Wall clock time and date at job start Mon Mar 30 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47099 * 2 1 4 4 C 1.50695 * 109.47122 * 239.99923 * 2 1 3 5 5 H 1.08002 * 120.00017 * 275.10226 * 4 2 1 6 6 C 1.37881 * 120.00153 * 95.10223 * 4 2 1 7 7 N 1.31512 * 120.00118 * 184.91027 * 6 4 2 8 8 Si 1.86795 * 119.99835 * 4.91388 * 6 4 2 9 9 H 1.48504 * 109.47272 * 84.81920 * 8 6 4 10 10 H 1.48493 * 109.47311 * 204.82166 * 8 6 4 11 11 H 1.48509 * 109.47168 * 324.82252 * 8 6 4 12 12 C 1.50700 * 109.47184 * 120.00027 * 2 1 3 13 13 O 1.20832 * 120.00099 * 119.99843 * 12 2 1 14 14 O 1.34230 * 119.99832 * 300.27694 * 12 2 1 15 15 C 1.45206 * 117.00033 * 179.72487 * 14 12 2 16 16 C 1.52992 * 109.47288 * 179.97438 * 15 14 12 17 17 C 1.53004 * 110.43512 * 302.53749 * 16 15 14 18 18 C 1.54631 * 110.48928 * 179.97438 * 16 15 14 19 19 C 1.54476 * 101.76497 * 216.52342 * 18 16 15 20 20 N 1.46756 * 105.47635 * 25.41468 * 19 18 16 21 21 C 1.46502 * 124.35294 * 162.98035 * 20 19 18 22 22 C 1.34424 * 111.30088 * 342.98468 * 20 19 18 23 23 O 1.21284 * 124.94258 * 180.44375 * 22 20 19 24 24 H 1.08996 * 109.47357 * 175.06552 * 1 2 3 25 25 H 1.09000 * 109.47390 * 295.06435 * 1 2 3 26 26 H 1.08999 * 109.47243 * 55.06599 * 1 2 3 27 27 H 0.96995 * 120.00340 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47009 * 300.00081 * 15 14 12 29 29 H 1.09001 * 109.46908 * 59.99257 * 15 14 12 30 30 H 1.09008 * 109.46409 * 59.30151 * 17 16 15 31 31 H 1.08997 * 109.47547 * 179.29512 * 17 16 15 32 32 H 1.08998 * 109.47165 * 299.30134 * 17 16 15 33 33 H 1.09001 * 110.96514 * 334.64934 * 18 16 15 34 34 H 1.09005 * 110.96805 * 98.36444 * 18 16 15 35 35 H 1.09008 * 110.24240 * 144.41866 * 19 18 16 36 36 H 1.09003 * 110.24257 * 266.41281 * 19 18 16 37 37 H 1.08998 * 109.47138 * 89.99642 * 21 20 19 38 38 H 1.08993 * 109.47662 * 210.00343 * 21 20 19 39 39 H 1.09006 * 109.46827 * 330.00286 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1339 -1.7856 -1.2295 6 6 2.3622 0.0123 -2.3574 7 7 2.7080 -0.6128 -3.4615 8 14 2.3181 1.8792 -2.3157 9 1 3.6039 2.3929 -1.7787 10 1 2.1125 2.4004 -3.6909 11 1 1.2029 2.3288 -1.4441 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6929 1.1196 14 8 1.7034 -0.2550 2.4496 15 6 2.2179 -0.9926 3.5897 16 6 1.7421 -0.3288 4.8834 17 6 2.1888 1.1338 4.9289 18 6 2.2768 -1.0970 6.1143 19 6 1.0897 -0.9837 7.0963 20 7 -0.0989 -0.8028 6.2547 21 6 -1.4754 -1.0034 6.7141 22 6 0.2378 -0.4295 5.0080 23 8 -0.5499 -0.2053 4.1134 24 1 -0.3634 -1.0238 -0.0884 25 1 -0.3634 0.4353 0.9309 26 1 -0.3634 0.5885 -0.8425 27 1 2.9405 -0.1045 -4.2542 28 1 1.8537 -2.0193 3.5525 29 1 3.3075 -0.9924 3.5609 30 1 1.7759 1.6666 4.0722 31 1 1.8314 1.5945 5.8498 32 1 3.2772 1.1825 4.8969 33 1 2.4797 -2.1387 5.8659 34 1 3.1663 -0.6142 6.5192 35 1 0.9994 -1.8963 7.6856 36 1 1.2228 -0.1226 7.7512 37 1 -1.8665 -0.0663 7.1103 38 1 -2.0936 -1.3305 5.8781 39 1 -1.4905 -1.7628 7.4960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870518032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:21 Heat of formation + Delta-G solvation = -148.301048 kcal Electronic energy + Delta-G solvation = -21446.223811 eV Core-core repulsion = 18159.944742 eV Total energy + Delta-G solvation = -3286.279069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.97190 -41.07379 -37.73859 -37.41984 -35.81482 -35.16989 -33.42655 -30.52009 -28.27807 -27.89273 -27.32688 -25.63842 -24.32551 -22.20927 -21.35848 -20.04062 -19.29060 -18.08701 -17.81786 -17.51691 -17.22265 -16.95472 -16.32555 -15.87257 -15.18295 -15.00679 -14.91869 -14.54727 -14.29723 -14.12022 -13.79260 -13.62916 -13.35326 -13.21464 -13.17260 -13.00007 -12.92605 -12.78684 -12.67577 -12.28102 -12.08983 -11.86529 -11.79470 -11.61592 -11.33346 -11.03242 -10.79359 -10.64114 -9.69042 -8.34318 -6.43568 1.33737 1.35980 1.42505 1.49274 1.50949 1.87848 2.06578 2.31471 3.01172 3.22152 3.35125 3.69930 3.91753 3.98682 4.19592 4.26698 4.29468 4.31541 4.40719 4.48409 4.64713 4.64952 4.69361 4.77523 4.83177 4.84122 4.86162 5.01446 5.06333 5.08704 5.28537 5.35344 5.42889 5.53126 5.62164 6.07624 6.19258 6.63951 7.02739 7.17829 7.20859 8.82665 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.004714 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.092026 B = 5937.887437 C = 6077.266027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.020 3.980 3 H 0.080 0.920 4 C -0.518 4.518 5 H 0.030 0.970 6 C 0.019 3.981 7 N -0.941 5.941 8 Si 0.941 3.059 9 H -0.261 1.261 10 H -0.276 1.276 11 H -0.234 1.234 12 C 0.468 3.532 13 O -0.542 6.542 14 O -0.348 6.348 15 C 0.075 3.925 16 C -0.092 4.092 17 C -0.126 4.126 18 C -0.116 4.116 19 C 0.103 3.897 20 N -0.628 5.628 21 C 0.092 3.908 22 C 0.506 3.494 23 O -0.562 6.562 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.272 0.728 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 4.195 27.950 28.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.001 3.999 3 H 0.098 0.902 4 C -0.555 4.555 5 H 0.048 0.952 6 C -0.180 4.180 7 N -0.579 5.579 8 Si 0.762 3.238 9 H -0.186 1.186 10 H -0.202 1.202 11 H -0.157 1.157 12 C 0.312 3.688 13 O -0.432 6.432 14 O -0.264 6.264 15 C 0.001 3.999 16 C -0.096 4.096 17 C -0.184 4.184 18 C -0.153 4.153 19 C -0.018 4.018 20 N -0.362 5.362 21 C -0.050 4.050 22 C 0.293 3.707 23 O -0.440 6.440 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.149 0.851 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.919 4.000 27.360 27.804 hybrid contribution 0.060 -0.039 -0.846 0.849 sum -2.859 3.961 26.514 26.960 Atomic orbital electron populations 1.21767 0.93806 1.01079 1.01485 1.19103 0.96226 0.97147 0.87445 0.90241 1.20779 1.44899 0.94022 0.95848 0.95158 1.25960 0.93276 1.04537 0.94190 1.70028 1.46619 1.38557 1.02709 0.85833 0.80747 0.78493 0.78697 1.18592 1.20165 1.15677 1.24808 0.76170 0.82843 0.84939 1.90508 1.37387 1.27731 1.87545 1.86647 1.69798 1.55249 1.14745 1.23051 0.99568 0.94435 0.82890 1.21588 0.92890 1.00333 0.94773 1.21668 1.02987 0.90902 1.02818 1.22854 0.99677 1.01595 0.91222 1.22404 0.81784 1.04638 0.92977 1.48388 1.08722 1.67659 1.11400 1.21683 0.80156 1.02670 1.00449 1.21157 0.91330 0.75805 0.82393 1.90730 1.57945 1.51234 1.44053 0.94384 0.92088 0.91578 0.91904 0.93008 0.89366 0.93696 0.89878 0.89144 0.89222 0.85094 0.87451 0.88348 0.91705 0.93121 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 9.14 71.98 0.66 -5.02 16 2 C 0.02 1.04 2.40 -12.29 -0.03 1.01 16 3 H 0.08 3.79 5.29 -2.39 -0.01 3.77 16 4 C -0.52 -31.80 8.36 25.60 0.21 -31.59 16 5 H 0.03 2.14 7.62 -2.91 -0.02 2.12 16 6 C 0.02 1.11 5.47 84.66 0.46 1.58 16 7 N -0.94 -60.13 13.96 21.45 0.30 -59.83 16 8 Si 0.94 43.52 26.99 68.60 1.85 45.37 16 9 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.23 -9.77 6.82 99.48 0.68 -9.09 16 12 C 0.47 23.24 7.25 71.24 0.52 23.76 16 13 O -0.54 -30.08 15.52 21.95 0.34 -29.74 16 14 O -0.35 -14.47 8.47 -47.01 -0.40 -14.87 16 15 C 0.07 2.39 4.28 71.98 0.31 2.70 16 16 C -0.09 -2.10 0.72 -52.19 -0.04 -2.14 16 17 C -0.13 -2.51 8.36 71.98 0.60 -1.90 16 18 C -0.12 -1.32 6.23 31.65 0.20 -1.12 16 19 C 0.10 0.93 7.35 86.83 0.64 1.57 16 20 N -0.63 -11.77 3.33 -842.90 -2.81 -14.58 16 21 C 0.09 1.37 10.96 127.77 1.40 2.77 16 22 C 0.51 14.42 6.77 87.90 0.59 15.01 16 23 O -0.56 -22.27 16.72 7.93 0.13 -22.14 16 24 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 2.58 7.99 -2.39 -0.02 2.56 16 26 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 27 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 28 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 29 H 0.09 2.55 8.13 -2.39 -0.02 2.53 16 30 H 0.04 1.19 7.66 -2.38 -0.02 1.17 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.02 7.91 -2.39 -0.02 1.00 16 34 H 0.13 0.68 7.90 -2.38 -0.02 0.66 16 35 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 38 H 0.05 1.02 7.93 -2.39 -0.02 1.00 16 39 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -85.24 325.31 5.94 -79.30 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.00 Total: 9.88 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 5.52 Total: 6.62 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -2.51 Total: -74.41 kcal Atomic # 8 Polarization: -66.83 SS G_CDS: 0.08 Total: -66.75 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.85 Total: 45.37 kcal Total: -85.24 5.94 -79.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870518032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.004 kcal (2) G-P(sol) polarization free energy of solvation -85.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds