Wall clock time and date at job start Mon Mar 30 2020 01:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 O 1.20826 * 119.99685 * 239.99829 * 12 2 1 14 14 O 1.34228 * 120.00400 * 59.99268 * 12 2 1 15 15 C 1.45203 * 117.00192 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47182 * 180.02562 * 15 14 12 17 17 C 1.53009 * 110.43277 * 59.30231 * 16 15 14 18 18 C 1.54621 * 110.48826 * 181.84200 * 16 15 14 19 19 C 1.54686 * 101.66925 * 143.39602 * 18 16 15 20 20 N 1.46768 * 105.53425 * 334.73852 * 19 18 16 21 21 C 1.46495 * 124.34926 * 196.89636 * 20 19 18 22 22 C 1.34419 * 111.29689 * 16.92893 * 20 19 18 23 23 O 1.21288 * 124.93761 * 179.55281 * 22 20 19 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47280 * 300.00316 * 15 14 12 29 29 H 1.09005 * 109.46608 * 60.00688 * 15 14 12 30 30 H 1.08993 * 109.46955 * 60.70173 * 17 16 15 31 31 H 1.08997 * 109.46725 * 180.70002 * 17 16 15 32 32 H 1.09002 * 109.46793 * 300.69754 * 17 16 15 33 33 H 1.09001 * 110.97058 * 261.59735 * 18 16 15 34 34 H 1.09002 * 110.97001 * 25.35774 * 18 16 15 35 35 H 1.09007 * 110.29709 * 215.68385 * 19 18 16 36 36 H 1.08999 * 110.13908 * 93.72118 * 19 18 16 37 37 H 1.08998 * 109.47198 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.47661 * 300.00858 * 21 20 19 39 39 H 1.09006 * 109.46831 * 60.00890 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6926 -1.1197 14 8 1.7081 -0.2517 -2.4496 15 6 2.2278 -0.9855 -3.5897 16 6 1.7566 -0.3183 -4.8835 17 6 2.2410 1.1318 -4.9438 18 6 2.2591 -1.1083 -6.1140 19 6 1.0620 -0.9712 -7.0840 20 7 -0.1118 -0.7508 -6.2311 21 6 -1.4983 -0.9156 -6.6743 22 6 0.2488 -0.3776 -4.9911 23 8 -0.5225 -0.1247 -4.0899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7094 1.1615 3.4845 28 1 3.3173 -0.9843 -3.5567 29 1 1.8643 -2.0126 -3.5570 30 1 3.3306 1.1520 -4.9229 31 1 1.8866 1.5952 -5.8645 32 1 1.8509 1.6811 -4.0870 33 1 3.1563 -0.6512 -6.5312 34 1 2.4374 -2.1533 -5.8604 35 1 0.9396 -1.8853 -7.6651 36 1 1.2119 -0.1191 -7.7470 37 1 -2.1731 -0.6902 -5.8485 38 1 -1.6983 -0.2358 -7.5025 39 1 -1.6553 -1.9434 -7.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870518029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:19 Heat of formation + Delta-G solvation = -147.157468 kcal Electronic energy + Delta-G solvation = -21403.187391 eV Core-core repulsion = 18116.957912 eV Total energy + Delta-G solvation = -3286.229479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.96318 -41.04738 -37.73544 -37.41369 -35.93044 -35.17216 -32.66819 -30.49394 -28.24004 -27.89124 -27.30452 -25.60272 -24.39730 -22.21605 -21.51205 -20.03813 -18.60794 -18.03673 -17.74384 -17.50458 -17.24648 -16.93776 -16.43896 -15.84349 -15.17138 -14.99246 -14.83940 -14.64525 -14.21612 -13.86208 -13.61717 -13.51924 -13.32831 -13.19307 -13.00726 -12.93703 -12.84392 -12.78246 -12.61628 -12.31885 -12.09717 -12.03613 -11.87125 -11.59357 -11.13549 -11.01694 -10.65271 -10.54301 -9.68398 -8.20372 -6.34715 1.40488 1.42066 1.44661 1.50665 1.54723 1.93093 2.06687 2.43665 3.09003 3.22895 3.35244 3.70424 3.92243 3.98738 4.21943 4.27680 4.35477 4.41584 4.50941 4.63589 4.65816 4.69175 4.76908 4.83334 4.86011 4.88247 4.98271 5.05340 5.08828 5.27945 5.34999 5.47012 5.62381 5.66505 5.84214 6.07129 6.07794 6.71797 7.05631 7.18771 7.33972 8.86659 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035922 B = 0.004410 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.277605 B = 6347.485551 C = 6669.184653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.051 3.949 3 H 0.049 0.951 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.969 3.031 9 H -0.269 1.269 10 H -0.273 1.273 11 H -0.275 1.275 12 C 0.472 3.528 13 O -0.545 6.545 14 O -0.350 6.350 15 C 0.075 3.925 16 C -0.092 4.092 17 C -0.126 4.126 18 C -0.114 4.114 19 C 0.103 3.897 20 N -0.628 5.628 21 C 0.089 3.911 22 C 0.505 3.495 23 O -0.563 6.563 24 H 0.021 0.979 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.132 0.868 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 -1.768 -24.177 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.032 3.968 3 H 0.067 0.933 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.793 3.207 9 H -0.194 1.194 10 H -0.198 1.198 11 H -0.200 1.200 12 C 0.317 3.683 13 O -0.435 6.435 14 O -0.266 6.266 15 C 0.000 4.000 16 C -0.096 4.096 17 C -0.183 4.183 18 C -0.151 4.151 19 C -0.018 4.018 20 N -0.362 5.362 21 C -0.052 4.052 22 C 0.292 3.708 23 O -0.441 6.441 24 H 0.041 0.959 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.150 0.850 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.922 -1.824 -23.641 23.730 hybrid contribution -0.014 -0.477 1.135 1.232 sum 0.908 -2.301 -22.506 22.642 Atomic orbital electron populations 1.21481 0.95031 0.99281 1.01362 1.18639 0.95330 0.96205 0.86614 0.93330 1.21248 1.32684 1.13326 0.90384 0.92379 1.25730 0.94813 0.95691 1.01784 1.69992 1.36636 1.23552 1.24774 0.85389 0.78451 0.78671 0.78140 1.19448 1.19836 1.19979 1.24787 0.75837 0.82603 0.85028 1.90445 1.37763 1.27734 1.87586 1.86677 1.69730 1.55302 1.14922 1.23068 0.99545 0.94487 0.82875 1.21590 0.92765 1.00277 0.94966 1.21666 1.02822 0.91238 1.02616 1.22883 0.99767 1.01311 0.91162 1.22421 0.82148 1.04418 0.92816 1.48380 1.08573 1.67609 1.11656 1.21692 0.79901 1.03086 1.00551 1.21213 0.91420 0.75770 0.82417 1.90754 1.59266 1.50755 1.43341 0.95934 0.90266 0.94510 0.92232 0.89220 0.92837 0.88965 0.89845 0.94199 0.84964 0.89084 0.87460 0.88346 0.92737 0.89564 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.18 8.90 71.98 0.64 -5.54 16 2 C 0.05 2.88 2.74 -12.29 -0.03 2.85 16 3 H 0.05 2.83 8.14 -2.39 -0.02 2.81 16 4 C -0.54 -32.43 8.37 25.60 0.21 -32.22 16 5 H 0.06 3.63 6.76 -2.91 -0.02 3.61 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -53.28 11.32 21.45 0.24 -53.04 16 8 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 12 C 0.47 24.52 7.25 71.23 0.52 25.03 16 13 O -0.54 -29.82 15.21 21.97 0.33 -29.49 16 14 O -0.35 -15.65 8.53 -46.55 -0.40 -16.05 16 15 C 0.07 2.49 4.29 71.98 0.31 2.80 16 16 C -0.09 -2.25 0.72 -52.19 -0.04 -2.29 16 17 C -0.13 -2.75 8.37 71.99 0.60 -2.15 16 18 C -0.11 -1.39 6.25 31.72 0.20 -1.20 16 19 C 0.10 1.05 7.35 86.90 0.64 1.69 16 20 N -0.63 -12.80 3.33 -842.47 -2.81 -15.60 16 21 C 0.09 1.47 11.14 127.77 1.42 2.89 16 22 C 0.50 15.47 6.76 87.90 0.59 16.06 16 23 O -0.56 -24.09 16.38 9.85 0.16 -23.93 16 24 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 4.51 6.07 -2.39 -0.01 4.49 16 26 H 0.04 1.88 8.11 -2.39 -0.02 1.86 16 27 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 28 H 0.09 2.67 8.13 -2.39 -0.02 2.65 16 29 H 0.05 1.86 8.13 -2.38 -0.02 1.84 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.18 7.71 -2.39 -0.02 1.16 16 33 H 0.13 0.76 7.90 -2.39 -0.02 0.74 16 34 H 0.09 1.08 7.91 -2.39 -0.02 1.06 16 35 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.05 1.23 7.53 -2.39 -0.02 1.21 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -79.91 324.79 6.10 -73.80 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.03 Total: 7.25 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 5.52 Total: 9.51 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -2.57 Total: -68.64 kcal Atomic # 8 Polarization: -69.57 SS G_CDS: 0.10 Total: -69.47 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -79.91 6.10 -73.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870518029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.354 kcal (2) G-P(sol) polarization free energy of solvation -79.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds