Wall clock time and date at job start Mon Mar 30 2020 01:31:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09002 * 109.47124 * 2 1
4 4 C 1.50703 * 109.46961 * 119.99861 * 2 1 3
5 5 H 1.07993 * 119.99797 * 120.00173 * 4 2 1
6 6 C 1.37872 * 119.99842 * 299.99969 * 4 2 1
7 7 N 1.31516 * 120.00172 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 119.99945 * 180.02562 * 6 4 2
9 9 H 1.48504 * 109.47019 * 89.99725 * 8 6 4
10 10 H 1.48495 * 109.47390 * 210.00165 * 8 6 4
11 11 H 1.48507 * 109.46987 * 330.00050 * 8 6 4
12 12 C 1.50701 * 109.47132 * 239.99852 * 2 1 3
13 13 O 1.20820 * 119.99987 * 239.99969 * 12 2 1
14 14 O 1.34225 * 119.99885 * 60.00104 * 12 2 1
15 15 C 1.45199 * 117.00030 * 179.97438 * 14 12 2
16 16 C 1.53000 * 109.47310 * 179.97438 * 15 14 12
17 17 C 1.53003 * 110.43494 * 302.54305 * 16 15 14
18 18 C 1.54627 * 110.48869 * 180.02562 * 16 15 14
19 19 C 1.54482 * 101.76258 * 265.99062 * 18 16 15
20 20 N 1.46763 * 105.47085 * 334.57759 * 19 18 16
21 21 C 1.46506 * 124.34806 * 197.01692 * 20 19 18
22 22 C 1.34415 * 111.29895 * 17.28672 * 20 19 18
23 23 O 1.21288 * 124.94000 * 179.30139 * 22 20 19
24 24 H 1.09000 * 109.47427 * 299.99719 * 1 2 3
25 25 H 1.08995 * 109.47302 * 60.00458 * 1 2 3
26 26 H 1.09002 * 109.47124 * 180.02562 * 1 2 3
27 27 H 0.97006 * 119.99603 * 179.97438 * 7 6 4
28 28 H 1.09008 * 109.46897 * 59.99966 * 15 14 12
29 29 H 1.09001 * 109.46979 * 299.99995 * 15 14 12
30 30 H 1.09000 * 109.47219 * 297.45635 * 17 16 15
31 31 H 1.08993 * 109.47229 * 57.45666 * 17 16 15
32 32 H 1.08996 * 109.47400 * 177.46015 * 17 16 15
33 33 H 1.08995 * 110.97572 * 147.86561 * 18 16 15
34 34 H 1.09005 * 111.00408 * 24.11779 * 18 16 15
35 35 H 1.08999 * 110.24408 * 215.58510 * 19 18 16
36 36 H 1.08991 * 110.25280 * 93.58277 * 19 18 16
37 37 H 1.08999 * 109.46892 * 90.00728 * 21 20 19
38 38 H 1.09000 * 109.46803 * 209.99902 * 21 20 19
39 39 H 1.09000 * 109.47214 * 330.00695 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6532 -1.5884 1.1314
6 6 1.6992 -0.2393 2.4827
7 7 0.9427 0.8297 2.6033
8 14 2.3224 -1.1194 4.0080
9 1 3.6304 -0.5439 4.4119
10 1 1.3444 -0.9489 5.1123
11 1 2.4879 -2.5653 3.7123
12 6 2.0323 -0.7104 -1.2305
13 8 2.7270 -1.6928 -1.1196
14 8 1.7081 -0.2519 -2.4495
15 6 2.2277 -0.9857 -3.5896
16 6 1.7556 -0.3193 -4.8834
17 6 0.2275 -0.2529 -4.9233
18 6 2.2959 -1.0835 -6.1142
19 6 3.5888 -0.2990 -6.4294
20 7 3.3698 1.0488 -5.8915
21 6 4.1615 2.2249 -6.2608
22 6 2.3534 1.0644 -5.0120
23 8 1.9698 2.0455 -4.4110
24 1 -0.3634 0.5138 0.8900
25 1 -0.3633 0.5137 -0.8900
26 1 -0.3633 -1.0277 0.0005
27 1 0.7081 1.1609 3.4844
28 1 1.8642 -2.0129 -3.5568
29 1 3.3172 -0.9846 -3.5565
30 1 -0.1803 -1.2637 -4.9201
31 1 -0.1356 0.2881 -4.0496
32 1 -0.0902 0.2641 -5.8287
33 1 1.5939 -1.0292 -6.9463
34 1 2.5202 -2.1202 -5.8629
35 1 3.7493 -0.2536 -7.5066
36 1 4.4427 -0.7666 -5.9395
37 1 3.7033 2.7164 -7.1191
38 1 4.1955 2.9184 -5.4206
39 1 5.1745 1.9151 -6.5176
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000870518026.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:31:18
Heat of formation + Delta-G solvation = -148.138435 kcal
Electronic energy + Delta-G solvation = -21393.911671 eV
Core-core repulsion = 18107.639654 eV
Total energy + Delta-G solvation = -3286.272017 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.146 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-42.01027 -41.07016 -37.81178 -37.37529 -35.93727 -35.23763 -32.67581 -30.57161
-28.21619 -27.90806 -27.29708 -25.51217 -24.49943 -22.22599 -21.57486 -20.04755
-18.67164 -18.06560 -17.91726 -17.48927 -17.27870 -16.89948 -16.23328 -15.96625
-15.15355 -14.94971 -14.84808 -14.71301 -14.28090 -14.01372 -13.76048 -13.46506
-13.37691 -13.13686 -13.09467 -12.98277 -12.77792 -12.63756 -12.51741 -12.32085
-12.09925 -12.06633 -11.99858 -11.58256 -11.13501 -11.03992 -10.69166 -10.55302
-9.72200 -8.20718 -6.35465 1.39609 1.41415 1.43166 1.47496 1.54325
1.87781 2.04280 2.43019 3.08793 3.19444 3.45075 3.60669 3.90613
3.95882 4.18948 4.28549 4.33329 4.41082 4.48066 4.61913 4.65326
4.69645 4.77910 4.82515 4.82907 4.88206 4.96038 5.04835 5.10656
5.27651 5.35631 5.44962 5.59721 5.66554 5.85944 6.05060 6.07262
6.71353 7.02357 7.14293 7.33542 8.86138
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.031206 B = 0.004428 C = 0.004405
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 897.059872 B = 6321.173226 C = 6354.695127
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C 0.048 3.952
3 H 0.038 0.962
4 C -0.538 4.538
5 H 0.059 0.941
6 C 0.019 3.981
7 N -0.912 5.912
8 Si 0.969 3.031
9 H -0.273 1.273
10 H -0.273 1.273
11 H -0.272 1.272
12 C 0.474 3.526
13 O -0.540 6.540
14 O -0.358 6.358
15 C 0.075 3.925
16 C -0.092 4.092
17 C -0.127 4.127
18 C -0.110 4.110
19 C 0.095 3.905
20 N -0.628 5.628
21 C 0.091 3.909
22 C 0.507 3.493
23 O -0.567 6.567
24 H 0.076 0.924
25 H 0.041 0.959
26 H 0.034 0.966
27 H 0.268 0.732
28 H 0.094 0.906
29 H 0.062 0.938
30 H 0.090 0.910
31 H 0.040 0.960
32 H 0.073 0.927
33 H 0.118 0.882
34 H 0.118 0.882
35 H 0.117 0.883
36 H 0.080 0.920
37 H 0.071 0.929
38 H 0.048 0.952
39 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.372 -3.669 -22.357 22.906
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.029 3.971
3 H 0.056 0.944
4 C -0.576 4.576
5 H 0.078 0.922
6 C -0.181 4.181
7 N -0.550 5.550
8 Si 0.793 3.207
9 H -0.199 1.199
10 H -0.198 1.198
11 H -0.196 1.196
12 C 0.319 3.681
13 O -0.430 6.430
14 O -0.275 6.275
15 C 0.001 3.999
16 C -0.096 4.096
17 C -0.184 4.184
18 C -0.148 4.148
19 C -0.026 4.026
20 N -0.362 5.362
21 C -0.051 4.051
22 C 0.294 3.706
23 O -0.445 6.445
24 H 0.095 0.905
25 H 0.060 0.940
26 H 0.053 0.947
27 H 0.077 0.923
28 H 0.112 0.888
29 H 0.080 0.920
30 H 0.108 0.892
31 H 0.059 0.941
32 H 0.092 0.908
33 H 0.136 0.864
34 H 0.137 0.863
35 H 0.135 0.865
36 H 0.099 0.901
37 H 0.089 0.911
38 H 0.067 0.933
39 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 3.368 -3.253 -21.968 22.461
hybrid contribution 0.473 0.015 1.127 1.222
sum 3.840 -3.238 -20.841 21.438
Atomic orbital electron populations
1.21519 0.94305 1.00011 1.01652 1.18660 0.96072 0.95689 0.86658
0.94421 1.21246 1.32722 1.13315 0.90315 0.92239 1.25734 0.94835
0.95665 1.01824 1.69995 1.36649 1.23565 1.24777 0.85391 0.78294
0.78805 0.78179 1.19903 1.19757 1.19631 1.24752 0.76059 0.82455
0.84808 1.90450 1.37441 1.27646 1.87489 1.86672 1.69754 1.55881
1.15177 1.23070 0.98564 0.95971 0.82294 1.21549 0.99246 0.93481
0.95332 1.21640 0.90688 1.03716 1.02386 1.22841 0.96820 1.00320
0.94782 1.22458 0.98557 0.79881 1.01748 1.48417 1.32992 1.11507
1.43309 1.21691 0.96327 0.86516 1.00523 1.21203 0.80570 0.90582
0.78219 1.90705 1.65167 1.39838 1.48809 0.90485 0.93967 0.94666
0.92253 0.88776 0.91952 0.89153 0.94062 0.90803 0.86412 0.86343
0.86456 0.90135 0.91096 0.93337 0.87972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.95 8.90 71.98 0.64 -5.30 16
2 C 0.05 2.68 2.74 -12.28 -0.03 2.64 16
3 H 0.04 2.26 8.14 -2.39 -0.02 2.24 16
4 C -0.54 -31.90 8.37 25.60 0.21 -31.68 16
5 H 0.06 3.64 6.76 -2.91 -0.02 3.62 16
6 C 0.02 1.09 5.30 84.65 0.45 1.54 16
7 N -0.91 -52.94 11.32 21.45 0.24 -52.70 16
8 Si 0.97 45.00 29.54 68.60 2.03 47.03 16
9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16
10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16
12 C 0.47 23.89 7.25 71.24 0.52 24.41 16
13 O -0.54 -28.55 15.21 21.98 0.33 -28.22 16
14 O -0.36 -15.55 9.17 -51.37 -0.47 -16.02 16
15 C 0.08 2.38 4.29 71.98 0.31 2.69 16
16 C -0.09 -2.27 0.72 -52.19 -0.04 -2.31 16
17 C -0.13 -3.03 8.29 71.98 0.60 -2.44 16
18 C -0.11 -1.33 6.23 31.65 0.20 -1.13 16
19 C 0.09 1.13 7.35 86.83 0.64 1.77 16
20 N -0.63 -13.58 3.33 -842.89 -2.81 -16.39 16
21 C 0.09 1.59 10.97 127.77 1.40 3.00 16
22 C 0.51 15.72 6.59 87.90 0.58 16.30 16
23 O -0.57 -23.93 17.42 -3.05 -0.05 -23.98 16
24 H 0.08 4.20 6.07 -2.39 -0.01 4.18 16
25 H 0.04 1.94 8.11 -2.39 -0.02 1.92 16
26 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16
27 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16
28 H 0.09 2.64 8.13 -2.38 -0.02 2.62 16
29 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16
30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16
31 H 0.04 1.31 7.60 -2.39 -0.02 1.29 16
32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16
33 H 0.12 0.88 7.91 -2.39 -0.02 0.86 16
34 H 0.12 0.96 7.90 -2.38 -0.02 0.94 16
35 H 0.12 0.61 8.14 -2.39 -0.02 0.60 16
36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16
37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
38 H 0.05 1.12 7.92 -2.39 -0.02 1.11 16
39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16
Total: -1.00 -78.44 326.30 5.77 -72.67
By element:
Atomic # 1 Polarization: 7.11 SS G_CDS: 1.03 Total: 8.14 kcal
Atomic # 6 Polarization: 4.00 SS G_CDS: 5.47 Total: 9.47 kcal
Atomic # 7 Polarization: -66.52 SS G_CDS: -2.57 Total: -69.09 kcal
Atomic # 8 Polarization: -68.03 SS G_CDS: -0.19 Total: -68.22 kcal
Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal
Total: -78.44 5.77 -72.67 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000870518026.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.468 kcal
(2) G-P(sol) polarization free energy of solvation -78.439 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.906 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) -148.138 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds