Wall clock time and date at job start Mon Mar 30 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47151 * 2 1 4 4 C 1.50702 * 109.47205 * 240.00407 * 2 1 3 5 5 H 1.07993 * 119.99993 * 275.10707 * 4 2 1 6 6 C 1.37876 * 119.99971 * 95.10698 * 4 2 1 7 7 N 1.31516 * 120.00098 * 184.90361 * 6 4 2 8 8 Si 1.86802 * 120.00024 * 4.90766 * 6 4 2 9 9 H 1.48501 * 109.46979 * 84.81635 * 8 6 4 10 10 H 1.48503 * 109.47209 * 204.81293 * 8 6 4 11 11 H 1.48498 * 109.47379 * 324.81427 * 8 6 4 12 12 C 1.50699 * 109.47274 * 120.00250 * 2 1 3 13 13 O 1.20815 * 120.00012 * 119.99938 * 12 2 1 14 14 O 1.34234 * 119.99582 * 300.00482 * 12 2 1 15 15 C 1.45201 * 116.99500 * 179.97438 * 14 12 2 16 16 H 1.09009 * 109.47014 * 329.99377 * 15 14 12 17 17 C 1.52997 * 109.47360 * 89.99452 * 15 14 12 18 18 C 1.52999 * 109.47161 * 209.99936 * 15 14 12 19 19 N 1.46498 * 109.47458 * 64.99614 * 18 15 14 20 20 C 1.46756 * 124.35042 * 89.99979 * 19 18 15 21 21 C 1.54479 * 105.55062 * 162.92081 * 20 19 18 22 22 C 1.54851 * 101.65970 * 25.43775 * 21 20 19 23 23 C 1.34424 * 124.34709 * 269.98408 * 19 18 15 24 24 O 1.21272 * 124.94638 * 0.44175 * 23 19 18 25 25 H 1.08992 * 109.47425 * 175.09289 * 1 2 3 26 26 H 1.09000 * 109.47161 * 295.10149 * 1 2 3 27 27 H 1.09007 * 109.46854 * 55.09593 * 1 2 3 28 28 H 0.96996 * 119.99854 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46704 * 60.00187 * 17 15 14 30 30 H 1.09004 * 109.47434 * 179.97438 * 17 15 14 31 31 H 1.08993 * 109.47434 * 299.99907 * 17 15 14 32 32 H 1.09008 * 109.46824 * 304.99551 * 18 15 14 33 33 H 1.08994 * 109.47619 * 184.99917 * 18 15 14 34 34 H 1.09000 * 110.24738 * 281.96890 * 20 19 18 35 35 H 1.09004 * 110.24623 * 43.88035 * 20 19 18 36 36 H 1.08997 * 110.96833 * 143.58121 * 21 20 19 37 37 H 1.09006 * 110.97164 * 267.34138 * 21 20 19 38 38 H 1.08999 * 110.47414 * 216.51386 * 22 21 20 39 39 H 1.09005 * 110.60816 * 93.93376 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1339 -1.7855 -1.2297 6 6 2.3624 0.0125 -2.3573 7 7 2.7083 -0.6125 -3.4615 8 14 2.3182 1.8795 -2.3155 9 1 3.6039 2.3931 -1.7783 10 1 2.1130 2.4007 -3.6908 11 1 1.2028 2.3289 -1.4442 12 6 2.0324 -0.7104 1.2304 13 8 2.7270 -1.6927 1.1195 14 8 1.7080 -0.2519 2.4496 15 6 2.2267 -0.9865 3.5896 16 1 2.3401 -2.0375 3.3235 17 6 3.5870 -0.4122 3.9903 18 6 1.2538 -0.8598 4.7635 19 7 -0.0110 -1.5158 4.4226 20 6 -0.3091 -2.9281 4.6877 21 6 -1.8447 -3.0551 4.5776 22 6 -2.1895 -1.8753 3.6358 23 6 -1.0477 -0.9014 3.8270 24 8 -1.0650 0.2639 3.4916 25 1 -0.3634 -1.0238 -0.0879 26 1 -0.3633 0.4360 0.9306 27 1 -0.3633 0.5881 -0.8429 28 1 2.9401 -0.1040 -4.2543 29 1 3.4735 0.6388 4.2564 30 1 3.9763 -0.9634 4.8464 31 1 4.2802 -0.5025 3.1540 32 1 1.0715 0.1945 4.9722 33 1 1.6838 -1.3355 5.6449 34 1 0.1760 -3.5619 3.9453 35 1 0.0211 -3.2016 5.6899 36 1 -2.1262 -4.0082 4.1301 37 1 -2.3175 -2.9284 5.5516 38 1 -3.1344 -1.4174 3.9284 39 1 -2.2344 -2.2117 2.5999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870748192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:23 Heat of formation + Delta-G solvation = -128.594064 kcal Electronic energy + Delta-G solvation = -21788.123080 eV Core-core repulsion = 18502.698570 eV Total energy + Delta-G solvation = -3285.424510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.39680 -39.47852 -36.44799 -35.97096 -33.76706 -33.43537 -31.38582 -30.79569 -27.59391 -26.31139 -25.21792 -23.67833 -22.08072 -21.21920 -19.51344 -19.35901 -17.20001 -16.76673 -16.68685 -16.45710 -15.66381 -15.13401 -14.93747 -14.16940 -13.84130 -13.65742 -13.54552 -13.32967 -12.94222 -12.81177 -12.51967 -12.30082 -12.19154 -12.02397 -11.84227 -11.57548 -11.35106 -11.12774 -11.06183 -10.79152 -10.72111 -10.27856 -10.05632 -9.81077 -9.61393 -9.17910 -9.11342 -8.66978 -8.58818 -6.11172 -4.11973 2.75423 2.97686 3.23805 3.31688 3.37208 3.37688 3.50618 4.32660 4.34423 4.37585 4.65073 4.86501 4.94444 5.09732 5.16957 5.21488 5.26133 5.33186 5.45518 5.54399 5.55731 5.63796 5.71080 5.83676 5.97010 6.10243 6.24393 6.28547 6.54546 6.58431 6.69183 6.92740 7.16908 7.19693 7.34137 7.56653 8.32364 8.43192 8.89602 9.01043 9.47511 11.01333 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.005935 C = 0.005465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.124275 B = 4716.508905 C = 5121.838021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.025 3.975 3 H 0.063 0.937 4 C -0.503 4.503 5 H 0.086 0.914 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.868 3.132 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.260 1.260 12 C 0.463 3.537 13 O -0.507 6.507 14 O -0.349 6.349 15 C 0.060 3.940 16 H 0.081 0.919 17 C -0.166 4.166 18 C 0.134 3.866 19 N -0.623 5.623 20 C 0.100 3.900 21 C -0.130 4.130 22 C -0.158 4.158 23 C 0.517 3.483 24 O -0.510 6.510 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.266 0.734 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 -3.247 19.571 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.005 3.995 3 H 0.080 0.920 4 C -0.541 4.541 5 H 0.104 0.896 6 C -0.126 4.126 7 N -0.528 5.528 8 Si 0.694 3.306 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.185 1.185 12 C 0.306 3.694 13 O -0.393 6.393 14 O -0.267 6.267 15 C 0.003 3.997 16 H 0.099 0.901 17 C -0.224 4.224 18 C 0.011 3.989 19 N -0.358 5.358 20 C -0.023 4.023 21 C -0.168 4.168 22 C -0.198 4.198 23 C 0.304 3.696 24 O -0.384 6.384 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.566 -2.869 19.193 20.487 hybrid contribution 0.357 0.698 -0.120 0.793 sum -6.209 -2.171 19.073 20.175 Atomic orbital electron populations 1.21896 0.95728 1.01016 1.00483 1.19152 0.94877 0.96928 0.88532 0.91966 1.20749 1.43909 0.96118 0.93291 0.89594 1.24977 0.94198 0.98243 0.95225 1.69873 1.45377 1.35879 1.01668 0.86992 0.79454 0.86388 0.77739 1.19901 1.20968 1.18456 1.25154 0.76839 0.83342 0.84031 1.90505 1.35753 1.26451 1.86622 1.86791 1.69890 1.55158 1.14888 1.22979 0.93322 0.97631 0.85786 0.90124 1.22117 0.96147 1.01830 1.02313 1.21515 0.82456 0.99529 0.95367 1.48194 1.15055 1.11025 1.61552 1.22082 0.96244 0.82350 1.01630 1.22603 0.94619 0.99198 1.00368 1.22393 0.98651 0.96247 1.02503 1.20818 0.84305 0.87982 0.76482 1.90749 1.81711 1.16494 1.49462 0.93538 0.93539 0.92619 0.92365 0.91584 0.91298 0.91364 0.89018 0.88923 0.91121 0.90515 0.89214 0.90141 0.88262 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.14 37.16 0.34 -2.71 16 2 C 0.02 0.63 2.40 -92.92 -0.22 0.41 16 3 H 0.06 1.57 5.29 -51.93 -0.27 1.29 16 4 C -0.50 -14.82 8.36 -34.44 -0.29 -15.10 16 5 H 0.09 2.82 7.62 -52.49 -0.40 2.42 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 7 N -0.89 -27.56 13.96 55.43 0.77 -26.79 16 8 Si 0.87 21.59 26.99 -169.99 -4.59 17.00 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.26 -6.17 6.82 56.52 0.39 -5.78 16 12 C 0.46 11.13 7.22 36.01 0.26 11.39 16 13 O -0.51 -13.27 14.99 -18.74 -0.28 -13.55 16 14 O -0.35 -7.17 9.20 -39.29 -0.36 -7.53 16 15 C 0.06 0.93 2.80 -26.73 -0.07 0.86 16 16 H 0.08 1.35 7.16 -51.92 -0.37 0.98 16 17 C -0.17 -2.22 9.55 37.16 0.35 -1.86 16 18 C 0.13 1.63 5.62 -4.04 -0.02 1.61 16 19 N -0.62 -7.86 2.90 -172.42 -0.50 -8.36 16 20 C 0.10 0.88 7.34 -3.13 -0.02 0.86 16 21 C -0.13 -0.94 7.20 -24.98 -0.18 -1.12 16 22 C -0.16 -1.65 6.87 -26.62 -0.18 -1.84 16 23 C 0.52 7.71 7.73 -10.86 -0.08 7.63 16 24 O -0.51 -9.81 17.19 5.56 0.10 -9.72 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 1.01 7.75 -51.93 -0.40 0.61 16 27 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.20 7.93 -51.92 -0.41 0.79 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -35.98 327.70 -6.23 -42.21 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.08 Total: -0.46 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.22 Total: 2.26 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.27 Total: -35.15 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.55 Total: -30.79 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.59 Total: 17.00 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.98 -6.23 -42.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870748192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.388 kcal (2) G-P(sol) polarization free energy of solvation -35.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds