Wall clock time and date at job start Mon Mar 30 2020 01:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47151 * 2 1 4 4 C 1.50702 * 109.47205 * 240.00407 * 2 1 3 5 5 H 1.07993 * 119.99993 * 275.10707 * 4 2 1 6 6 C 1.37876 * 119.99971 * 95.10698 * 4 2 1 7 7 N 1.31516 * 120.00098 * 184.90361 * 6 4 2 8 8 Si 1.86802 * 120.00024 * 4.90766 * 6 4 2 9 9 H 1.48501 * 109.46979 * 84.81635 * 8 6 4 10 10 H 1.48503 * 109.47209 * 204.81293 * 8 6 4 11 11 H 1.48498 * 109.47379 * 324.81427 * 8 6 4 12 12 C 1.50699 * 109.47274 * 120.00250 * 2 1 3 13 13 O 1.20815 * 120.00012 * 119.99938 * 12 2 1 14 14 O 1.34234 * 119.99582 * 300.00482 * 12 2 1 15 15 C 1.45201 * 116.99500 * 179.97438 * 14 12 2 16 16 H 1.09009 * 109.47014 * 329.99377 * 15 14 12 17 17 C 1.52997 * 109.47360 * 89.99452 * 15 14 12 18 18 C 1.52999 * 109.47161 * 209.99936 * 15 14 12 19 19 N 1.46498 * 109.47458 * 64.99614 * 18 15 14 20 20 C 1.46756 * 124.35042 * 89.99979 * 19 18 15 21 21 C 1.54479 * 105.55062 * 162.92081 * 20 19 18 22 22 C 1.54851 * 101.65970 * 25.43775 * 21 20 19 23 23 C 1.34424 * 124.34709 * 269.98408 * 19 18 15 24 24 O 1.21272 * 124.94638 * 0.44175 * 23 19 18 25 25 H 1.08992 * 109.47425 * 175.09289 * 1 2 3 26 26 H 1.09000 * 109.47161 * 295.10149 * 1 2 3 27 27 H 1.09007 * 109.46854 * 55.09593 * 1 2 3 28 28 H 0.96996 * 119.99854 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46704 * 60.00187 * 17 15 14 30 30 H 1.09004 * 109.47434 * 179.97438 * 17 15 14 31 31 H 1.08993 * 109.47434 * 299.99907 * 17 15 14 32 32 H 1.09008 * 109.46824 * 304.99551 * 18 15 14 33 33 H 1.08994 * 109.47619 * 184.99917 * 18 15 14 34 34 H 1.09000 * 110.24738 * 281.96890 * 20 19 18 35 35 H 1.09004 * 110.24623 * 43.88035 * 20 19 18 36 36 H 1.08997 * 110.96833 * 143.58121 * 21 20 19 37 37 H 1.09006 * 110.97164 * 267.34138 * 21 20 19 38 38 H 1.08999 * 110.47414 * 216.51386 * 22 21 20 39 39 H 1.09005 * 110.60816 * 93.93376 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1339 -1.7855 -1.2297 6 6 2.3624 0.0125 -2.3573 7 7 2.7083 -0.6125 -3.4615 8 14 2.3182 1.8795 -2.3155 9 1 3.6039 2.3931 -1.7783 10 1 2.1130 2.4007 -3.6908 11 1 1.2028 2.3289 -1.4442 12 6 2.0324 -0.7104 1.2304 13 8 2.7270 -1.6927 1.1195 14 8 1.7080 -0.2519 2.4496 15 6 2.2267 -0.9865 3.5896 16 1 2.3401 -2.0375 3.3235 17 6 3.5870 -0.4122 3.9903 18 6 1.2538 -0.8598 4.7635 19 7 -0.0110 -1.5158 4.4226 20 6 -0.3091 -2.9281 4.6877 21 6 -1.8447 -3.0551 4.5776 22 6 -2.1895 -1.8753 3.6358 23 6 -1.0477 -0.9014 3.8270 24 8 -1.0650 0.2639 3.4916 25 1 -0.3634 -1.0238 -0.0879 26 1 -0.3633 0.4360 0.9306 27 1 -0.3633 0.5881 -0.8429 28 1 2.9401 -0.1040 -4.2543 29 1 3.4735 0.6388 4.2564 30 1 3.9763 -0.9634 4.8464 31 1 4.2802 -0.5025 3.1540 32 1 1.0715 0.1945 4.9722 33 1 1.6838 -1.3355 5.6449 34 1 0.1760 -3.5619 3.9453 35 1 0.0211 -3.2016 5.6899 36 1 -2.1262 -4.0082 4.1301 37 1 -2.3175 -2.9284 5.5516 38 1 -3.1344 -1.4174 3.9284 39 1 -2.2344 -2.2117 2.5999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870748192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:22 Heat of formation + Delta-G solvation = -152.960834 kcal Electronic energy + Delta-G solvation = -21789.179702 eV Core-core repulsion = 18502.698570 eV Total energy + Delta-G solvation = -3286.481132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.66663 -40.98188 -37.92971 -37.23944 -35.84294 -34.68466 -33.40470 -31.93971 -28.41981 -27.36555 -27.29879 -25.48349 -22.95047 -22.57233 -21.26704 -20.40585 -19.31559 -18.29398 -17.91426 -17.67136 -17.22065 -16.70779 -16.29741 -15.93104 -15.12885 -14.79937 -14.72326 -14.58426 -14.51015 -14.20957 -13.96019 -13.67132 -13.40537 -13.23203 -13.08871 -13.01535 -12.97240 -12.70254 -12.31731 -12.25147 -12.10045 -11.84607 -11.83956 -11.57309 -11.36372 -11.03902 -10.82729 -10.73378 -9.68162 -8.37695 -6.46055 1.29648 1.32063 1.40746 1.45554 1.64570 1.88199 2.11172 2.27302 2.98684 3.49018 3.66205 3.72154 3.97804 3.98250 4.03906 4.09151 4.26293 4.28220 4.39667 4.59468 4.60559 4.66043 4.68894 4.72524 4.81258 4.85583 4.89204 5.00829 5.08912 5.12062 5.22813 5.32695 5.40406 5.56150 5.64130 6.15897 6.19203 6.60892 7.03298 7.18580 7.24974 8.78993 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.005935 C = 0.005465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.124275 B = 4716.508905 C = 5121.838021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.018 3.982 3 H 0.071 0.929 4 C -0.515 4.515 5 H 0.033 0.967 6 C 0.021 3.979 7 N -0.938 5.938 8 Si 0.936 3.064 9 H -0.265 1.265 10 H -0.273 1.273 11 H -0.238 1.238 12 C 0.469 3.531 13 O -0.539 6.539 14 O -0.351 6.351 15 C 0.049 3.951 16 H 0.067 0.933 17 C -0.161 4.161 18 C 0.136 3.864 19 N -0.626 5.626 20 C 0.092 3.908 21 C -0.116 4.116 22 C -0.158 4.158 23 C 0.498 3.502 24 O -0.566 6.566 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.272 0.728 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.060 0.940 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 -2.598 22.337 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.001 4.001 3 H 0.089 0.911 4 C -0.552 4.552 5 H 0.052 0.948 6 C -0.177 4.177 7 N -0.576 5.576 8 Si 0.757 3.243 9 H -0.190 1.190 10 H -0.198 1.198 11 H -0.161 1.161 12 C 0.314 3.686 13 O -0.428 6.428 14 O -0.268 6.268 15 C -0.007 4.007 16 H 0.085 0.915 17 C -0.219 4.219 18 C 0.014 3.986 19 N -0.359 5.359 20 C -0.029 4.029 21 C -0.153 4.153 22 C -0.198 4.198 23 C 0.287 3.713 24 O -0.444 6.444 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.129 0.871 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.161 0.839 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.348 -2.258 22.009 23.313 hybrid contribution 0.629 0.361 -0.883 1.142 sum -6.720 -1.897 21.126 22.250 Atomic orbital electron populations 1.21726 0.93720 1.01015 1.01263 1.19099 0.96333 0.96816 0.87899 0.91145 1.20746 1.44769 0.94047 0.95656 0.94824 1.25883 0.93428 1.04062 0.94358 1.70014 1.46613 1.38352 1.02629 0.85911 0.80493 0.79135 0.78714 1.18964 1.19845 1.16149 1.24664 0.76187 0.82634 0.85132 1.90488 1.37188 1.27793 1.87376 1.86728 1.69711 1.55504 1.14867 1.23525 0.95769 0.96473 0.84942 0.91466 1.22119 0.93992 1.03095 1.02667 1.21662 0.81873 0.99988 0.95100 1.48444 1.14549 1.12512 1.60397 1.22387 0.97463 0.79853 1.03245 1.22653 0.93380 0.98479 1.00804 1.22444 0.97699 0.96664 1.03024 1.21650 0.85939 0.87912 0.75792 1.90699 1.83015 1.18893 1.51824 0.93989 0.92415 0.91987 0.91891 0.90574 0.87061 0.94390 0.89835 0.83870 0.92196 0.86975 0.87324 0.87765 0.86957 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 9.14 71.98 0.66 -4.80 16 2 C 0.02 0.93 2.40 -12.29 -0.03 0.90 16 3 H 0.07 3.49 5.29 -2.38 -0.01 3.48 16 4 C -0.51 -31.42 8.36 25.60 0.21 -31.21 16 5 H 0.03 2.34 7.62 -2.91 -0.02 2.32 16 6 C 0.02 1.27 5.47 84.65 0.46 1.74 16 7 N -0.94 -59.67 13.96 21.45 0.30 -59.37 16 8 Si 0.94 44.30 26.99 68.60 1.85 46.16 16 9 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.24 -10.39 6.82 99.48 0.68 -9.71 16 12 C 0.47 23.04 7.22 71.24 0.51 23.55 16 13 O -0.54 -29.32 14.99 22.00 0.33 -28.99 16 14 O -0.35 -14.39 9.20 -51.44 -0.47 -14.86 16 15 C 0.05 1.47 2.80 30.59 0.09 1.56 16 16 H 0.07 2.23 7.16 -2.38 -0.02 2.21 16 17 C -0.16 -4.01 9.55 71.98 0.69 -3.32 16 18 C 0.14 2.96 5.62 86.38 0.49 3.45 16 19 N -0.63 -14.50 2.90 -818.00 -2.37 -16.88 16 20 C 0.09 1.34 7.34 86.83 0.64 1.98 16 21 C -0.12 -1.29 7.20 31.73 0.23 -1.06 16 22 C -0.16 -3.08 6.87 30.67 0.21 -2.87 16 23 C 0.50 14.43 7.73 87.90 0.68 15.11 16 24 O -0.57 -21.81 17.19 -3.01 -0.05 -21.87 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 2.50 7.75 -2.39 -0.02 2.48 16 27 H 0.06 2.71 8.14 -2.38 -0.02 2.70 16 28 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 2.01 7.93 -2.38 -0.02 2.00 16 33 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -83.18 327.70 5.42 -77.77 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 1.00 Total: 13.00 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.83 Total: 5.04 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -2.07 Total: -76.25 kcal Atomic # 8 Polarization: -65.52 SS G_CDS: -0.20 Total: -65.72 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.85 Total: 46.16 kcal Total: -83.18 5.42 -77.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870748192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.193 kcal (2) G-P(sol) polarization free energy of solvation -83.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds