Wall clock time and date at job start Mon Mar 30 2020 01:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47040 * 2 1 4 4 N 1.46498 * 109.47427 * 120.00181 * 2 1 3 5 5 C 1.34426 * 124.35017 * 300.00181 * 4 2 1 6 6 O 1.21281 * 124.93880 * 359.55412 * 5 4 2 7 7 C 1.51276 * 110.11711 * 179.59150 * 5 4 2 8 8 C 1.54629 * 104.19508 * 343.74503 * 7 5 4 9 9 C 1.46755 * 124.35080 * 119.99750 * 4 2 1 10 10 H 1.08997 * 110.32092 * 77.97914 * 9 4 2 11 11 C 1.50700 * 110.24704 * 316.01696 * 9 4 2 12 12 O 1.20822 * 119.99958 * 2.49640 * 11 9 4 13 13 O 1.34234 * 120.00068 * 182.49832 * 11 9 4 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.47117 * 30.00246 * 14 13 11 16 16 C 1.52994 * 109.47482 * 269.99807 * 14 13 11 17 17 C 1.50707 * 109.46838 * 149.99799 * 14 13 11 18 18 H 1.07998 * 120.00336 * 0.02562 * 17 14 13 19 19 C 1.37884 * 119.99623 * 180.02562 * 17 14 13 20 20 N 1.31518 * 120.00031 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 119.99709 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.47091 * 89.99834 * 21 19 17 23 23 H 1.48494 * 109.47234 * 209.99692 * 21 19 17 24 24 H 1.48502 * 109.47281 * 329.99994 * 21 19 17 25 25 H 1.08999 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46978 * 299.99894 * 1 2 3 27 27 H 1.09001 * 109.47436 * 59.99656 * 1 2 3 28 28 H 1.09000 * 109.46978 * 240.00106 * 2 1 3 29 29 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47506 * 300.00033 * 3 2 1 31 31 H 1.09000 * 109.47148 * 60.00210 * 3 2 1 32 32 H 1.08997 * 110.48367 * 225.06421 * 7 5 4 33 33 H 1.09003 * 110.48813 * 102.42584 * 7 5 4 34 34 H 1.09001 * 110.96813 * 266.68068 * 8 7 5 35 35 H 1.09000 * 110.99633 * 142.93128 * 8 7 5 36 36 H 1.09004 * 109.47303 * 300.00325 * 16 14 13 37 37 H 1.09002 * 109.47001 * 60.00056 * 16 14 13 38 38 H 1.08994 * 109.47774 * 180.02562 * 16 14 13 39 39 H 0.96998 * 119.99390 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7481 -0.3084 2.4562 6 8 1.0766 0.6545 2.7610 7 6 2.4040 -1.2534 3.4386 8 6 2.7610 -2.4954 2.5895 9 6 2.8656 -1.8887 1.1726 10 1 3.8984 -1.6178 0.9537 11 6 2.3555 -2.8681 0.1471 12 8 1.4038 -2.5823 -0.5402 13 8 2.9585 -4.0580 -0.0027 14 6 2.4131 -4.9513 -1.0091 15 1 1.9723 -4.3646 -1.8152 16 6 1.3380 -5.8370 -0.3763 17 6 3.5154 -5.8171 -1.5627 18 1 4.5248 -5.7073 -1.1947 19 6 3.2352 -6.7494 -2.5392 20 7 2.0059 -6.8835 -2.9870 21 14 4.6014 -7.8230 -3.2249 22 1 4.7067 -9.0655 -2.4182 23 1 4.2953 -8.1730 -4.6351 24 1 5.8883 -7.0843 -3.1662 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.7075 -1.5216 4.2330 33 1 3.3054 -0.8046 3.8560 34 1 1.9676 -3.2414 2.6368 35 1 3.7139 -2.9218 2.9026 36 1 1.7788 -6.4237 0.4298 37 1 0.5408 -5.2108 0.0242 38 1 0.9289 -6.5079 -1.1316 39 1 1.8088 -7.5396 -3.6736 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873506713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:10 Heat of formation + Delta-G solvation = -125.448259 kcal Electronic energy + Delta-G solvation = -21676.848570 eV Core-core repulsion = 18391.560472 eV Total energy + Delta-G solvation = -3285.288097 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.97457 -39.22318 -36.54818 -35.59193 -34.93654 -33.32368 -30.06460 -29.89319 -28.24230 -27.00987 -25.39244 -23.14144 -22.34771 -21.71333 -19.88960 -18.70551 -17.46048 -17.02643 -16.44266 -15.93728 -15.46893 -15.14604 -14.85940 -14.37895 -14.00505 -13.78598 -13.53613 -13.18188 -12.99557 -12.65639 -12.37620 -12.21388 -11.92779 -11.80953 -11.64969 -11.35166 -11.16308 -11.15411 -11.10019 -10.90126 -10.88294 -10.45510 -10.34245 -9.87915 -9.65922 -9.47331 -9.00410 -8.69793 -8.55664 -6.25480 -4.33004 2.53671 2.76216 2.84969 3.20026 3.25930 3.29107 3.51328 4.22312 4.25758 4.42269 4.82647 4.85824 5.07875 5.09874 5.18101 5.38006 5.44348 5.52664 5.56187 5.74494 5.77872 5.83713 5.86743 5.93097 6.07684 6.23822 6.49144 6.54839 6.67704 6.79467 6.81519 7.04214 7.17385 7.51202 7.63257 7.83519 8.04773 8.17719 8.49886 8.77958 9.32874 10.81811 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030761 B = 0.004773 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.017462 B = 5865.278744 C = 6161.890851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.155 3.845 3 C -0.167 4.167 4 N -0.595 5.595 5 C 0.521 3.479 6 O -0.530 6.530 7 C -0.156 4.156 8 C -0.116 4.116 9 C 0.135 3.865 10 H 0.115 0.885 11 C 0.445 3.555 12 O -0.505 6.505 13 O -0.351 6.351 14 C 0.217 3.783 15 H 0.047 0.953 16 C -0.154 4.154 17 C -0.523 4.523 18 H 0.069 0.931 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.912 3.088 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.271 1.271 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.037 0.963 37 H 0.015 0.985 38 H 0.099 0.901 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 9.729 8.993 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 C -0.225 4.225 4 N -0.329 5.329 5 C 0.309 3.691 6 O -0.407 6.407 7 C -0.196 4.196 8 C -0.154 4.154 9 C 0.029 3.971 10 H 0.133 0.867 11 C 0.286 3.714 12 O -0.395 6.395 13 O -0.266 6.266 14 C 0.165 3.835 15 H 0.064 0.936 16 C -0.212 4.212 17 C -0.561 4.561 18 H 0.088 0.912 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.739 3.261 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.196 1.196 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.056 0.944 37 H 0.034 0.966 38 H 0.118 0.882 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.491 10.196 8.695 13.483 hybrid contribution 0.544 -0.779 -0.655 1.154 sum 2.036 9.417 8.040 12.549 Atomic orbital electron populations 1.22072 0.94477 1.03141 1.01967 1.21008 0.95078 0.91779 0.86730 1.22223 1.00984 0.96288 1.03012 1.48269 1.50688 1.27092 1.06899 1.20795 0.79652 0.85114 0.83537 1.90680 1.39645 1.29086 1.81308 1.22419 1.03015 0.95632 0.98561 1.22568 1.05110 0.97219 0.90514 1.21224 0.95867 0.84539 0.95468 0.86749 1.23297 0.81829 0.83353 0.82930 1.90613 1.26838 1.77362 1.44651 1.86483 1.57018 1.25152 1.57977 1.20673 0.93498 0.85391 0.83959 0.93552 1.22160 0.97256 1.00481 1.01311 1.21009 0.94738 1.19098 1.21209 0.91247 1.24891 0.96267 0.96899 0.95875 1.69896 1.18538 1.35133 1.29043 0.86265 0.81430 0.80274 0.78123 1.20311 1.20962 1.19597 0.91366 0.91991 0.92006 0.88463 0.92757 0.91522 0.91269 0.87752 0.87488 0.89263 0.87618 0.94367 0.96587 0.88220 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.03 37.16 0.34 -2.08 16 2 C 0.16 2.30 2.38 -67.93 -0.16 2.14 16 3 C -0.17 -2.10 9.20 37.16 0.34 -1.76 16 4 N -0.59 -8.57 2.59 -158.68 -0.41 -8.98 16 5 C 0.52 7.37 7.41 -10.86 -0.08 7.29 16 6 O -0.53 -8.99 15.12 5.56 0.08 -8.90 16 7 C -0.16 -1.56 6.86 -26.74 -0.18 -1.74 16 8 C -0.12 -1.25 6.65 -25.10 -0.17 -1.42 16 9 C 0.13 1.85 3.81 -68.17 -0.26 1.59 16 10 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 11 C 0.45 8.39 6.96 36.01 0.25 8.64 16 12 O -0.51 -10.80 12.12 -18.75 -0.23 -11.03 16 13 O -0.35 -7.60 9.84 -39.27 -0.39 -7.99 16 14 C 0.22 5.52 2.56 -27.88 -0.07 5.45 16 15 H 0.05 1.31 7.16 -51.93 -0.37 0.94 16 16 C -0.15 -3.74 9.33 37.15 0.35 -3.40 16 17 C -0.52 -14.03 8.90 -34.43 -0.31 -14.34 16 18 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 20 N -0.89 -24.55 11.32 55.43 0.63 -23.92 16 21 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H 0.07 1.18 7.11 -51.93 -0.37 0.81 16 26 H 0.06 0.97 6.80 -51.93 -0.35 0.62 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.10 1.57 6.49 -51.93 -0.34 1.23 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.95 6.77 -51.93 -0.35 0.60 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.06 7.91 -51.93 -0.41 0.65 16 35 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 2.62 6.07 -51.93 -0.32 2.30 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 317.93 15.07 4.79 4.79 Total: -1.00 -30.67 317.93 -6.45 -37.12 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.86 Total: 1.58 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -0.05 Total: 1.96 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.22 Total: -32.91 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.53 Total: -27.92 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.67 -6.45 -37.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873506713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.331 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds