Wall clock time and date at job start Mon Mar 30 2020 01:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47170 * 2 1 4 4 C 1.50697 * 109.47207 * 239.99467 * 2 1 3 5 5 H 1.08003 * 120.00126 * 240.00466 * 4 2 1 6 6 C 1.37879 * 119.99938 * 60.00125 * 4 2 1 7 7 N 1.31510 * 120.00277 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99937 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47018 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47194 * 120.00077 * 8 6 4 11 11 H 1.48504 * 109.46675 * 240.00214 * 8 6 4 12 12 C 1.50704 * 109.46922 * 119.99859 * 2 1 3 13 13 O 1.20820 * 120.00405 * 119.99780 * 12 2 1 14 14 O 1.34232 * 119.99776 * 299.99671 * 12 2 1 15 15 C 1.45195 * 117.00075 * 180.02562 * 14 12 2 16 16 C 1.53004 * 109.47013 * 180.02562 * 15 14 12 17 17 H 1.08999 * 109.79404 * 328.82096 * 16 15 14 18 18 C 1.53062 * 109.63423 * 89.32713 * 16 15 14 19 19 C 1.51773 * 110.76150 * 34.80393 * 18 16 15 20 20 C 1.51771 * 113.82690 * 66.78162 * 19 18 16 21 21 C 1.52987 * 110.88301 * 293.01535 * 20 19 18 22 22 N 1.47192 * 108.66584 * 86.46075 * 21 20 19 23 23 C 1.33374 * 120.43177 * 288.05430 * 22 21 20 24 24 O 1.21278 * 119.89226 * 180.27906 * 23 22 21 25 25 H 1.09008 * 109.46685 * 60.00215 * 1 2 3 26 26 H 1.08993 * 109.47622 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46989 * 300.00777 * 1 2 3 28 28 H 0.96998 * 120.00505 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46916 * 60.00121 * 15 14 12 30 30 H 1.09001 * 109.47079 * 299.99820 * 15 14 12 31 31 H 1.09001 * 109.22310 * 155.10339 * 18 16 15 32 32 H 1.09000 * 109.22001 * 274.45220 * 18 16 15 33 33 H 1.09001 * 108.59477 * 305.66408 * 19 18 16 34 34 H 1.09005 * 108.50194 * 187.83494 * 19 18 16 35 35 H 1.09000 * 109.19435 * 172.65476 * 20 19 18 36 36 H 1.09006 * 109.15902 * 53.35276 * 20 19 18 37 37 H 1.09001 * 109.60131 * 326.70809 * 21 20 19 38 38 H 1.08993 * 109.74248 * 206.30064 * 21 20 19 39 39 H 0.96994 * 119.78148 * 108.03494 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3214 -1.1207 -4.0079 9 1 3.1465 -2.2873 -3.6035 10 1 1.1662 -1.5870 -4.8159 11 1 3.1467 -0.1877 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1198 14 8 1.7080 -0.2517 2.4496 15 6 2.2276 -0.9855 3.5897 16 6 1.7554 -0.3188 4.8834 17 1 1.6460 0.7543 4.7271 18 6 0.4120 -0.9162 5.3092 19 6 0.3447 -2.3918 4.9608 20 6 1.3133 -3.2530 5.7504 21 6 2.7608 -2.9309 5.3742 22 7 3.2235 -1.8054 6.2023 23 6 2.7641 -0.5725 5.9840 24 8 3.1558 0.3486 6.6688 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 0.7096 1.1616 -3.4845 29 1 3.3171 -0.9844 3.5567 30 1 1.8640 -2.0126 3.5571 31 1 0.2909 -0.7963 6.3858 32 1 -0.3933 -0.3893 4.7973 33 1 0.5614 -2.5085 3.8989 34 1 -0.6689 -2.7459 5.1491 35 1 1.1133 -4.3034 5.5390 36 1 1.1702 -3.0682 6.8151 37 1 2.8122 -2.6554 4.3209 38 1 3.3908 -3.8017 5.5556 39 1 3.8665 -1.9615 6.9115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873611653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:27 Heat of formation + Delta-G solvation = -137.705109 kcal Electronic energy + Delta-G solvation = -21492.361503 eV Core-core repulsion = 18206.541908 eV Total energy + Delta-G solvation = -3285.819594 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.13758 -41.00705 -38.41534 -37.23929 -35.90434 -35.03273 -32.86739 -32.41154 -29.28213 -27.26587 -26.20134 -25.10575 -24.62511 -22.25921 -20.90426 -20.40035 -18.64859 -18.40057 -18.20914 -17.96623 -17.34632 -16.96007 -16.36261 -16.02176 -15.31732 -15.26153 -14.93509 -14.68902 -14.60614 -14.29420 -13.97584 -13.61480 -13.24095 -12.98567 -12.79121 -12.76095 -12.65375 -12.56747 -12.26821 -12.05322 -11.89212 -11.80388 -11.63263 -11.26545 -11.08137 -10.99104 -10.79929 -10.51711 -10.13633 -8.18735 -6.31968 1.34888 1.41796 1.44389 1.45273 1.57163 1.87012 2.27236 2.45428 3.11641 3.33551 3.50307 3.60925 3.79089 3.95861 4.02826 4.18890 4.31011 4.33057 4.35939 4.56839 4.71336 4.73651 4.77007 4.92457 4.95022 5.01751 5.06324 5.13397 5.21762 5.40141 5.40835 5.48573 5.70774 5.79581 5.90981 6.10964 6.12133 6.75039 7.04134 7.09160 7.37127 8.87861 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031946 B = 0.004381 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.279794 B = 6389.881323 C = 6486.049053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.047 3.953 3 H 0.047 0.953 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.272 1.272 11 H -0.276 1.276 12 C 0.475 3.525 13 O -0.539 6.539 14 O -0.360 6.360 15 C 0.043 3.957 16 C -0.103 4.103 17 H 0.107 0.893 18 C -0.104 4.104 19 C -0.139 4.139 20 C -0.135 4.135 21 C 0.069 3.931 22 N -0.706 5.706 23 C 0.530 3.470 24 O -0.591 6.591 25 H 0.075 0.925 26 H 0.033 0.967 27 H 0.049 0.951 28 H 0.267 0.733 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 -8.524 16.272 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.028 3.972 3 H 0.065 0.935 4 C -0.574 4.574 5 H 0.076 0.924 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.788 3.212 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.320 3.680 13 O -0.428 6.428 14 O -0.277 6.277 15 C -0.029 4.029 16 C -0.125 4.125 17 H 0.125 0.875 18 C -0.142 4.142 19 C -0.176 4.176 20 C -0.173 4.173 21 C -0.053 4.053 22 N -0.357 5.357 23 C 0.316 3.684 24 O -0.472 6.472 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.676 -8.228 16.341 18.372 hybrid contribution 0.820 -0.174 -0.621 1.043 sum -0.856 -8.402 15.720 17.845 Atomic orbital electron populations 1.21552 0.94121 1.00120 1.01972 1.18704 0.96154 0.96030 0.86284 0.93526 1.21285 1.32491 1.13239 0.90384 0.92354 1.25642 0.94913 0.95645 1.01606 1.69969 1.36777 1.23440 1.24649 0.85421 0.78356 0.78524 0.78859 1.19927 1.19766 1.20185 1.24784 0.76055 0.82595 0.84572 1.90466 1.37278 1.27680 1.87374 1.86579 1.69925 1.56127 1.15116 1.24116 0.98386 0.97603 0.82844 1.21592 0.96577 1.03699 0.90594 0.87489 1.21302 0.93917 0.96656 1.02309 1.21377 1.01811 0.93889 1.00522 1.21797 0.92896 1.01361 1.01205 1.22688 0.97133 0.89410 0.96115 1.45862 1.45537 1.07328 1.36975 1.20313 0.80948 0.82834 0.84279 1.90734 1.60564 1.44513 1.51410 0.90603 0.94804 0.93204 0.92319 0.92596 0.86184 0.90376 0.89640 0.92197 0.89286 0.88069 0.90366 0.90051 0.86075 0.75203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.90 71.98 0.64 -4.85 16 2 C 0.05 2.39 2.74 -12.29 -0.03 2.36 16 3 H 0.05 2.49 8.14 -2.39 -0.02 2.48 16 4 C -0.54 -29.94 8.37 25.60 0.21 -29.72 16 5 H 0.06 3.41 6.76 -2.91 -0.02 3.39 16 6 C 0.02 1.18 5.30 84.66 0.45 1.63 16 7 N -0.91 -50.08 11.32 21.45 0.24 -49.84 16 8 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 12 C 0.47 21.66 7.25 71.24 0.52 22.18 16 13 O -0.54 -26.36 15.21 21.98 0.33 -26.03 16 14 O -0.36 -13.65 10.09 -51.43 -0.52 -14.17 16 15 C 0.04 1.28 3.05 71.98 0.22 1.50 16 16 C -0.10 -2.63 2.86 -11.29 -0.03 -2.66 16 17 H 0.11 3.02 8.08 -2.39 -0.02 3.00 16 18 C -0.10 -2.02 5.48 30.21 0.17 -1.86 16 19 C -0.14 -2.25 5.18 29.79 0.15 -2.09 16 20 C -0.13 -1.63 5.74 30.19 0.17 -1.45 16 21 C 0.07 0.99 6.38 86.24 0.55 1.54 16 22 N -0.71 -12.91 5.27 -462.61 -2.44 -15.35 16 23 C 0.53 13.86 6.44 88.11 0.57 14.43 16 24 O -0.59 -20.29 17.92 -3.02 -0.05 -20.35 16 25 H 0.08 3.80 6.07 -2.38 -0.01 3.79 16 26 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.97 8.11 -2.39 -0.02 1.95 16 28 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 29 H 0.06 1.75 7.56 -2.38 -0.02 1.73 16 30 H 0.12 3.15 2.79 -2.39 -0.01 3.15 16 31 H 0.08 1.39 7.86 -2.39 -0.02 1.37 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.21 5.56 -2.39 -0.01 1.19 16 34 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.89 8.05 -2.38 -0.02 0.87 16 37 H 0.08 1.57 3.62 -2.39 -0.01 1.56 16 38 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.41 6.14 8.91 -92.71 -0.83 5.31 16 Total: -1.00 -67.98 308.91 3.43 -64.55 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.25 Total: 14.95 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 3.59 Total: 1.00 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -2.20 Total: -65.19 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -0.24 Total: -60.54 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -67.98 3.43 -64.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873611653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.157 kcal (2) G-P(sol) polarization free energy of solvation -67.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds