Wall clock time and date at job start Mon Mar 30 2020 01:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46817 * 2 1 4 4 C 1.52998 * 109.47058 * 120.00410 * 2 1 3 5 5 N 1.46506 * 109.46904 * 184.99859 * 4 2 1 6 6 C 1.46760 * 124.34669 * 89.99982 * 5 4 2 7 7 C 1.54480 * 105.54782 * 162.91674 * 6 5 4 8 8 C 1.54861 * 101.66110 * 25.43666 * 7 6 5 9 9 C 1.34415 * 124.35027 * 269.97473 * 5 4 2 10 10 O 1.21288 * 124.94382 * 0.45207 * 9 5 4 11 11 O 1.45208 * 109.46815 * 240.00383 * 2 1 3 12 12 C 1.34230 * 116.99619 * 90.00036 * 11 2 1 13 13 O 1.20821 * 120.00667 * 0.02562 * 12 11 2 14 14 C 1.50701 * 119.99640 * 179.97438 * 12 11 2 15 15 H 1.09008 * 109.46977 * 300.00294 * 14 12 11 16 16 C 1.53001 * 109.47017 * 60.00036 * 14 12 11 17 17 C 1.50697 * 109.47395 * 180.02562 * 14 12 11 18 18 H 1.08006 * 119.99627 * 359.97438 * 17 14 12 19 19 C 1.37873 * 120.00378 * 179.97438 * 17 14 12 20 20 N 1.31523 * 119.99973 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00096 * 179.97438 * 19 17 14 22 22 H 1.48494 * 109.46891 * 60.00584 * 21 19 17 23 23 H 1.48503 * 109.46803 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47336 * 300.00106 * 21 19 17 25 25 H 1.08996 * 109.47357 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47227 * 299.99551 * 1 2 3 27 27 H 1.09009 * 109.47188 * 59.99977 * 1 2 3 28 28 H 1.09003 * 109.46934 * 64.99984 * 4 2 1 29 29 H 1.08995 * 109.47116 * 304.99725 * 4 2 1 30 30 H 1.09002 * 110.24740 * 281.96247 * 6 5 4 31 31 H 1.09002 * 110.24616 * 43.87772 * 6 5 4 32 32 H 1.08997 * 110.97017 * 143.57782 * 7 6 5 33 33 H 1.09000 * 110.97126 * 267.34164 * 7 6 5 34 34 H 1.08998 * 110.46775 * 216.51886 * 8 7 6 35 35 H 1.08993 * 110.60550 * 93.93039 * 8 7 6 36 36 H 1.08991 * 109.47260 * 60.00274 * 16 14 12 37 37 H 1.09002 * 109.47146 * 180.02562 * 16 14 12 38 38 H 1.09002 * 109.47170 * 299.99529 * 16 14 12 39 39 H 0.97000 * 119.99833 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.6180 1.3108 6 6 4.2258 0.4682 1.9798 7 6 5.6676 -0.0528 2.1700 8 6 5.7780 -1.0925 1.0277 9 6 4.3471 -1.5060 0.7624 10 8 4.0129 -2.4946 0.1444 11 8 2.0140 -0.6845 -1.1857 12 6 2.2170 0.0642 -2.2812 13 8 1.9982 1.2520 -2.2504 14 6 2.7192 -0.5768 -3.5493 15 1 3.6883 -1.0398 -3.3633 16 6 1.7241 -1.6438 -4.0100 17 6 2.8621 0.4734 -4.6205 18 1 2.6137 1.5022 -4.4048 19 6 3.3099 0.1211 -5.8760 20 7 3.6119 -1.1317 -6.1389 21 14 3.4863 1.4229 -7.2041 22 1 4.4516 2.4588 -6.7566 23 1 3.9824 0.7914 -8.4533 24 1 2.1660 2.0532 -7.4580 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8901 28 1 1.7516 -1.7716 1.2054 29 1 1.6054 -0.2619 2.1369 30 1 4.2268 1.3617 1.3555 31 1 3.7724 0.6850 2.9470 32 1 6.3929 0.7503 2.0396 33 1 5.7852 -0.5283 3.1437 34 1 6.3695 -1.9500 1.3486 35 1 6.2154 -0.6398 0.1379 36 1 0.7551 -1.1809 -4.1960 37 1 2.0875 -2.1078 -4.9270 38 1 1.6213 -2.4035 -3.2351 39 1 3.9273 -1.3794 -7.0221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870748185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:18 Heat of formation + Delta-G solvation = -129.880258 kcal Electronic energy + Delta-G solvation = -21625.198370 eV Core-core repulsion = 18339.718086 eV Total energy + Delta-G solvation = -3285.480283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.32905 -39.40500 -36.37447 -35.91368 -33.80696 -33.41784 -31.05106 -30.29114 -27.54171 -26.26046 -25.12974 -23.52872 -22.04376 -21.28656 -19.54937 -19.32226 -16.79954 -16.71828 -16.61936 -16.00294 -15.52057 -15.12541 -14.96017 -14.30003 -13.70514 -13.60179 -13.51559 -13.19008 -12.88720 -12.73926 -12.45053 -12.32259 -12.09655 -11.79407 -11.52737 -11.41816 -11.07999 -10.99692 -10.77729 -10.75886 -10.61529 -10.27526 -10.00975 -9.97305 -9.54665 -9.03389 -8.96702 -8.60275 -8.38207 -6.03664 -4.09550 2.82366 3.03380 3.34802 3.37631 3.40791 3.41700 3.60975 4.38036 4.39091 4.45716 4.69454 4.91826 5.00006 5.17159 5.21624 5.28552 5.29602 5.36539 5.50520 5.58767 5.61115 5.69222 5.76770 5.88707 6.01746 6.19227 6.38365 6.61121 6.77355 6.99221 7.00301 7.22940 7.36388 7.54242 7.82042 8.02044 8.22388 8.39112 8.93777 9.02044 9.55258 11.03585 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.005586 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.847685 B = 5011.512172 C = 5454.818644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.059 3.941 3 H 0.079 0.921 4 C 0.134 3.866 5 N -0.624 5.624 6 C 0.101 3.899 7 C -0.130 4.130 8 C -0.157 4.157 9 C 0.516 3.484 10 O -0.508 6.508 11 O -0.345 6.345 12 C 0.466 3.534 13 O -0.524 6.524 14 C 0.058 3.942 15 H 0.062 0.938 16 C -0.131 4.131 17 C -0.512 4.512 18 H 0.073 0.927 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.904 3.096 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.029 0.971 37 H 0.095 0.905 38 H 0.024 0.976 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 1.532 18.362 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.002 3.998 3 H 0.097 0.903 4 C 0.011 3.989 5 N -0.359 5.359 6 C -0.023 4.023 7 C -0.168 4.168 8 C -0.198 4.198 9 C 0.303 3.697 10 O -0.382 6.382 11 O -0.263 6.263 12 C 0.311 3.689 13 O -0.411 6.411 14 C 0.040 3.960 15 H 0.079 0.921 16 C -0.189 4.189 17 C -0.550 4.550 18 H 0.092 0.908 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.048 0.952 37 H 0.113 0.887 38 H 0.043 0.957 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.474 1.221 17.910 17.958 hybrid contribution -0.003 0.978 -0.675 1.188 sum 0.472 2.198 17.235 17.381 Atomic orbital electron populations 1.22106 0.94362 1.02952 1.02862 1.22964 0.94321 0.97610 0.84880 0.90264 1.21510 0.78622 1.02787 0.95943 1.48194 1.05828 1.25576 1.56320 1.22072 0.92246 0.90452 0.97485 1.22602 0.96102 0.99191 0.98874 1.22390 0.95620 1.00976 1.00777 1.20836 0.88303 0.82594 0.77974 1.90775 1.81769 1.26732 1.38936 1.86808 1.77175 1.42388 1.19912 1.25329 0.72518 0.86138 0.84939 1.90457 1.49080 1.17594 1.84016 1.18707 0.96645 0.95765 0.84930 0.92056 1.21698 0.97510 0.97240 1.02460 1.21090 1.44694 0.94560 0.94665 0.90847 1.24945 0.95009 0.95678 0.98391 1.69894 1.44685 1.16213 1.22158 0.86452 0.78612 0.81357 0.80391 1.20173 1.21202 1.20127 0.91534 0.91403 0.91480 0.88998 0.88978 0.91196 0.90554 0.89254 0.90146 0.88233 0.87641 0.95218 0.88694 0.95670 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.55 37.16 0.35 -1.92 16 2 C 0.06 0.96 2.80 -26.73 -0.07 0.89 16 3 H 0.08 1.37 7.16 -51.93 -0.37 1.00 16 4 C 0.13 1.72 5.62 -4.04 -0.02 1.70 16 5 N -0.62 -8.37 2.90 -172.41 -0.50 -8.87 16 6 C 0.10 0.94 7.34 -3.12 -0.02 0.92 16 7 C -0.13 -1.02 7.20 -24.97 -0.18 -1.20 16 8 C -0.16 -1.79 6.87 -26.62 -0.18 -1.98 16 9 C 0.52 8.28 7.73 -10.86 -0.08 8.20 16 10 O -0.51 -10.60 17.44 5.55 0.10 -10.50 16 11 O -0.35 -7.45 9.29 -39.28 -0.37 -7.81 16 12 C 0.47 11.59 7.22 36.01 0.26 11.85 16 13 O -0.52 -13.71 14.68 -18.75 -0.28 -13.99 16 14 C 0.06 1.59 2.74 -92.92 -0.25 1.34 16 15 H 0.06 1.77 8.14 -51.92 -0.42 1.35 16 16 C -0.13 -3.36 8.90 37.16 0.33 -3.03 16 17 C -0.51 -14.95 8.37 -34.44 -0.29 -15.24 16 18 H 0.07 2.21 6.76 -52.48 -0.35 1.86 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.81 11.32 55.43 0.63 -25.18 16 21 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 28 H 0.09 1.28 7.93 -51.93 -0.41 0.86 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 2.59 6.07 -51.93 -0.32 2.27 16 38 H 0.02 0.58 8.11 -51.93 -0.42 0.16 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 328.18 15.07 4.95 4.95 Total: -1.00 -34.88 328.18 -6.83 -41.71 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.08 Total: -0.50 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.26 Total: 3.19 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.13 Total: -34.05 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.54 Total: -32.30 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.88 -6.83 -41.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870748185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.166 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds