Wall clock time and date at job start Mon Mar 30 2020 01:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47099 * 2 1 4 4 C 1.50695 * 109.47122 * 239.99923 * 2 1 3 5 5 H 1.08002 * 120.00017 * 275.10226 * 4 2 1 6 6 C 1.37881 * 120.00153 * 95.10223 * 4 2 1 7 7 N 1.31512 * 120.00118 * 184.91027 * 6 4 2 8 8 Si 1.86795 * 119.99835 * 4.91388 * 6 4 2 9 9 H 1.48504 * 109.47272 * 84.81920 * 8 6 4 10 10 H 1.48493 * 109.47311 * 204.82166 * 8 6 4 11 11 H 1.48509 * 109.47168 * 324.82252 * 8 6 4 12 12 C 1.50700 * 109.47184 * 120.00027 * 2 1 3 13 13 O 1.20832 * 120.00099 * 119.99843 * 12 2 1 14 14 O 1.34230 * 119.99832 * 300.27694 * 12 2 1 15 15 C 1.45206 * 117.00033 * 179.72487 * 14 12 2 16 16 C 1.52992 * 109.47288 * 179.97438 * 15 14 12 17 17 C 1.53004 * 110.43512 * 302.53749 * 16 15 14 18 18 C 1.54631 * 110.48928 * 179.97438 * 16 15 14 19 19 C 1.54476 * 101.76497 * 216.52342 * 18 16 15 20 20 N 1.46756 * 105.47635 * 25.41468 * 19 18 16 21 21 C 1.46502 * 124.35294 * 162.98035 * 20 19 18 22 22 C 1.34424 * 111.30088 * 342.98468 * 20 19 18 23 23 O 1.21284 * 124.94258 * 180.44375 * 22 20 19 24 24 H 1.08996 * 109.47357 * 175.06552 * 1 2 3 25 25 H 1.09000 * 109.47390 * 295.06435 * 1 2 3 26 26 H 1.08999 * 109.47243 * 55.06599 * 1 2 3 27 27 H 0.96995 * 120.00340 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47009 * 300.00081 * 15 14 12 29 29 H 1.09001 * 109.46908 * 59.99257 * 15 14 12 30 30 H 1.09008 * 109.46409 * 59.30151 * 17 16 15 31 31 H 1.08997 * 109.47547 * 179.29512 * 17 16 15 32 32 H 1.08998 * 109.47165 * 299.30134 * 17 16 15 33 33 H 1.09001 * 110.96514 * 334.64934 * 18 16 15 34 34 H 1.09005 * 110.96805 * 98.36444 * 18 16 15 35 35 H 1.09008 * 110.24240 * 144.41866 * 19 18 16 36 36 H 1.09003 * 110.24257 * 266.41281 * 19 18 16 37 37 H 1.08998 * 109.47138 * 89.99642 * 21 20 19 38 38 H 1.08993 * 109.47662 * 210.00343 * 21 20 19 39 39 H 1.09006 * 109.46827 * 330.00286 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1339 -1.7856 -1.2295 6 6 2.3622 0.0123 -2.3574 7 7 2.7080 -0.6128 -3.4615 8 14 2.3181 1.8792 -2.3157 9 1 3.6039 2.3929 -1.7787 10 1 2.1125 2.4004 -3.6909 11 1 1.2029 2.3288 -1.4441 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6929 1.1196 14 8 1.7034 -0.2550 2.4496 15 6 2.2179 -0.9926 3.5897 16 6 1.7421 -0.3288 4.8834 17 6 2.1888 1.1338 4.9289 18 6 2.2768 -1.0970 6.1143 19 6 1.0897 -0.9837 7.0963 20 7 -0.0989 -0.8028 6.2547 21 6 -1.4754 -1.0034 6.7141 22 6 0.2378 -0.4295 5.0080 23 8 -0.5499 -0.2053 4.1134 24 1 -0.3634 -1.0238 -0.0884 25 1 -0.3634 0.4353 0.9309 26 1 -0.3634 0.5885 -0.8425 27 1 2.9405 -0.1045 -4.2542 28 1 1.8537 -2.0193 3.5525 29 1 3.3075 -0.9924 3.5609 30 1 1.7759 1.6666 4.0722 31 1 1.8314 1.5945 5.8498 32 1 3.2772 1.1825 4.8969 33 1 2.4797 -2.1387 5.8659 34 1 3.1663 -0.6142 6.5192 35 1 0.9994 -1.8963 7.6856 36 1 1.2228 -0.1226 7.7512 37 1 -1.8665 -0.0663 7.1103 38 1 -2.0936 -1.3305 5.8781 39 1 -1.4905 -1.7628 7.4960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870518032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:22 Heat of formation + Delta-G solvation = -123.314061 kcal Electronic energy + Delta-G solvation = -21445.140294 eV Core-core repulsion = 18159.944742 eV Total energy + Delta-G solvation = -3285.195552 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91702 -39.35404 -36.53189 -35.92026 -34.11420 -33.68885 -31.28092 -29.74621 -27.14872 -27.06556 -25.19031 -24.53621 -22.64835 -21.35639 -19.50910 -19.00696 -17.17621 -16.72123 -16.50567 -16.16459 -15.83169 -15.53429 -14.95552 -14.24031 -14.16649 -13.77005 -13.60429 -13.18858 -12.94471 -12.67303 -12.55475 -12.36135 -12.31168 -12.20720 -12.02725 -11.89491 -11.27882 -11.15778 -11.04386 -10.92268 -10.69384 -10.29047 -10.02658 -9.79549 -9.53867 -9.15413 -9.08905 -8.87604 -8.57945 -6.08887 -4.09586 2.58323 2.83818 3.25251 3.32213 3.36956 3.37380 3.46697 4.12599 4.16101 4.38908 4.52796 4.72542 4.87182 5.00780 5.04666 5.16048 5.24567 5.28780 5.41858 5.50375 5.50618 5.58059 5.63673 5.71492 5.79311 6.06590 6.17921 6.30042 6.37433 6.61337 6.69710 6.93300 6.95322 7.22324 7.35814 7.58523 8.18713 8.45658 8.91231 9.04415 9.49453 11.03755 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.004714 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.092026 B = 5937.887437 C = 6077.266027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.026 3.974 3 H 0.063 0.937 4 C -0.503 4.503 5 H 0.087 0.913 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.869 3.131 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.260 1.260 12 C 0.464 3.536 13 O -0.508 6.508 14 O -0.351 6.351 15 C 0.085 3.915 16 C -0.093 4.093 17 C -0.129 4.129 18 C -0.125 4.125 19 C 0.107 3.893 20 N -0.633 5.633 21 C 0.098 3.902 22 C 0.523 3.477 23 O -0.497 6.497 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.266 0.734 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.989 2.179 24.447 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.006 3.994 3 H 0.081 0.919 4 C -0.541 4.541 5 H 0.105 0.895 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.696 3.304 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.185 1.185 12 C 0.307 3.693 13 O -0.394 6.394 14 O -0.269 6.269 15 C 0.009 3.991 16 C -0.096 4.096 17 C -0.186 4.186 18 C -0.163 4.163 19 C -0.016 4.016 20 N -0.369 5.369 21 C -0.044 4.044 22 C 0.309 3.691 23 O -0.370 6.370 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.239 1.997 23.761 24.063 hybrid contribution 0.171 0.729 0.108 0.756 sum -3.068 2.726 23.869 24.219 Atomic orbital electron populations 1.21894 0.95635 1.01405 1.00206 1.19154 0.94915 0.96901 0.88424 0.91892 1.20772 1.43810 0.96217 0.93273 0.89516 1.24985 0.94238 0.98258 0.95211 1.69873 1.45395 1.35881 1.01682 0.86973 0.79369 0.86378 0.77715 1.19903 1.21031 1.18482 1.25170 0.76864 0.83553 0.83714 1.90529 1.35762 1.26301 1.86775 1.86694 1.70169 1.55181 1.14879 1.22601 0.98718 0.94807 0.82937 1.21473 0.93917 0.99059 0.95199 1.21652 1.01831 0.92132 1.02991 1.22732 0.98090 1.01824 0.93671 1.22037 0.84172 1.01940 0.93465 1.48186 1.06762 1.69839 1.12136 1.21508 0.81351 1.01020 1.00523 1.20651 0.90627 0.76117 0.81715 1.90778 1.56342 1.48038 1.41800 0.93174 0.93777 0.92618 0.92374 0.91755 0.90721 0.90399 0.92390 0.91174 0.89460 0.88465 0.90322 0.91076 0.92786 0.90644 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.14 37.16 0.34 -2.72 16 2 C 0.03 0.65 2.40 -92.93 -0.22 0.43 16 3 H 0.06 1.54 5.29 -51.93 -0.27 1.27 16 4 C -0.50 -14.86 8.36 -34.44 -0.29 -15.15 16 5 H 0.09 2.87 7.62 -52.49 -0.40 2.47 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -27.62 13.96 55.43 0.77 -26.85 16 8 Si 0.87 21.35 26.99 -169.99 -4.59 16.76 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.26 -6.04 6.82 56.52 0.39 -5.65 16 12 C 0.46 11.24 7.25 36.01 0.26 11.50 16 13 O -0.51 -13.50 15.52 -18.75 -0.29 -13.79 16 14 O -0.35 -7.25 8.47 -43.87 -0.37 -7.62 16 15 C 0.08 1.37 4.28 37.15 0.16 1.52 16 16 C -0.09 -1.15 0.72 -154.52 -0.11 -1.26 16 17 C -0.13 -1.44 8.36 37.16 0.31 -1.13 16 18 C -0.13 -0.97 6.23 -25.10 -0.16 -1.12 16 19 C 0.11 0.74 7.35 -3.13 -0.02 0.71 16 20 N -0.63 -6.73 3.33 -180.29 -0.60 -7.33 16 21 C 0.10 0.83 10.96 59.85 0.66 1.49 16 22 C 0.52 7.67 6.77 -10.86 -0.07 7.59 16 23 O -0.50 -9.62 16.72 -5.92 -0.10 -9.72 16 24 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.04 0.94 7.99 -51.93 -0.41 0.52 16 26 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 29 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 30 H 0.08 1.08 7.66 -51.92 -0.40 0.68 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.65 7.91 -51.93 -0.41 0.24 16 34 H 0.10 0.53 7.90 -51.93 -0.41 0.12 16 35 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 325.31 15.07 4.90 4.90 Total: -1.00 -36.29 325.31 -5.62 -41.90 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -6.10 Total: -2.23 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 0.75 Total: 3.98 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.17 Total: -34.18 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.76 Total: -31.13 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.59 Total: 16.76 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.29 -5.62 -41.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870518032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.410 kcal (2) G-P(sol) polarization free energy of solvation -36.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds