Wall clock time and date at job start Mon Mar 30 2020 01:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47170 * 2 1 4 4 C 1.50697 * 109.47207 * 239.99467 * 2 1 3 5 5 H 1.08003 * 120.00126 * 240.00466 * 4 2 1 6 6 C 1.37879 * 119.99938 * 60.00125 * 4 2 1 7 7 N 1.31510 * 120.00277 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99937 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47018 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47194 * 120.00077 * 8 6 4 11 11 H 1.48504 * 109.46675 * 240.00214 * 8 6 4 12 12 C 1.50704 * 109.46922 * 119.99859 * 2 1 3 13 13 O 1.20820 * 120.00405 * 119.99780 * 12 2 1 14 14 O 1.34232 * 119.99776 * 299.99671 * 12 2 1 15 15 C 1.45195 * 117.00075 * 180.02562 * 14 12 2 16 16 C 1.53004 * 109.47013 * 180.02562 * 15 14 12 17 17 H 1.08999 * 109.79404 * 328.82096 * 16 15 14 18 18 C 1.53062 * 109.63423 * 89.32713 * 16 15 14 19 19 C 1.51773 * 110.76150 * 34.80393 * 18 16 15 20 20 C 1.51771 * 113.82690 * 66.78162 * 19 18 16 21 21 C 1.52987 * 110.88301 * 293.01535 * 20 19 18 22 22 N 1.47192 * 108.66584 * 86.46075 * 21 20 19 23 23 C 1.33374 * 120.43177 * 288.05430 * 22 21 20 24 24 O 1.21278 * 119.89226 * 180.27906 * 23 22 21 25 25 H 1.09008 * 109.46685 * 60.00215 * 1 2 3 26 26 H 1.08993 * 109.47622 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46989 * 300.00777 * 1 2 3 28 28 H 0.96998 * 120.00505 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46916 * 60.00121 * 15 14 12 30 30 H 1.09001 * 109.47079 * 299.99820 * 15 14 12 31 31 H 1.09001 * 109.22310 * 155.10339 * 18 16 15 32 32 H 1.09000 * 109.22001 * 274.45220 * 18 16 15 33 33 H 1.09001 * 108.59477 * 305.66408 * 19 18 16 34 34 H 1.09005 * 108.50194 * 187.83494 * 19 18 16 35 35 H 1.09000 * 109.19435 * 172.65476 * 20 19 18 36 36 H 1.09006 * 109.15902 * 53.35276 * 20 19 18 37 37 H 1.09001 * 109.60131 * 326.70809 * 21 20 19 38 38 H 1.08993 * 109.74248 * 206.30064 * 21 20 19 39 39 H 0.96994 * 119.78148 * 108.03494 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3214 -1.1207 -4.0079 9 1 3.1465 -2.2873 -3.6035 10 1 1.1662 -1.5870 -4.8159 11 1 3.1467 -0.1877 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1198 14 8 1.7080 -0.2517 2.4496 15 6 2.2276 -0.9855 3.5897 16 6 1.7554 -0.3188 4.8834 17 1 1.6460 0.7543 4.7271 18 6 0.4120 -0.9162 5.3092 19 6 0.3447 -2.3918 4.9608 20 6 1.3133 -3.2530 5.7504 21 6 2.7608 -2.9309 5.3742 22 7 3.2235 -1.8054 6.2023 23 6 2.7641 -0.5725 5.9840 24 8 3.1558 0.3486 6.6688 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 0.7096 1.1616 -3.4845 29 1 3.3171 -0.9844 3.5567 30 1 1.8640 -2.0126 3.5571 31 1 0.2909 -0.7963 6.3858 32 1 -0.3933 -0.3893 4.7973 33 1 0.5614 -2.5085 3.8989 34 1 -0.6689 -2.7459 5.1491 35 1 1.1133 -4.3034 5.5390 36 1 1.1702 -3.0682 6.8151 37 1 2.8122 -2.6554 4.3209 38 1 3.3908 -3.8017 5.5556 39 1 3.8665 -1.9615 6.9115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873611653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:28 Heat of formation + Delta-G solvation = -117.335503 kcal Electronic energy + Delta-G solvation = -21491.478210 eV Core-core repulsion = 18206.541908 eV Total energy + Delta-G solvation = -3284.936302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.02353 -39.41571 -37.28501 -35.72264 -34.07733 -33.90972 -31.74996 -30.60231 -28.26614 -25.23890 -25.05572 -24.20761 -22.98706 -20.97913 -19.55175 -19.36566 -17.47097 -17.09484 -16.73132 -16.17991 -15.85704 -15.45667 -14.98960 -14.46471 -14.36530 -14.09569 -13.85426 -13.63152 -13.19317 -12.84028 -12.59356 -12.22159 -11.93409 -11.62015 -11.55944 -11.08748 -11.02041 -10.92763 -10.83204 -10.73100 -10.50816 -10.34904 -10.12007 -10.05045 -9.73931 -9.23096 -9.14536 -9.05831 -8.47630 -6.12734 -4.18331 2.46426 3.07181 3.24779 3.27772 3.34372 3.38233 3.48443 4.27890 4.38823 4.50679 4.54115 4.62475 4.84173 4.94346 5.12630 5.20045 5.21312 5.26570 5.38437 5.55811 5.58200 5.69978 5.78715 5.87664 5.96507 6.13511 6.17683 6.62730 6.63761 6.83726 6.85202 7.05388 7.16397 7.40961 7.71783 7.92064 8.07050 8.11497 8.79531 8.91097 9.47466 10.94685 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031946 B = 0.004381 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.279794 B = 6389.881323 C = 6486.049053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.065 0.935 4 C -0.512 4.512 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.466 3.534 13 O -0.518 6.518 14 O -0.362 6.362 15 C 0.045 3.955 16 C -0.107 4.107 17 H 0.121 0.879 18 C -0.107 4.107 19 C -0.139 4.139 20 C -0.139 4.139 21 C 0.073 3.927 22 N -0.721 5.721 23 C 0.530 3.470 24 O -0.548 6.548 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.397 -6.919 15.552 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.037 3.963 3 H 0.082 0.918 4 C -0.550 4.550 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.311 3.689 13 O -0.406 6.406 14 O -0.281 6.281 15 C -0.029 4.029 16 C -0.128 4.128 17 H 0.139 0.861 18 C -0.145 4.145 19 C -0.176 4.176 20 C -0.177 4.177 21 C -0.051 4.051 22 N -0.374 5.374 23 C 0.316 3.684 24 O -0.425 6.425 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.201 -6.598 15.604 16.984 hybrid contribution 0.662 -0.669 -0.477 1.055 sum -0.539 -7.266 15.127 16.790 Atomic orbital electron populations 1.21729 0.95545 1.00009 1.01797 1.18782 0.94915 0.97036 0.85520 0.91782 1.21165 1.31881 1.13235 0.88746 0.90589 1.24938 0.94900 0.95012 0.99144 1.69883 1.36543 1.22786 1.23783 0.86335 0.78651 0.79714 0.82189 1.19530 1.20881 1.20893 1.25383 0.76487 0.83204 0.83860 1.90487 1.36417 1.26855 1.86795 1.86650 1.70281 1.55871 1.15267 1.23729 0.98806 0.96586 0.83774 1.21635 0.95030 1.04433 0.91699 0.86114 1.21273 0.95724 0.95728 1.01736 1.21360 1.00133 0.94602 1.01515 1.21802 0.94349 1.00474 1.01101 1.22532 0.95560 0.89264 0.97734 1.45896 1.46376 1.07955 1.37128 1.20308 0.81124 0.82294 0.84649 1.90751 1.59022 1.42959 1.49778 0.88574 0.94997 0.95721 0.92724 0.91726 0.88204 0.91389 0.89700 0.90391 0.91072 0.90296 0.91189 0.87958 0.89267 0.76387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.90 37.16 0.33 -2.72 16 2 C 0.06 1.40 2.74 -92.92 -0.25 1.15 16 3 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 4 C -0.51 -14.11 8.37 -34.44 -0.29 -14.40 16 5 H 0.08 2.18 6.76 -52.48 -0.35 1.82 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.50 11.32 55.43 0.63 -23.87 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.47 10.55 7.25 36.01 0.26 10.82 16 13 O -0.52 -12.59 15.21 -18.75 -0.29 -12.87 16 14 O -0.36 -6.88 10.09 -39.26 -0.40 -7.28 16 15 C 0.04 0.67 3.05 37.16 0.11 0.78 16 16 C -0.11 -1.39 2.86 -91.38 -0.26 -1.65 16 17 H 0.12 1.69 8.08 -51.93 -0.42 1.27 16 18 C -0.11 -1.13 5.48 -27.32 -0.15 -1.28 16 19 C -0.14 -1.30 5.18 -27.98 -0.15 -1.45 16 20 C -0.14 -1.07 5.74 -27.36 -0.16 -1.23 16 21 C 0.07 0.62 6.38 -3.67 -0.02 0.59 16 22 N -0.72 -7.26 5.27 -59.90 -0.32 -7.58 16 23 C 0.53 7.13 6.44 -11.25 -0.07 7.06 16 24 O -0.55 -9.39 17.92 5.56 0.10 -9.29 16 25 H 0.10 2.40 6.07 -51.92 -0.32 2.09 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.06 1.01 7.56 -51.93 -0.39 0.62 16 30 H 0.10 1.37 2.79 -51.93 -0.14 1.22 16 31 H 0.07 0.67 7.86 -51.93 -0.41 0.26 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.86 5.56 -51.93 -0.29 0.57 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 37 H 0.10 1.08 3.62 -51.93 -0.19 0.89 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.40 3.40 8.91 -40.82 -0.36 3.04 16 LS Contribution 308.91 15.07 4.66 4.66 Total: -1.00 -31.51 308.91 -6.76 -38.27 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.39 Total: 2.60 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.74 Total: -0.75 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.31 Total: -31.45 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.58 Total: -29.45 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.51 -6.76 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873611653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.067 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds