Wall clock time and date at job start Mon Mar 30 2020 01:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.47156 * 2 1 4 4 C 1.50707 * 109.47141 * 119.99434 * 2 1 3 5 5 H 1.07998 * 119.99815 * 119.99821 * 4 2 1 6 6 C 1.37879 * 119.99654 * 300.00494 * 4 2 1 7 7 N 1.31502 * 120.00324 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99583 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47315 * 59.99575 * 8 6 4 10 10 H 1.48497 * 109.47168 * 179.97438 * 8 6 4 11 11 H 1.48510 * 109.47225 * 299.99982 * 8 6 4 12 12 C 1.50699 * 109.47558 * 239.99670 * 2 1 3 13 13 O 1.20825 * 120.00046 * 240.00372 * 12 2 1 14 14 O 1.34229 * 119.99909 * 60.00114 * 12 2 1 15 15 C 1.45203 * 116.99814 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46722 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.63406 * 31.36181 * 16 15 14 18 18 C 1.53055 * 109.63660 * 270.75469 * 16 15 14 19 19 C 1.51819 * 110.72926 * 325.24532 * 18 16 15 20 20 C 1.51778 * 113.79938 * 293.15358 * 19 18 16 21 21 C 1.52985 * 110.87677 * 67.00893 * 20 19 18 22 22 N 1.47194 * 108.66988 * 273.54051 * 21 20 19 23 23 C 1.33372 * 120.42989 * 71.99197 * 22 21 20 24 24 O 1.21280 * 119.89300 * 179.68565 * 23 22 21 25 25 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47394 * 300.00291 * 1 2 3 27 27 H 1.09001 * 109.46568 * 60.00511 * 1 2 3 28 28 H 0.97003 * 120.00106 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47152 * 299.99638 * 15 14 12 30 30 H 1.08997 * 109.47011 * 60.00032 * 15 14 12 31 31 H 1.08998 * 109.22333 * 85.55050 * 18 16 15 32 32 H 1.09004 * 109.22345 * 204.89757 * 18 16 15 33 33 H 1.09000 * 108.61517 * 172.04726 * 19 18 16 34 34 H 1.09006 * 108.52620 * 54.20010 * 19 18 16 35 35 H 1.09000 * 109.19198 * 306.65417 * 20 19 18 36 36 H 1.08994 * 109.19984 * 187.36926 * 20 19 18 37 37 H 1.09005 * 109.60784 * 153.78472 * 21 20 19 38 38 H 1.08995 * 109.60701 * 33.29559 * 21 20 19 39 39 H 0.97003 * 119.78344 * 251.97393 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3212 -1.1200 4.0081 9 1 3.8063 -1.1206 4.0083 10 1 1.8268 -0.4195 5.2205 11 1 1.8257 -2.5200 4.0079 12 6 2.0324 -0.7105 -1.2304 13 8 2.7270 -1.6928 -1.1194 14 8 1.7082 -0.2519 -2.4495 15 6 2.2270 -0.9865 -3.5895 16 6 1.7551 -0.3200 -4.8833 17 1 1.6505 0.7534 -4.7253 18 6 0.4102 -0.9150 -5.3075 19 6 0.3406 -2.3904 -4.9564 20 6 1.3065 -3.2542 -5.7467 21 6 2.7551 -2.9343 -5.3729 22 7 3.2187 -1.8104 -6.2028 23 6 2.7624 -0.5763 -5.9844 24 8 3.1553 0.3435 -6.6704 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 0.7087 1.1615 3.4843 29 1 3.3165 -0.9862 -3.5567 30 1 1.8628 -2.0133 -3.5564 31 1 -0.3937 -0.3861 -4.7955 32 1 0.2885 -0.7957 -6.3841 33 1 -0.6736 -2.7445 -5.1409 34 1 0.5603 -2.5045 -3.8948 35 1 1.1623 -3.0710 -6.8114 36 1 1.1050 -4.3040 -5.5339 37 1 3.3816 -3.8072 -5.5565 38 1 2.8086 -2.6578 -4.3200 39 1 3.8603 -1.9684 -6.9129 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873611654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:29 Heat of formation + Delta-G solvation = -137.456172 kcal Electronic energy + Delta-G solvation = -21492.822453 eV Core-core repulsion = 18207.013653 eV Total energy + Delta-G solvation = -3285.808800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.13853 -41.00578 -38.41554 -37.23831 -35.90210 -35.03093 -32.86682 -32.41133 -29.28109 -27.26135 -26.20123 -25.10488 -24.62464 -22.25888 -20.90342 -20.40214 -18.64630 -18.39875 -18.20853 -17.96134 -17.34260 -16.95984 -16.36328 -16.02763 -15.31699 -15.26289 -14.93529 -14.68313 -14.60191 -14.29328 -13.97424 -13.60609 -13.23803 -12.97328 -12.79928 -12.76751 -12.66078 -12.56901 -12.26491 -12.03973 -11.89385 -11.80628 -11.63036 -11.26444 -11.10126 -10.98939 -10.79845 -10.51134 -10.13613 -8.18213 -6.31668 1.34868 1.43265 1.44790 1.46712 1.54202 1.86826 2.27217 2.45569 3.12102 3.33561 3.50091 3.61008 3.79160 3.95824 4.02888 4.18841 4.31102 4.32969 4.35953 4.56731 4.71380 4.73511 4.77112 4.92571 4.95038 5.01744 5.06332 5.13289 5.21777 5.40083 5.40841 5.48577 5.70676 5.79559 5.91066 6.10947 6.12317 6.74650 7.04101 7.09142 7.37231 8.87936 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031952 B = 0.004381 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.117558 B = 6389.190370 C = 6484.960336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.048 3.952 3 H 0.047 0.953 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.276 1.276 11 H -0.271 1.271 12 C 0.475 3.525 13 O -0.539 6.539 14 O -0.360 6.360 15 C 0.043 3.957 16 C -0.103 4.103 17 H 0.107 0.893 18 C -0.104 4.104 19 C -0.139 4.139 20 C -0.135 4.135 21 C 0.069 3.931 22 N -0.706 5.706 23 C 0.530 3.470 24 O -0.591 6.591 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.268 0.732 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 -8.540 -16.262 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.029 3.971 3 H 0.065 0.935 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.201 1.201 11 H -0.196 1.196 12 C 0.320 3.680 13 O -0.428 6.428 14 O -0.277 6.277 15 C -0.030 4.030 16 C -0.125 4.125 17 H 0.125 0.875 18 C -0.142 4.142 19 C -0.176 4.176 20 C -0.173 4.173 21 C -0.053 4.053 22 N -0.357 5.357 23 C 0.316 3.684 24 O -0.472 6.472 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.687 -8.238 -16.327 18.366 hybrid contribution 0.830 -0.188 0.615 1.050 sum -0.857 -8.426 -15.713 17.850 Atomic orbital electron populations 1.21551 0.94131 1.00109 1.01971 1.18696 0.96141 0.96016 0.86270 0.93548 1.21229 1.32661 1.13330 0.90397 0.92328 1.25636 0.94899 0.95634 1.01589 1.69954 1.36652 1.23394 1.24773 0.85533 0.78626 0.78783 0.78250 1.20088 1.20098 1.19610 1.24782 0.76056 0.82598 0.84569 1.90465 1.37276 1.27679 1.87375 1.86580 1.69956 1.56093 1.15118 1.24120 0.98401 0.97601 0.82860 1.21591 0.96593 1.03686 0.90586 0.87498 1.21304 0.93883 0.96669 1.02310 1.21389 1.01827 0.93876 1.00510 1.21799 0.92917 1.01348 1.01216 1.22694 0.97116 0.89453 0.96083 1.45865 1.45679 1.07295 1.36861 1.20313 0.80928 0.82837 0.84298 1.90735 1.60467 1.44643 1.51379 0.94823 0.90601 0.93202 0.92305 0.92594 0.86170 0.89647 0.90369 0.89278 0.92202 0.90362 0.88076 0.86069 0.90030 0.75199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.90 71.98 0.64 -4.85 16 2 C 0.05 2.42 2.74 -12.29 -0.03 2.38 16 3 H 0.05 2.48 8.14 -2.38 -0.02 2.47 16 4 C -0.54 -30.05 8.37 25.60 0.21 -29.83 16 5 H 0.06 3.40 6.76 -2.91 -0.02 3.38 16 6 C 0.02 1.21 5.30 84.66 0.45 1.66 16 7 N -0.91 -50.09 11.32 21.45 0.24 -49.84 16 8 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 C 0.47 21.66 7.25 71.24 0.52 22.17 16 13 O -0.54 -26.32 15.21 21.97 0.33 -25.98 16 14 O -0.36 -13.65 10.09 -51.41 -0.52 -14.17 16 15 C 0.04 1.27 3.05 71.98 0.22 1.49 16 16 C -0.10 -2.63 2.86 -11.29 -0.03 -2.66 16 17 H 0.11 3.02 8.08 -2.39 -0.02 3.00 16 18 C -0.10 -2.02 5.48 30.22 0.17 -1.86 16 19 C -0.14 -2.25 5.19 29.80 0.15 -2.09 16 20 C -0.13 -1.63 5.74 30.19 0.17 -1.46 16 21 C 0.07 0.99 6.38 86.24 0.55 1.54 16 22 N -0.71 -12.90 5.27 -462.60 -2.44 -15.34 16 23 C 0.53 13.86 6.45 88.11 0.57 14.43 16 24 O -0.59 -20.29 17.92 -3.03 -0.05 -20.35 16 25 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 3.80 6.07 -2.39 -0.01 3.79 16 27 H 0.05 1.97 8.11 -2.39 -0.02 1.95 16 28 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.06 1.75 7.57 -2.39 -0.02 1.73 16 30 H 0.12 3.15 2.78 -2.39 -0.01 3.15 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.39 7.86 -2.38 -0.02 1.37 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.21 5.55 -2.38 -0.01 1.19 16 35 H 0.08 0.89 8.05 -2.39 -0.02 0.87 16 36 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.08 1.57 3.62 -2.39 -0.01 1.56 16 39 H 0.41 6.13 8.91 -92.71 -0.83 5.31 16 Total: -1.00 -67.82 308.90 3.43 -64.39 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.25 Total: 15.16 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 3.59 Total: 0.92 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -2.20 Total: -65.18 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -0.24 Total: -60.49 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -67.82 3.43 -64.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873611654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.068 kcal (2) G-P(sol) polarization free energy of solvation -67.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds