Wall clock time and date at job start Mon Mar 30 2020 01:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47303 * 2 1 4 4 C 1.53001 * 109.47046 * 240.00446 * 2 1 3 5 5 N 1.46500 * 109.47184 * 180.02562 * 4 2 1 6 6 C 1.46757 * 124.35186 * 89.99878 * 5 4 2 7 7 C 1.54479 * 105.47296 * 197.01291 * 6 5 4 8 8 C 1.54629 * 101.76538 * 334.58697 * 7 6 5 9 9 C 1.34421 * 124.34514 * 269.69415 * 5 4 2 10 10 O 1.21278 * 124.94447 * 359.57964 * 9 5 4 11 11 O 1.45196 * 109.47482 * 120.00325 * 2 1 3 12 12 C 1.34234 * 116.99938 * 269.99807 * 11 2 1 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 2 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 2 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47257 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99988 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00045 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00037 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00274 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47292 * 59.98803 * 20 18 16 22 22 H 1.48495 * 109.47425 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46765 * 299.99473 * 20 18 16 24 24 H 1.09004 * 109.47303 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47001 * 299.99731 * 1 2 3 26 26 H 1.08994 * 109.47774 * 59.99812 * 1 2 3 27 27 H 1.09004 * 109.46706 * 299.99920 * 4 2 1 28 28 H 1.08994 * 109.47304 * 59.99781 * 4 2 1 29 29 H 1.09000 * 110.24675 * 316.01407 * 6 5 4 30 30 H 1.09008 * 110.24851 * 77.92642 * 6 5 4 31 31 H 1.09007 * 110.96732 * 92.70239 * 7 6 5 32 32 H 1.09000 * 110.96979 * 216.46270 * 7 6 5 33 33 H 1.08998 * 110.48861 * 143.47504 * 8 7 6 34 34 H 1.09004 * 110.47911 * 265.98350 * 8 7 6 35 35 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 36 36 H 1.08997 * 109.47392 * 59.99712 * 14 12 11 37 37 H 1.09004 * 109.47330 * 299.99977 * 15 14 12 38 38 H 1.09005 * 109.47124 * 59.99773 * 15 14 12 39 39 H 0.97000 * 120.00297 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5049 -0.7217 -1.2490 6 6 4.3325 -1.7714 -0.6433 7 6 5.7406 -1.1531 -0.4972 8 6 5.7299 -0.0783 -1.6088 9 6 4.2638 0.2363 -1.8087 10 8 3.8354 1.2123 -2.3873 11 8 2.0140 -0.6845 1.1855 12 6 2.2172 0.0640 2.2811 13 8 1.9974 1.2516 2.2506 14 6 2.7184 -0.5773 3.5494 15 6 2.8626 0.4887 4.6373 16 6 3.3632 -0.1527 5.9059 17 1 3.5585 -1.2145 5.9334 18 6 3.5708 0.6159 7.0315 19 7 3.3324 1.9088 6.9981 20 14 4.1920 -0.1789 8.6037 21 1 5.5124 -0.8097 8.3513 22 1 4.3318 0.8557 9.6597 23 1 3.2258 -1.2147 9.0498 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6765 -1.7488 -1.2493 28 1 1.6766 -0.2073 -2.1392 29 1 3.9376 -2.0456 0.3349 30 1 4.3686 -2.6456 -1.2935 31 1 5.8665 -0.6973 0.4850 32 1 6.5148 -1.8979 -0.6820 33 1 6.2730 0.8099 -1.2859 34 1 6.1618 -0.4755 -2.5275 35 1 2.0089 -1.3370 3.8773 36 1 3.6872 -1.0410 3.3639 37 1 3.5719 1.2487 4.3097 38 1 1.8935 0.9520 4.8228 39 1 3.4788 2.4497 7.7899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870748726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:13 Heat of formation + Delta-G solvation = -161.326099 kcal Electronic energy + Delta-G solvation = -21009.152325 eV Core-core repulsion = 17722.308448 eV Total energy + Delta-G solvation = -3286.843877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79577 -41.12012 -38.12805 -37.34253 -35.65733 -34.80721 -33.13254 -32.03266 -28.45247 -28.10504 -27.34460 -24.68034 -22.82639 -22.65322 -21.38752 -20.48801 -19.16321 -18.22988 -17.93294 -17.70507 -17.26130 -16.79921 -16.49417 -16.12415 -15.29553 -15.03299 -14.75165 -14.61770 -14.54434 -14.25461 -13.99545 -13.65897 -13.38075 -13.30079 -13.12416 -12.98232 -12.78870 -12.53745 -12.35841 -12.14232 -12.00914 -11.84526 -11.81880 -11.70415 -11.44120 -11.27297 -10.89551 -10.57296 -9.75111 -8.19676 -6.34257 1.24364 1.43501 1.45704 1.48287 1.55872 1.67365 2.04445 2.43689 3.14277 3.41680 3.63237 3.64802 3.81701 3.89857 4.00443 4.06885 4.20824 4.34950 4.42949 4.44124 4.53091 4.69918 4.71110 4.73479 4.76785 4.91875 4.96515 5.07089 5.08058 5.23066 5.40856 5.47105 5.52059 5.52898 5.79755 6.08448 6.12146 6.79272 6.86722 7.07242 7.36642 8.92933 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.004357 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.177897 B = 6424.960351 C = 7023.932984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.060 3.940 3 H 0.043 0.957 4 C 0.135 3.865 5 N -0.618 5.618 6 C 0.095 3.905 7 C -0.127 4.127 8 C -0.151 4.151 9 C 0.497 3.503 10 O -0.589 6.589 11 O -0.339 6.339 12 C 0.462 3.538 13 O -0.550 6.550 14 C -0.090 4.090 15 C 0.039 3.961 16 C -0.542 4.542 17 H 0.081 0.919 18 C -0.005 4.005 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.260 1.260 22 H -0.290 1.290 23 H -0.262 1.262 24 H 0.095 0.905 25 H 0.040 0.960 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.119 0.881 37 H -0.015 1.015 38 H -0.015 1.015 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.860 -14.197 -17.745 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.004 3.996 3 H 0.061 0.939 4 C 0.013 3.987 5 N -0.350 5.350 6 C -0.026 4.026 7 C -0.165 4.165 8 C -0.190 4.190 9 C 0.287 3.713 10 O -0.470 6.470 11 O -0.256 6.256 12 C 0.307 3.693 13 O -0.440 6.440 14 C -0.128 4.128 15 C 0.002 3.998 16 C -0.580 4.580 17 H 0.099 0.901 18 C -0.202 4.202 19 N -0.578 5.578 20 Si 0.799 3.201 21 H -0.185 1.185 22 H -0.216 1.216 23 H -0.186 1.186 24 H 0.114 0.886 25 H 0.059 0.941 26 H 0.112 0.888 27 H 0.145 0.855 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.114 0.886 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.003 0.997 38 H 0.003 0.997 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.487 -13.223 -17.989 22.376 hybrid contribution -0.075 0.962 0.946 1.351 sum 1.412 -12.261 -17.043 21.043 Atomic orbital electron populations 1.22112 0.91920 1.04679 1.03163 1.23355 0.96257 0.96381 0.83626 0.93853 1.21664 0.78622 1.03814 0.94641 1.48462 1.06386 1.24400 1.55757 1.22446 0.90076 0.90173 0.99923 1.22666 0.97343 0.98410 0.98073 1.22373 0.91634 1.02106 1.02916 1.21813 0.91521 0.81266 0.76719 1.90680 1.80078 1.30607 1.45685 1.86533 1.77045 1.41950 1.20112 1.24611 0.73015 0.85696 0.85953 1.90638 1.49620 1.19140 1.84632 1.21502 1.03929 1.00148 0.87178 1.18781 0.95144 0.93229 0.92693 1.21603 1.44619 0.95741 0.96033 0.90096 1.26127 0.95558 0.95211 1.03338 1.70169 1.49793 1.07108 1.30754 0.85352 0.79466 0.77912 0.77404 1.18476 1.21567 1.18612 0.88641 0.94074 0.88795 0.85498 0.87872 0.89685 0.87711 0.91400 0.85495 0.88645 0.85191 0.86430 0.86306 0.99693 0.99663 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 9.55 71.98 0.69 -2.93 16 2 C 0.06 1.65 2.83 30.59 0.09 1.74 16 3 H 0.04 1.59 7.16 -2.39 -0.02 1.57 16 4 C 0.13 2.70 5.64 86.38 0.49 3.18 16 5 N -0.62 -13.41 2.83 -818.00 -2.31 -15.72 16 6 C 0.10 1.39 7.19 86.83 0.62 2.02 16 7 C -0.13 -1.73 7.18 31.65 0.23 -1.50 16 8 C -0.15 -2.63 6.86 30.59 0.21 -2.42 16 9 C 0.50 13.32 8.02 87.90 0.71 14.02 16 10 O -0.59 -21.39 17.59 -3.02 -0.05 -21.44 16 11 O -0.34 -10.29 8.75 -51.46 -0.45 -10.74 16 12 C 0.46 18.27 7.93 71.24 0.56 18.83 16 13 O -0.55 -27.06 15.20 21.98 0.33 -26.72 16 14 C -0.09 -3.54 5.75 29.85 0.17 -3.37 16 15 C 0.04 2.10 4.26 29.85 0.13 2.23 16 16 C -0.54 -29.85 9.11 25.60 0.23 -29.61 16 17 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 18 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 19 N -0.94 -58.64 13.29 21.45 0.28 -58.36 16 20 Si 0.98 43.10 29.54 68.60 2.03 45.12 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 24 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.10 2.03 7.92 -2.39 -0.02 2.01 16 29 H 0.08 1.37 7.28 -2.39 -0.02 1.36 16 30 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.12 4.03 8.14 -2.38 -0.02 4.01 16 36 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 37 H -0.02 -0.94 8.10 -2.38 -0.02 -0.96 16 38 H -0.02 -0.93 8.10 -2.38 -0.02 -0.94 16 39 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -81.44 332.46 5.44 -76.00 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.02 Total: 9.48 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 4.59 Total: 2.38 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -2.03 Total: -74.08 kcal Atomic # 8 Polarization: -58.74 SS G_CDS: -0.17 Total: -58.91 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -81.44 5.44 -76.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870748726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.323 kcal (2) G-P(sol) polarization free energy of solvation -81.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds