Wall clock time and date at job start Mon Mar 30 2020 01:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47124 * 2 1 4 4 C 1.50703 * 109.46961 * 119.99861 * 2 1 3 5 5 H 1.07993 * 119.99797 * 120.00173 * 4 2 1 6 6 C 1.37872 * 119.99842 * 299.99969 * 4 2 1 7 7 N 1.31516 * 120.00172 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99945 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47019 * 89.99725 * 8 6 4 10 10 H 1.48495 * 109.47390 * 210.00165 * 8 6 4 11 11 H 1.48507 * 109.46987 * 330.00050 * 8 6 4 12 12 C 1.50701 * 109.47132 * 239.99852 * 2 1 3 13 13 O 1.20820 * 119.99987 * 239.99969 * 12 2 1 14 14 O 1.34225 * 119.99885 * 60.00104 * 12 2 1 15 15 C 1.45199 * 117.00030 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47310 * 179.97438 * 15 14 12 17 17 C 1.53003 * 110.43494 * 302.54305 * 16 15 14 18 18 C 1.54627 * 110.48869 * 180.02562 * 16 15 14 19 19 C 1.54482 * 101.76258 * 265.99062 * 18 16 15 20 20 N 1.46763 * 105.47085 * 334.57759 * 19 18 16 21 21 C 1.46506 * 124.34806 * 197.01692 * 20 19 18 22 22 C 1.34415 * 111.29895 * 17.28672 * 20 19 18 23 23 O 1.21288 * 124.94000 * 179.30139 * 22 20 19 24 24 H 1.09000 * 109.47427 * 299.99719 * 1 2 3 25 25 H 1.08995 * 109.47302 * 60.00458 * 1 2 3 26 26 H 1.09002 * 109.47124 * 180.02562 * 1 2 3 27 27 H 0.97006 * 119.99603 * 179.97438 * 7 6 4 28 28 H 1.09008 * 109.46897 * 59.99966 * 15 14 12 29 29 H 1.09001 * 109.46979 * 299.99995 * 15 14 12 30 30 H 1.09000 * 109.47219 * 297.45635 * 17 16 15 31 31 H 1.08993 * 109.47229 * 57.45666 * 17 16 15 32 32 H 1.08996 * 109.47400 * 177.46015 * 17 16 15 33 33 H 1.08995 * 110.97572 * 147.86561 * 18 16 15 34 34 H 1.09005 * 111.00408 * 24.11779 * 18 16 15 35 35 H 1.08999 * 110.24408 * 215.58510 * 19 18 16 36 36 H 1.08991 * 110.25280 * 93.58277 * 19 18 16 37 37 H 1.08999 * 109.46892 * 90.00728 * 21 20 19 38 38 H 1.09000 * 109.46803 * 209.99902 * 21 20 19 39 39 H 1.09000 * 109.47214 * 330.00695 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4879 -2.5653 3.7123 12 6 2.0323 -0.7104 -1.2305 13 8 2.7270 -1.6928 -1.1196 14 8 1.7081 -0.2519 -2.4495 15 6 2.2277 -0.9857 -3.5896 16 6 1.7556 -0.3193 -4.8834 17 6 0.2275 -0.2529 -4.9233 18 6 2.2959 -1.0835 -6.1142 19 6 3.5888 -0.2990 -6.4294 20 7 3.3698 1.0488 -5.8915 21 6 4.1615 2.2249 -6.2608 22 6 2.3534 1.0644 -5.0120 23 8 1.9698 2.0455 -4.4110 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7081 1.1609 3.4844 28 1 1.8642 -2.0129 -3.5568 29 1 3.3172 -0.9846 -3.5565 30 1 -0.1803 -1.2637 -4.9201 31 1 -0.1356 0.2881 -4.0496 32 1 -0.0902 0.2641 -5.8287 33 1 1.5939 -1.0292 -6.9463 34 1 2.5202 -2.1202 -5.8629 35 1 3.7493 -0.2536 -7.5066 36 1 4.4427 -0.7666 -5.9395 37 1 3.7033 2.7164 -7.1191 38 1 4.1955 2.9184 -5.4206 39 1 5.1745 1.9151 -6.5176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870518026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:18 Heat of formation + Delta-G solvation = -148.138435 kcal Electronic energy + Delta-G solvation = -21393.911671 eV Core-core repulsion = 18107.639654 eV Total energy + Delta-G solvation = -3286.272017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.01027 -41.07016 -37.81178 -37.37529 -35.93727 -35.23763 -32.67581 -30.57161 -28.21619 -27.90806 -27.29708 -25.51217 -24.49943 -22.22599 -21.57486 -20.04755 -18.67164 -18.06560 -17.91726 -17.48927 -17.27870 -16.89948 -16.23328 -15.96625 -15.15355 -14.94971 -14.84808 -14.71301 -14.28090 -14.01372 -13.76048 -13.46506 -13.37691 -13.13686 -13.09467 -12.98277 -12.77792 -12.63756 -12.51741 -12.32085 -12.09925 -12.06633 -11.99858 -11.58256 -11.13501 -11.03992 -10.69166 -10.55302 -9.72200 -8.20718 -6.35465 1.39609 1.41415 1.43166 1.47496 1.54325 1.87781 2.04280 2.43019 3.08793 3.19444 3.45075 3.60669 3.90613 3.95882 4.18948 4.28549 4.33329 4.41082 4.48066 4.61913 4.65326 4.69645 4.77910 4.82515 4.82907 4.88206 4.96038 5.04835 5.10656 5.27651 5.35631 5.44962 5.59721 5.66554 5.85944 6.05060 6.07262 6.71353 7.02357 7.14293 7.33542 8.86138 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.004428 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.059872 B = 6321.173226 C = 6354.695127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.048 3.952 3 H 0.038 0.962 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.969 3.031 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.272 1.272 12 C 0.474 3.526 13 O -0.540 6.540 14 O -0.358 6.358 15 C 0.075 3.925 16 C -0.092 4.092 17 C -0.127 4.127 18 C -0.110 4.110 19 C 0.095 3.905 20 N -0.628 5.628 21 C 0.091 3.909 22 C 0.507 3.493 23 O -0.567 6.567 24 H 0.076 0.924 25 H 0.041 0.959 26 H 0.034 0.966 27 H 0.268 0.732 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.372 -3.669 -22.357 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.029 3.971 3 H 0.056 0.944 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.196 1.196 12 C 0.319 3.681 13 O -0.430 6.430 14 O -0.275 6.275 15 C 0.001 3.999 16 C -0.096 4.096 17 C -0.184 4.184 18 C -0.148 4.148 19 C -0.026 4.026 20 N -0.362 5.362 21 C -0.051 4.051 22 C 0.294 3.706 23 O -0.445 6.445 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.368 -3.253 -21.968 22.461 hybrid contribution 0.473 0.015 1.127 1.222 sum 3.840 -3.238 -20.841 21.438 Atomic orbital electron populations 1.21519 0.94305 1.00011 1.01652 1.18660 0.96072 0.95689 0.86658 0.94421 1.21246 1.32722 1.13315 0.90315 0.92239 1.25734 0.94835 0.95665 1.01824 1.69995 1.36649 1.23565 1.24777 0.85391 0.78294 0.78805 0.78179 1.19903 1.19757 1.19631 1.24752 0.76059 0.82455 0.84808 1.90450 1.37441 1.27646 1.87489 1.86672 1.69754 1.55881 1.15177 1.23070 0.98564 0.95971 0.82294 1.21549 0.99246 0.93481 0.95332 1.21640 0.90688 1.03716 1.02386 1.22841 0.96820 1.00320 0.94782 1.22458 0.98557 0.79881 1.01748 1.48417 1.32992 1.11507 1.43309 1.21691 0.96327 0.86516 1.00523 1.21203 0.80570 0.90582 0.78219 1.90705 1.65167 1.39838 1.48809 0.90485 0.93967 0.94666 0.92253 0.88776 0.91952 0.89153 0.94062 0.90803 0.86412 0.86343 0.86456 0.90135 0.91096 0.93337 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.90 71.98 0.64 -5.30 16 2 C 0.05 2.68 2.74 -12.28 -0.03 2.64 16 3 H 0.04 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.54 -31.90 8.37 25.60 0.21 -31.68 16 5 H 0.06 3.64 6.76 -2.91 -0.02 3.62 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -52.94 11.32 21.45 0.24 -52.70 16 8 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.47 23.89 7.25 71.24 0.52 24.41 16 13 O -0.54 -28.55 15.21 21.98 0.33 -28.22 16 14 O -0.36 -15.55 9.17 -51.37 -0.47 -16.02 16 15 C 0.08 2.38 4.29 71.98 0.31 2.69 16 16 C -0.09 -2.27 0.72 -52.19 -0.04 -2.31 16 17 C -0.13 -3.03 8.29 71.98 0.60 -2.44 16 18 C -0.11 -1.33 6.23 31.65 0.20 -1.13 16 19 C 0.09 1.13 7.35 86.83 0.64 1.77 16 20 N -0.63 -13.58 3.33 -842.89 -2.81 -16.39 16 21 C 0.09 1.59 10.97 127.77 1.40 3.00 16 22 C 0.51 15.72 6.59 87.90 0.58 16.30 16 23 O -0.57 -23.93 17.42 -3.05 -0.05 -23.98 16 24 H 0.08 4.20 6.07 -2.39 -0.01 4.18 16 25 H 0.04 1.94 8.11 -2.39 -0.02 1.92 16 26 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 28 H 0.09 2.64 8.13 -2.38 -0.02 2.62 16 29 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.04 1.31 7.60 -2.39 -0.02 1.29 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.12 0.88 7.91 -2.39 -0.02 0.86 16 34 H 0.12 0.96 7.90 -2.38 -0.02 0.94 16 35 H 0.12 0.61 8.14 -2.39 -0.02 0.60 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.12 7.92 -2.39 -0.02 1.11 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -78.44 326.30 5.77 -72.67 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.03 Total: 8.14 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 5.47 Total: 9.47 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -2.57 Total: -69.09 kcal Atomic # 8 Polarization: -68.03 SS G_CDS: -0.19 Total: -68.22 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -78.44 5.77 -72.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870518026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.468 kcal (2) G-P(sol) polarization free energy of solvation -78.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds