Wall clock time and date at job start Mon Mar 30 2020 01:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47303 * 2 1 4 4 C 1.53001 * 109.47046 * 240.00446 * 2 1 3 5 5 N 1.46500 * 109.47184 * 180.02562 * 4 2 1 6 6 C 1.46757 * 124.35186 * 89.99878 * 5 4 2 7 7 C 1.54479 * 105.47296 * 197.01291 * 6 5 4 8 8 C 1.54629 * 101.76538 * 334.58697 * 7 6 5 9 9 C 1.34421 * 124.34514 * 269.69415 * 5 4 2 10 10 O 1.21278 * 124.94447 * 359.57964 * 9 5 4 11 11 O 1.45196 * 109.47482 * 120.00325 * 2 1 3 12 12 C 1.34234 * 116.99938 * 269.99807 * 11 2 1 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 2 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 2 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47257 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99988 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00045 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00037 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00274 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47292 * 59.98803 * 20 18 16 22 22 H 1.48495 * 109.47425 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46765 * 299.99473 * 20 18 16 24 24 H 1.09004 * 109.47303 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47001 * 299.99731 * 1 2 3 26 26 H 1.08994 * 109.47774 * 59.99812 * 1 2 3 27 27 H 1.09004 * 109.46706 * 299.99920 * 4 2 1 28 28 H 1.08994 * 109.47304 * 59.99781 * 4 2 1 29 29 H 1.09000 * 110.24675 * 316.01407 * 6 5 4 30 30 H 1.09008 * 110.24851 * 77.92642 * 6 5 4 31 31 H 1.09007 * 110.96732 * 92.70239 * 7 6 5 32 32 H 1.09000 * 110.96979 * 216.46270 * 7 6 5 33 33 H 1.08998 * 110.48861 * 143.47504 * 8 7 6 34 34 H 1.09004 * 110.47911 * 265.98350 * 8 7 6 35 35 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 36 36 H 1.08997 * 109.47392 * 59.99712 * 14 12 11 37 37 H 1.09004 * 109.47330 * 299.99977 * 15 14 12 38 38 H 1.09005 * 109.47124 * 59.99773 * 15 14 12 39 39 H 0.97000 * 120.00297 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5049 -0.7217 -1.2490 6 6 4.3325 -1.7714 -0.6433 7 6 5.7406 -1.1531 -0.4972 8 6 5.7299 -0.0783 -1.6088 9 6 4.2638 0.2363 -1.8087 10 8 3.8354 1.2123 -2.3873 11 8 2.0140 -0.6845 1.1855 12 6 2.2172 0.0640 2.2811 13 8 1.9974 1.2516 2.2506 14 6 2.7184 -0.5773 3.5494 15 6 2.8626 0.4887 4.6373 16 6 3.3632 -0.1527 5.9059 17 1 3.5585 -1.2145 5.9334 18 6 3.5708 0.6159 7.0315 19 7 3.3324 1.9088 6.9981 20 14 4.1920 -0.1789 8.6037 21 1 5.5124 -0.8097 8.3513 22 1 4.3318 0.8557 9.6597 23 1 3.2258 -1.2147 9.0498 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6765 -1.7488 -1.2493 28 1 1.6766 -0.2073 -2.1392 29 1 3.9376 -2.0456 0.3349 30 1 4.3686 -2.6456 -1.2935 31 1 5.8665 -0.6973 0.4850 32 1 6.5148 -1.8979 -0.6820 33 1 6.2730 0.8099 -1.2859 34 1 6.1618 -0.4755 -2.5275 35 1 2.0089 -1.3370 3.8773 36 1 3.6872 -1.0410 3.3639 37 1 3.5719 1.2487 4.3097 38 1 1.8935 0.9520 4.8228 39 1 3.4788 2.4497 7.7899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870748726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:14 Heat of formation + Delta-G solvation = -138.857977 kcal Electronic energy + Delta-G solvation = -21008.178034 eV Core-core repulsion = 17722.308448 eV Total energy + Delta-G solvation = -3285.869586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.62676 -39.83129 -36.76662 -36.21879 -33.77990 -33.57290 -31.39246 -30.85292 -27.65494 -26.49170 -26.07536 -22.97036 -22.02612 -21.28488 -19.81157 -19.49458 -17.47145 -16.95357 -16.80720 -16.35955 -15.79335 -15.45867 -15.00051 -14.49708 -14.10882 -13.97331 -13.74549 -13.45288 -13.12459 -13.04238 -12.65322 -12.33269 -12.24835 -12.10853 -11.99656 -11.57891 -11.29951 -11.17141 -11.00865 -10.95265 -10.68619 -10.46381 -10.07568 -9.92787 -9.85356 -9.57479 -9.21465 -8.80755 -8.39515 -6.03082 -4.08562 2.47321 2.80991 2.86271 3.10844 3.30897 3.36102 3.37771 4.21636 4.35779 4.42172 4.64523 4.72502 4.84249 4.96700 5.03692 5.16747 5.27370 5.32126 5.33576 5.43247 5.48253 5.61036 5.66734 5.77976 5.86369 5.88792 6.03905 6.07730 6.16269 6.38594 6.63966 6.93790 7.00635 7.63858 7.70896 7.95957 8.06247 8.24463 8.41155 8.98405 9.55637 11.07846 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.004357 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.177897 B = 6424.960351 C = 7023.932984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.064 3.936 3 H 0.086 0.914 4 C 0.133 3.867 5 N -0.616 5.616 6 C 0.101 3.899 7 C -0.134 4.134 8 C -0.155 4.155 9 C 0.515 3.485 10 O -0.536 6.536 11 O -0.359 6.359 12 C 0.454 3.546 13 O -0.503 6.503 14 C -0.102 4.102 15 C 0.034 3.966 16 C -0.530 4.530 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 -10.348 -17.418 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.007 3.993 3 H 0.104 0.896 4 C 0.011 3.989 5 N -0.349 5.349 6 C -0.022 4.022 7 C -0.172 4.172 8 C -0.195 4.195 9 C 0.303 3.697 10 O -0.413 6.413 11 O -0.278 6.278 12 C 0.297 3.703 13 O -0.389 6.389 14 C -0.139 4.139 15 C -0.004 4.004 16 C -0.568 4.568 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.527 5.527 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.686 -9.295 -17.655 19.964 hybrid contribution 0.212 -0.245 0.923 0.978 sum 0.898 -9.541 -16.732 19.282 Atomic orbital electron populations 1.22117 0.93856 1.02959 1.03461 1.23090 0.94607 0.98168 0.83405 0.89592 1.21552 0.78618 1.02154 0.96583 1.48214 1.05903 1.24215 1.56591 1.22174 0.90435 0.89983 0.99614 1.22623 0.96559 0.98298 0.99687 1.22320 0.94484 1.01662 1.01049 1.21019 0.89531 0.81798 0.77382 1.90720 1.78869 1.28481 1.43190 1.86579 1.77611 1.43076 1.20527 1.24761 0.73971 0.86439 0.85106 1.90637 1.47452 1.17041 1.83768 1.21742 1.01521 1.01924 0.88741 1.19002 0.98522 0.92453 0.90376 1.21100 1.45336 0.94618 0.95716 0.92394 1.25018 0.95455 0.94801 0.98981 1.69983 1.48144 1.05031 1.29567 0.86607 0.79374 0.78939 0.82762 1.20160 1.21241 1.20162 0.91481 0.91325 0.90880 0.89219 0.88284 0.89126 0.91163 0.89540 0.89072 0.87970 0.87969 0.89070 0.89195 0.95679 0.95666 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.55 37.15 0.35 -1.59 16 2 C 0.06 0.89 2.83 -26.73 -0.08 0.81 16 3 H 0.09 1.49 7.16 -51.93 -0.37 1.11 16 4 C 0.13 1.46 5.64 -4.04 -0.02 1.43 16 5 N -0.62 -7.18 2.83 -172.42 -0.49 -7.66 16 6 C 0.10 0.90 7.19 -3.13 -0.02 0.87 16 7 C -0.13 -1.08 7.18 -25.10 -0.18 -1.27 16 8 C -0.16 -1.47 6.86 -26.74 -0.18 -1.65 16 9 C 0.51 6.95 8.02 -10.86 -0.09 6.86 16 10 O -0.54 -9.37 17.59 5.56 0.10 -9.27 16 11 O -0.36 -5.64 8.75 -39.27 -0.34 -5.98 16 12 C 0.45 8.86 7.93 36.01 0.29 9.14 16 13 O -0.50 -11.68 15.20 -18.75 -0.28 -11.97 16 14 C -0.10 -2.03 5.75 -27.89 -0.16 -2.19 16 15 C 0.03 0.88 4.26 -27.89 -0.12 0.76 16 16 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 20 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 1.04 7.92 -51.93 -0.41 0.63 16 29 H 0.09 0.88 7.28 -51.93 -0.38 0.50 16 30 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -34.92 332.46 -7.11 -42.03 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.19 Total: -2.00 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.62 Total: -0.14 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.25 Total: -33.87 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.53 Total: -27.22 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.92 -7.11 -42.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870748726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.830 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds