Wall clock time and date at job start Mon Mar 30 2020 01:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47565 * 2 1 4 4 C 1.50700 * 109.47126 * 120.00534 * 2 1 3 5 5 H 1.08002 * 120.00059 * 92.65487 * 4 2 1 6 6 C 1.37874 * 119.99971 * 272.64675 * 4 2 1 7 7 N 1.31514 * 120.00358 * 174.16523 * 6 4 2 8 8 Si 1.86809 * 119.99902 * 354.16801 * 6 4 2 9 9 H 1.48493 * 109.47227 * 275.46379 * 8 6 4 10 10 H 1.48500 * 109.47095 * 35.46582 * 8 6 4 11 11 H 1.48503 * 109.46753 * 155.46510 * 8 6 4 12 12 C 1.50705 * 109.47091 * 240.00182 * 2 1 3 13 13 O 1.20821 * 120.00179 * 240.00360 * 12 2 1 14 14 O 1.34231 * 119.99710 * 59.99805 * 12 2 1 15 15 C 1.45202 * 116.99850 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.46964 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.62979 * 328.71883 * 16 15 14 18 18 C 1.53058 * 109.63682 * 89.32398 * 16 15 14 19 19 C 1.51763 * 110.76168 * 34.80482 * 18 16 15 20 20 C 1.51779 * 113.82734 * 66.78054 * 19 18 16 21 21 C 1.52986 * 110.88102 * 293.01459 * 20 19 18 22 22 N 1.47202 * 108.66237 * 86.46115 * 21 20 19 23 23 C 1.33373 * 120.43167 * 288.05154 * 22 21 20 24 24 O 1.21279 * 119.88951 * 180.27876 * 23 22 21 25 25 H 1.09002 * 109.47156 * 54.89593 * 1 2 3 26 26 H 1.08994 * 109.47410 * 174.90111 * 1 2 3 27 27 H 1.09004 * 109.46950 * 294.90203 * 1 2 3 28 28 H 0.96993 * 120.00383 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47188 * 300.00236 * 15 14 12 30 30 H 1.09001 * 109.46772 * 60.00297 * 15 14 12 31 31 H 1.09004 * 109.22173 * 155.10501 * 18 16 15 32 32 H 1.09003 * 109.22129 * 274.45324 * 18 16 15 33 33 H 1.08996 * 108.59584 * 305.66663 * 19 18 16 34 34 H 1.09007 * 108.50897 * 187.83423 * 19 18 16 35 35 H 1.09002 * 109.19647 * 172.65970 * 20 19 18 36 36 H 1.08995 * 109.15846 * 53.35294 * 20 19 18 37 37 H 1.09003 * 109.60718 * 326.71249 * 21 20 19 38 38 H 1.09001 * 109.74188 * 206.29313 * 21 20 19 39 39 H 0.97000 * 119.78163 * 108.03577 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.2531 -1.7670 1.1916 6 6 2.2101 -0.0118 2.4056 7 7 2.5376 -0.6508 3.5075 8 14 1.9857 1.8425 2.4329 9 1 3.2469 2.5001 2.0061 10 1 0.8907 2.2223 1.5045 11 1 1.6412 2.2792 3.8098 12 6 2.0323 -0.7104 -1.2305 13 8 2.7269 -1.6928 -1.1197 14 8 1.7080 -0.2517 -2.4496 15 6 2.2266 -0.9862 -3.5897 16 6 1.7556 -0.3189 -4.8834 17 1 0.7795 0.1395 -4.7246 18 6 2.7665 0.7486 -5.3091 19 6 4.1801 0.3202 -4.9607 20 6 4.6692 -0.8802 -5.7504 21 6 3.8831 -2.1375 -5.3741 22 7 2.6677 -2.1986 -6.2022 23 6 1.6584 -1.3544 -5.9840 24 8 0.6595 -1.4168 -6.6689 25 1 -0.3633 0.5910 -0.8408 26 1 -0.3634 -1.0235 -0.0913 27 1 -0.3633 0.4327 0.9322 28 1 2.6623 -0.1593 4.3343 29 1 3.3161 -0.9860 -3.5570 30 1 1.8623 -2.0130 -3.5566 31 1 2.6938 0.9027 -6.3858 32 1 2.5382 1.6835 -4.7973 33 1 4.2179 0.0770 -3.8989 34 1 4.8519 1.1578 -5.1490 35 1 5.7263 -1.0418 -5.5389 36 1 4.5428 -0.6836 -6.8150 37 1 3.6061 -2.0941 -4.3208 38 1 4.4941 -3.0218 -5.5555 39 1 2.6005 -2.8569 -6.9115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873611655.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:32 Heat of formation + Delta-G solvation = -114.976228 kcal Electronic energy + Delta-G solvation = -21521.841610 eV Core-core repulsion = 18237.007614 eV Total energy + Delta-G solvation = -3284.833996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07135 -39.51131 -37.33058 -35.79546 -34.12310 -33.85756 -31.82008 -31.31104 -28.35180 -25.30190 -25.15180 -24.24643 -23.08712 -20.94539 -19.57369 -19.33578 -17.52030 -17.33509 -16.97780 -16.32788 -16.19237 -15.39690 -15.05659 -14.45111 -14.39092 -14.07369 -13.99107 -13.65287 -13.23323 -12.92548 -12.66223 -12.35064 -12.14868 -11.91749 -11.80659 -11.35672 -11.17143 -11.06131 -10.96886 -10.73612 -10.60576 -10.44905 -10.14021 -9.89584 -9.79239 -9.28035 -9.27364 -9.23912 -8.66518 -6.17424 -4.19388 2.42174 3.02606 3.11522 3.20981 3.29062 3.30120 3.36333 4.23550 4.30525 4.46556 4.50347 4.55625 4.80095 4.88925 5.08323 5.13836 5.17381 5.23028 5.33619 5.51609 5.53640 5.65939 5.73812 5.80304 5.89205 5.99468 6.11691 6.13095 6.43123 6.47887 6.59489 6.77444 7.00716 7.03980 7.18129 7.45483 8.03471 8.34960 8.70079 8.96531 9.40139 10.94889 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.004732 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.497178 B = 5916.099952 C = 6012.226723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.027 3.973 3 H 0.063 0.937 4 C -0.511 4.511 5 H 0.089 0.911 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.867 3.133 9 H -0.273 1.273 10 H -0.259 1.259 11 H -0.284 1.284 12 C 0.466 3.534 13 O -0.503 6.503 14 O -0.365 6.365 15 C 0.044 3.956 16 C -0.107 4.107 17 H 0.121 0.879 18 C -0.107 4.107 19 C -0.140 4.140 20 C -0.139 4.139 21 C 0.072 3.928 22 N -0.721 5.721 23 C 0.530 3.470 24 O -0.548 6.548 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.267 0.733 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.464 2.201 -18.157 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.007 3.993 3 H 0.081 0.919 4 C -0.548 4.548 5 H 0.107 0.893 6 C -0.126 4.126 7 N -0.526 5.526 8 Si 0.693 3.307 9 H -0.199 1.199 10 H -0.184 1.184 11 H -0.210 1.210 12 C 0.310 3.690 13 O -0.388 6.388 14 O -0.284 6.284 15 C -0.029 4.029 16 C -0.128 4.128 17 H 0.139 0.861 18 C -0.145 4.145 19 C -0.177 4.177 20 C -0.177 4.177 21 C -0.051 4.051 22 N -0.373 5.373 23 C 0.316 3.684 24 O -0.425 6.425 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.225 2.016 -18.129 18.524 hybrid contribution 0.134 0.528 -0.165 0.569 sum 3.358 2.544 -18.294 18.773 Atomic orbital electron populations 1.21970 0.95874 1.00918 1.00615 1.19136 0.94711 0.97031 0.88431 0.91911 1.20776 1.44840 0.98226 0.90985 0.89261 1.24948 0.94201 0.98154 0.95258 1.69869 1.46802 1.36063 0.99828 0.87028 0.79465 0.86269 0.77902 1.19881 1.18355 1.20998 1.25005 0.77052 0.83473 0.83508 1.90537 1.35507 1.26127 1.86644 1.86630 1.70632 1.55847 1.15279 1.23767 1.00379 0.95195 0.83590 1.21637 1.03641 0.95819 0.91708 0.86139 1.21272 0.93286 0.98127 1.01791 1.21366 0.96394 0.98368 1.01538 1.21802 1.00228 0.94621 1.01090 1.22542 0.85763 0.99109 0.97701 1.45903 1.17644 1.36647 1.37125 1.20287 0.82154 0.81298 0.84646 1.90753 1.30653 1.71337 1.49769 0.94354 0.93211 0.92071 0.92275 0.88079 0.91554 0.91340 0.89780 0.90380 0.91048 0.90226 0.91174 0.87952 0.89179 0.76341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.82 37.16 0.33 -2.46 16 2 C 0.03 0.61 2.30 -92.92 -0.21 0.40 16 3 H 0.06 1.40 5.74 -51.93 -0.30 1.10 16 4 C -0.51 -14.21 8.48 -34.44 -0.29 -14.50 16 5 H 0.09 2.80 7.40 -52.49 -0.39 2.42 16 6 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 7 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 8 Si 0.87 20.14 26.34 -169.99 -4.48 15.67 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.26 -5.59 6.38 56.52 0.36 -5.23 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.47 10.15 7.25 36.01 0.26 10.41 16 13 O -0.50 -12.13 15.40 -18.75 -0.29 -12.42 16 14 O -0.37 -6.54 10.11 -39.26 -0.40 -6.94 16 15 C 0.04 0.63 3.05 37.16 0.11 0.75 16 16 C -0.11 -1.32 2.86 -91.38 -0.26 -1.58 16 17 H 0.12 1.58 8.08 -51.93 -0.42 1.16 16 18 C -0.11 -1.07 5.48 -27.33 -0.15 -1.22 16 19 C -0.14 -1.25 5.18 -27.98 -0.15 -1.40 16 20 C -0.14 -1.04 5.74 -27.36 -0.16 -1.20 16 21 C 0.07 0.60 6.38 -3.67 -0.02 0.57 16 22 N -0.72 -7.03 5.27 -59.89 -0.32 -7.34 16 23 C 0.53 6.89 6.44 -11.25 -0.07 6.81 16 24 O -0.55 -9.14 17.92 5.56 0.10 -9.04 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.26 7.14 -51.93 -0.37 0.89 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.10 1.33 2.79 -51.93 -0.14 1.19 16 30 H 0.07 1.00 7.56 -51.93 -0.39 0.61 16 31 H 0.07 0.65 7.86 -51.93 -0.41 0.24 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.83 5.56 -51.93 -0.29 0.54 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 37 H 0.10 1.05 3.62 -51.93 -0.19 0.86 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.40 3.30 8.91 -40.82 -0.36 2.94 16 LS Contribution 306.91 15.07 4.63 4.63 Total: -1.00 -33.05 306.91 -6.08 -39.13 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.39 Total: 3.38 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -0.71 Total: -1.35 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.46 Total: -33.06 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.59 Total: -28.41 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.48 Total: 15.67 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.05 -6.08 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873611655.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.842 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds