Wall clock time and date at job start Mon Mar 30 2020 01:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46817 * 2 1 4 4 C 1.52998 * 109.47058 * 120.00410 * 2 1 3 5 5 N 1.46506 * 109.46904 * 184.99859 * 4 2 1 6 6 C 1.46760 * 124.34669 * 89.99982 * 5 4 2 7 7 C 1.54480 * 105.54782 * 162.91674 * 6 5 4 8 8 C 1.54861 * 101.66110 * 25.43666 * 7 6 5 9 9 C 1.34415 * 124.35027 * 269.97473 * 5 4 2 10 10 O 1.21288 * 124.94382 * 0.45207 * 9 5 4 11 11 O 1.45208 * 109.46815 * 240.00383 * 2 1 3 12 12 C 1.34230 * 116.99619 * 90.00036 * 11 2 1 13 13 O 1.20821 * 120.00667 * 0.02562 * 12 11 2 14 14 C 1.50701 * 119.99640 * 179.97438 * 12 11 2 15 15 H 1.09008 * 109.46977 * 300.00294 * 14 12 11 16 16 C 1.53001 * 109.47017 * 60.00036 * 14 12 11 17 17 C 1.50697 * 109.47395 * 180.02562 * 14 12 11 18 18 H 1.08006 * 119.99627 * 359.97438 * 17 14 12 19 19 C 1.37873 * 120.00378 * 179.97438 * 17 14 12 20 20 N 1.31523 * 119.99973 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00096 * 179.97438 * 19 17 14 22 22 H 1.48494 * 109.46891 * 60.00584 * 21 19 17 23 23 H 1.48503 * 109.46803 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47336 * 300.00106 * 21 19 17 25 25 H 1.08996 * 109.47357 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47227 * 299.99551 * 1 2 3 27 27 H 1.09009 * 109.47188 * 59.99977 * 1 2 3 28 28 H 1.09003 * 109.46934 * 64.99984 * 4 2 1 29 29 H 1.08995 * 109.47116 * 304.99725 * 4 2 1 30 30 H 1.09002 * 110.24740 * 281.96247 * 6 5 4 31 31 H 1.09002 * 110.24616 * 43.87772 * 6 5 4 32 32 H 1.08997 * 110.97017 * 143.57782 * 7 6 5 33 33 H 1.09000 * 110.97126 * 267.34164 * 7 6 5 34 34 H 1.08998 * 110.46775 * 216.51886 * 8 7 6 35 35 H 1.08993 * 110.60550 * 93.93039 * 8 7 6 36 36 H 1.08991 * 109.47260 * 60.00274 * 16 14 12 37 37 H 1.09002 * 109.47146 * 180.02562 * 16 14 12 38 38 H 1.09002 * 109.47170 * 299.99529 * 16 14 12 39 39 H 0.97000 * 119.99833 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.6180 1.3108 6 6 4.2258 0.4682 1.9798 7 6 5.6676 -0.0528 2.1700 8 6 5.7780 -1.0925 1.0277 9 6 4.3471 -1.5060 0.7624 10 8 4.0129 -2.4946 0.1444 11 8 2.0140 -0.6845 -1.1857 12 6 2.2170 0.0642 -2.2812 13 8 1.9982 1.2520 -2.2504 14 6 2.7192 -0.5768 -3.5493 15 1 3.6883 -1.0398 -3.3633 16 6 1.7241 -1.6438 -4.0100 17 6 2.8621 0.4734 -4.6205 18 1 2.6137 1.5022 -4.4048 19 6 3.3099 0.1211 -5.8760 20 7 3.6119 -1.1317 -6.1389 21 14 3.4863 1.4229 -7.2041 22 1 4.4516 2.4588 -6.7566 23 1 3.9824 0.7914 -8.4533 24 1 2.1660 2.0532 -7.4580 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8901 28 1 1.7516 -1.7716 1.2054 29 1 1.6054 -0.2619 2.1369 30 1 4.2268 1.3617 1.3555 31 1 3.7724 0.6850 2.9470 32 1 6.3929 0.7503 2.0396 33 1 5.7852 -0.5283 3.1437 34 1 6.3695 -1.9500 1.3486 35 1 6.2154 -0.6398 0.1379 36 1 0.7551 -1.1809 -4.1960 37 1 2.0875 -2.1078 -4.9270 38 1 1.6213 -2.4035 -3.2351 39 1 3.9273 -1.3794 -7.0221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870748185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:17 Heat of formation + Delta-G solvation = -152.320867 kcal Electronic energy + Delta-G solvation = -21626.171468 eV Core-core repulsion = 18339.718086 eV Total energy + Delta-G solvation = -3286.453381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65479 -40.99945 -37.92511 -37.27820 -35.95336 -34.68170 -32.70858 -31.88185 -28.44579 -27.38210 -27.26396 -25.43032 -23.04505 -22.65329 -21.33650 -20.44364 -18.72304 -18.18753 -17.85997 -17.59957 -17.21597 -16.81088 -16.37617 -15.97931 -14.97024 -14.94289 -14.74213 -14.56951 -14.29226 -14.16838 -13.81111 -13.56218 -13.31817 -13.09612 -13.07424 -12.96348 -12.78475 -12.64760 -12.36201 -12.26695 -12.13771 -12.05489 -11.86438 -11.55139 -11.17469 -11.02800 -10.78131 -10.57366 -9.70430 -8.22416 -6.37917 1.39010 1.40845 1.43812 1.50473 1.61089 1.92453 2.10276 2.41758 3.06560 3.46759 3.64482 3.71918 3.97382 4.00661 4.05650 4.09949 4.27179 4.41334 4.58393 4.60141 4.67681 4.70039 4.75171 4.80803 4.85285 4.85925 4.94669 5.07714 5.12175 5.21790 5.32989 5.49684 5.61819 5.66134 5.82320 6.04469 6.16315 6.68765 7.06137 7.21868 7.31225 8.84410 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.005586 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.847685 B = 5011.512172 C = 5454.818644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.048 3.952 3 H 0.070 0.930 4 C 0.135 3.865 5 N -0.625 5.625 6 C 0.092 3.908 7 C -0.114 4.114 8 C -0.158 4.158 9 C 0.495 3.505 10 O -0.573 6.573 11 O -0.353 6.353 12 C 0.474 3.526 13 O -0.542 6.542 14 C 0.051 3.949 15 H 0.033 0.967 16 C -0.116 4.116 17 C -0.539 4.539 18 H 0.058 0.942 19 C 0.019 3.981 20 N -0.912 5.912 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.273 1.273 24 H -0.271 1.271 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.147 0.853 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 2.921 20.329 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.008 4.008 3 H 0.088 0.912 4 C 0.012 3.988 5 N -0.358 5.358 6 C -0.029 4.029 7 C -0.151 4.151 8 C -0.198 4.198 9 C 0.284 3.716 10 O -0.452 6.452 11 O -0.271 6.271 12 C 0.319 3.681 13 O -0.433 6.433 14 C 0.032 3.968 15 H 0.051 0.949 16 C -0.174 4.174 17 C -0.577 4.577 18 H 0.077 0.923 19 C -0.181 4.181 20 N -0.550 5.550 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.196 1.196 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.165 0.835 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.113 0.887 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.403 2.632 19.930 20.107 hybrid contribution 0.004 0.529 -1.177 1.291 sum 0.407 3.161 18.753 19.022 Atomic orbital electron populations 1.22106 0.92174 1.03655 1.03730 1.23540 0.96253 0.97197 0.83803 0.91169 1.21686 0.78843 1.02223 0.95999 1.48451 1.06138 1.25805 1.55421 1.22416 0.93086 0.88749 0.98655 1.22660 0.95587 0.98564 0.98321 1.22445 0.92696 1.02647 1.02052 1.21743 0.90617 0.82133 0.77117 1.90724 1.83143 1.29527 1.41825 1.86752 1.76942 1.42652 1.20708 1.24653 0.72335 0.85662 0.85407 1.90425 1.50094 1.18132 1.84602 1.18592 0.95856 0.95888 0.86481 0.94909 1.21506 0.97006 0.97009 1.01897 1.21198 1.46201 0.94264 0.95993 0.92341 1.25762 0.94113 0.97911 1.00301 1.69997 1.44348 1.17770 1.22908 0.85439 0.78765 0.78706 0.77724 1.19674 1.19746 1.19599 0.90915 0.86861 0.94217 0.90242 0.83519 0.91968 0.86685 0.87094 0.87638 0.87015 0.88688 0.94943 0.90439 0.94408 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 9.55 71.98 0.69 -3.42 16 2 C 0.05 1.52 2.80 30.59 0.09 1.61 16 3 H 0.07 2.37 7.16 -2.39 -0.02 2.35 16 4 C 0.13 3.19 5.62 86.38 0.49 3.68 16 5 N -0.62 -15.84 2.90 -817.98 -2.37 -18.21 16 6 C 0.09 1.44 7.34 86.83 0.64 2.08 16 7 C -0.11 -1.41 7.20 31.73 0.23 -1.19 16 8 C -0.16 -3.50 6.87 30.67 0.21 -3.29 16 9 C 0.49 16.07 7.73 87.90 0.68 16.75 16 10 O -0.57 -25.09 17.44 -3.06 -0.05 -25.14 16 11 O -0.35 -15.63 9.29 -51.40 -0.48 -16.10 16 12 C 0.47 24.39 7.22 71.24 0.51 24.90 16 13 O -0.54 -29.15 14.68 21.98 0.32 -28.83 16 14 C 0.05 2.89 2.74 -12.29 -0.03 2.86 16 15 H 0.03 2.03 8.14 -2.38 -0.02 2.01 16 16 C -0.12 -6.15 8.90 71.98 0.64 -5.51 16 17 C -0.54 -32.39 8.37 25.60 0.21 -32.18 16 18 H 0.06 3.63 6.76 -2.91 -0.02 3.61 16 19 C 0.02 1.09 5.30 84.65 0.45 1.54 16 20 N -0.91 -53.68 11.32 21.45 0.24 -53.44 16 21 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.08 2.13 7.93 -2.39 -0.02 2.11 16 29 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 4.36 6.07 -2.39 -0.01 4.34 16 38 H 0.04 1.83 8.11 -2.39 -0.02 1.81 16 39 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -80.05 328.18 5.51 -74.53 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.03 Total: 12.04 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 4.80 Total: 7.82 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -2.13 Total: -71.65 kcal Atomic # 8 Polarization: -69.87 SS G_CDS: -0.21 Total: -70.07 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -80.05 5.51 -74.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870748185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.787 kcal (2) G-P(sol) polarization free energy of solvation -80.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds