63 -7.42 3.33 -180.29 -0.60 -8.02 16
21 C 0.10 0.93 10.97 59.85 0.66 1.58 16
22 C 0.53 8.19 6.59 -10.86 -0.07 8.12 16
23 O -0.50 -10.10 17.42 5.55 0.10 -10.00 16
24 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16
25 H 0.02 0.56 8.11 -51.93 -0.42 0.14 16
26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
28 H 0.08 1.14 8.13 -51.92 -0.42 0.72 16
29 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16
30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
31 H 0.08 1.26 7.60 -51.93 -0.39 0.87 16
32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
33 H 0.09 0.59 7.91 -51.93 -0.41 0.18 16
34 H 0.09 0.63 7.90 -51.93 -0.41 0.22 16
35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16
36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
38 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16
39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
LS Contribution 326.30 15.07 4.92 4.92
Total: -1.00 -34.42 326.30 -5.99 -40.41
By element:
Atomic # 1 Polarization: 3.69 SS G_CDS: -6.08 Total: -2.39 kcal
Atomic # 6 Polarization: 4.12 SS G_CDS: 0.72 Total: 4.84 kcal
Atomic # 7 Polarization: -32.96 SS G_CDS: 0.03 Total: -32.94 kcal
Atomic # 8 Polarization: -31.17 SS G_CDS: -0.55 Total: -31.72 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal
Total LS contribution 4.92 Total: 4.92 kcal
Total: -34.42 -5.99 -40.41 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000870518026.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -85.276 kcal
(2) G-P(sol) polarization free energy of solvation -34.422 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.699 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.688 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds