Wall clock time and date at job start Mon Mar 30 2020 01:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47040 * 2 1 4 4 N 1.46498 * 109.47427 * 120.00181 * 2 1 3 5 5 C 1.34426 * 124.35017 * 300.00181 * 4 2 1 6 6 O 1.21281 * 124.93880 * 359.55412 * 5 4 2 7 7 C 1.51276 * 110.11711 * 179.59150 * 5 4 2 8 8 C 1.54629 * 104.19508 * 343.74503 * 7 5 4 9 9 C 1.46755 * 124.35080 * 119.99750 * 4 2 1 10 10 H 1.08997 * 110.32092 * 77.97914 * 9 4 2 11 11 C 1.50700 * 110.24704 * 316.01696 * 9 4 2 12 12 O 1.20822 * 119.99958 * 2.49640 * 11 9 4 13 13 O 1.34234 * 120.00068 * 182.49832 * 11 9 4 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.47117 * 30.00246 * 14 13 11 16 16 C 1.52994 * 109.47482 * 269.99807 * 14 13 11 17 17 C 1.50707 * 109.46838 * 149.99799 * 14 13 11 18 18 H 1.07998 * 120.00336 * 0.02562 * 17 14 13 19 19 C 1.37884 * 119.99623 * 180.02562 * 17 14 13 20 20 N 1.31518 * 120.00031 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 119.99709 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.47091 * 89.99834 * 21 19 17 23 23 H 1.48494 * 109.47234 * 209.99692 * 21 19 17 24 24 H 1.48502 * 109.47281 * 329.99994 * 21 19 17 25 25 H 1.08999 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46978 * 299.99894 * 1 2 3 27 27 H 1.09001 * 109.47436 * 59.99656 * 1 2 3 28 28 H 1.09000 * 109.46978 * 240.00106 * 2 1 3 29 29 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47506 * 300.00033 * 3 2 1 31 31 H 1.09000 * 109.47148 * 60.00210 * 3 2 1 32 32 H 1.08997 * 110.48367 * 225.06421 * 7 5 4 33 33 H 1.09003 * 110.48813 * 102.42584 * 7 5 4 34 34 H 1.09001 * 110.96813 * 266.68068 * 8 7 5 35 35 H 1.09000 * 110.99633 * 142.93128 * 8 7 5 36 36 H 1.09004 * 109.47303 * 300.00325 * 16 14 13 37 37 H 1.09002 * 109.47001 * 60.00056 * 16 14 13 38 38 H 1.08994 * 109.47774 * 180.02562 * 16 14 13 39 39 H 0.96998 * 119.99390 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7481 -0.3084 2.4562 6 8 1.0766 0.6545 2.7610 7 6 2.4040 -1.2534 3.4386 8 6 2.7610 -2.4954 2.5895 9 6 2.8656 -1.8887 1.1726 10 1 3.8984 -1.6178 0.9537 11 6 2.3555 -2.8681 0.1471 12 8 1.4038 -2.5823 -0.5402 13 8 2.9585 -4.0580 -0.0027 14 6 2.4131 -4.9513 -1.0091 15 1 1.9723 -4.3646 -1.8152 16 6 1.3380 -5.8370 -0.3763 17 6 3.5154 -5.8171 -1.5627 18 1 4.5248 -5.7073 -1.1947 19 6 3.2352 -6.7494 -2.5392 20 7 2.0059 -6.8835 -2.9870 21 14 4.6014 -7.8230 -3.2249 22 1 4.7067 -9.0655 -2.4182 23 1 4.2953 -8.1730 -4.6351 24 1 5.8883 -7.0843 -3.1662 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.7075 -1.5216 4.2330 33 1 3.3054 -0.8046 3.8560 34 1 1.9676 -3.2414 2.6368 35 1 3.7139 -2.9218 2.9026 36 1 1.7788 -6.4237 0.4298 37 1 0.5408 -5.2108 0.0242 38 1 0.9289 -6.5079 -1.1316 39 1 1.8088 -7.5396 -3.6736 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873506713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:09 Heat of formation + Delta-G solvation = -143.627602 kcal Electronic energy + Delta-G solvation = -21677.636885 eV Core-core repulsion = 18391.560472 eV Total energy + Delta-G solvation = -3286.076413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.20818 -40.71641 -37.96165 -37.07656 -36.06637 -35.27241 -31.80149 -31.07631 -29.49074 -28.15644 -27.44021 -24.45900 -23.44321 -23.18908 -21.52857 -19.89909 -18.94008 -18.64584 -17.81957 -17.52132 -16.78554 -16.71527 -16.44856 -15.78074 -15.18120 -14.89500 -14.78965 -14.65143 -14.21795 -14.09196 -13.84631 -13.70407 -13.22288 -13.09900 -13.04814 -12.84409 -12.80772 -12.75773 -12.40967 -12.25636 -12.18609 -12.08824 -12.03190 -11.55537 -11.33106 -10.99223 -10.64739 -10.58046 -9.87553 -8.27731 -6.44357 1.24613 1.38909 1.45696 1.46122 1.57225 1.72027 2.11354 2.41942 3.03753 3.23382 3.45111 3.77812 3.91623 4.00224 4.08870 4.11859 4.28133 4.48969 4.54591 4.64319 4.67681 4.77132 4.77947 4.83961 4.85543 4.90131 5.01990 5.04252 5.12634 5.15722 5.27564 5.49823 5.52291 5.63830 5.92766 6.06108 6.10115 6.61037 6.91587 7.10017 7.27694 8.79652 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030761 B = 0.004773 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.017462 B = 5865.278744 C = 6161.890851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.149 3.851 3 C -0.155 4.155 4 N -0.602 5.602 5 C 0.511 3.489 6 O -0.563 6.563 7 C -0.140 4.140 8 C -0.109 4.109 9 C 0.141 3.859 10 H 0.147 0.853 11 C 0.438 3.562 12 O -0.536 6.536 13 O -0.352 6.352 14 C 0.221 3.779 15 H 0.006 0.994 16 C -0.141 4.141 17 C -0.544 4.544 18 H 0.072 0.928 19 C 0.016 3.984 20 N -0.919 5.919 21 Si 0.981 3.019 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.263 1.263 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.048 0.952 37 H 0.020 0.980 38 H 0.077 0.923 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 9.742 10.346 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.048 3.952 3 C -0.213 4.213 4 N -0.336 5.336 5 C 0.301 3.699 6 O -0.443 6.443 7 C -0.180 4.180 8 C -0.147 4.147 9 C 0.035 3.965 10 H 0.165 0.835 11 C 0.281 3.719 12 O -0.426 6.426 13 O -0.267 6.267 14 C 0.168 3.832 15 H 0.024 0.976 16 C -0.199 4.199 17 C -0.582 4.582 18 H 0.090 0.910 19 C -0.184 4.184 20 N -0.557 5.557 21 Si 0.805 3.195 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.187 1.187 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.160 0.840 34 H 0.093 0.907 35 H 0.159 0.841 36 H 0.068 0.932 37 H 0.039 0.961 38 H 0.096 0.904 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.640 10.216 10.071 14.800 hybrid contribution -0.201 -0.715 -1.096 1.324 sum 3.439 9.501 8.974 13.514 Atomic orbital electron populations 1.21983 0.95292 1.01275 1.02304 1.21004 0.94514 0.93109 0.86623 1.22114 1.01626 0.94462 1.03107 1.48437 1.50892 1.27125 1.07119 1.21569 0.79110 0.85210 0.83977 1.90663 1.41089 1.30767 1.81745 1.22464 1.04307 0.93793 0.97395 1.22679 1.06562 0.97185 0.88254 1.21515 0.96607 0.82929 0.95415 0.83541 1.24455 0.81163 0.82913 0.83340 1.90613 1.28302 1.77636 1.46093 1.86462 1.57202 1.26182 1.56872 1.20306 0.93477 0.85458 0.83994 0.97594 1.21969 0.97114 1.00035 1.00764 1.21308 0.95112 1.19775 1.22006 0.91000 1.25816 0.98628 0.98031 0.95891 1.70026 1.20530 1.35718 1.29402 0.85201 0.78500 0.78523 0.77325 1.19263 1.20741 1.18702 0.94185 0.92682 0.90590 0.90206 0.91556 0.90107 0.92413 0.86340 0.84005 0.90682 0.84126 0.93245 0.96110 0.90422 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.03 71.98 0.65 -4.06 16 2 C 0.15 4.41 2.38 44.99 0.11 4.52 16 3 C -0.16 -3.74 9.20 71.98 0.66 -3.08 16 4 N -0.60 -16.67 2.59 -774.54 -2.01 -18.68 16 5 C 0.51 13.58 7.41 87.90 0.65 14.24 16 6 O -0.56 -18.62 15.12 -3.03 -0.05 -18.67 16 7 C -0.14 -2.28 6.86 30.59 0.21 -2.07 16 8 C -0.11 -1.99 6.65 31.65 0.21 -1.77 16 9 C 0.14 3.57 3.81 44.70 0.17 3.74 16 10 H 0.15 2.86 8.14 -2.39 -0.02 2.84 16 11 C 0.44 16.51 6.96 71.24 0.50 17.01 16 12 O -0.54 -23.73 12.12 21.98 0.27 -23.46 16 13 O -0.35 -15.20 9.84 -51.46 -0.51 -15.71 16 14 C 0.22 11.48 2.56 29.85 0.08 11.56 16 15 H 0.01 0.37 7.16 -2.39 -0.02 0.35 16 16 C -0.14 -6.97 9.33 71.98 0.67 -6.30 16 17 C -0.54 -29.36 8.90 25.60 0.23 -29.13 16 18 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 19 C 0.02 0.85 5.30 84.66 0.45 1.30 16 20 N -0.92 -51.57 11.32 21.45 0.24 -51.32 16 21 Si 0.98 41.31 29.54 68.60 2.03 43.34 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 25 H 0.04 1.45 7.11 -2.39 -0.02 1.43 16 26 H 0.05 1.77 6.80 -2.39 -0.02 1.76 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.08 2.63 6.49 -2.39 -0.02 2.61 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.06 1.54 6.77 -2.39 -0.02 1.53 16 32 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.62 7.91 -2.39 -0.02 1.60 16 35 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 4.19 6.07 -2.39 -0.01 4.17 16 39 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -68.69 317.93 5.59 -63.10 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.04 Total: 15.45 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 4.58 Total: 5.95 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -1.76 Total: -70.00 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -0.29 Total: -57.84 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -68.69 5.59 -63.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873506713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.527 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds