Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47565 * 2 1 4 4 C 1.50700 * 109.47126 * 120.00534 * 2 1 3 5 5 H 1.08002 * 120.00059 * 92.65487 * 4 2 1 6 6 C 1.37874 * 119.99971 * 272.64675 * 4 2 1 7 7 N 1.31514 * 120.00358 * 174.16523 * 6 4 2 8 8 Si 1.86809 * 119.99902 * 354.16801 * 6 4 2 9 9 H 1.48493 * 109.47227 * 275.46379 * 8 6 4 10 10 H 1.48500 * 109.47095 * 35.46582 * 8 6 4 11 11 H 1.48503 * 109.46753 * 155.46510 * 8 6 4 12 12 C 1.50705 * 109.47091 * 240.00182 * 2 1 3 13 13 O 1.20821 * 120.00179 * 240.00360 * 12 2 1 14 14 O 1.34231 * 119.99710 * 59.99805 * 12 2 1 15 15 C 1.45202 * 116.99850 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.46964 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.62979 * 328.71883 * 16 15 14 18 18 C 1.53058 * 109.63682 * 89.32398 * 16 15 14 19 19 C 1.51763 * 110.76168 * 34.80482 * 18 16 15 20 20 C 1.51779 * 113.82734 * 66.78054 * 19 18 16 21 21 C 1.52986 * 110.88102 * 293.01459 * 20 19 18 22 22 N 1.47202 * 108.66237 * 86.46115 * 21 20 19 23 23 C 1.33373 * 120.43167 * 288.05154 * 22 21 20 24 24 O 1.21279 * 119.88951 * 180.27876 * 23 22 21 25 25 H 1.09002 * 109.47156 * 54.89593 * 1 2 3 26 26 H 1.08994 * 109.47410 * 174.90111 * 1 2 3 27 27 H 1.09004 * 109.46950 * 294.90203 * 1 2 3 28 28 H 0.96993 * 120.00383 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47188 * 300.00236 * 15 14 12 30 30 H 1.09001 * 109.46772 * 60.00297 * 15 14 12 31 31 H 1.09004 * 109.22173 * 155.10501 * 18 16 15 32 32 H 1.09003 * 109.22129 * 274.45324 * 18 16 15 33 33 H 1.08996 * 108.59584 * 305.66663 * 19 18 16 34 34 H 1.09007 * 108.50897 * 187.83423 * 19 18 16 35 35 H 1.09002 * 109.19647 * 172.65970 * 20 19 18 36 36 H 1.08995 * 109.15846 * 53.35294 * 20 19 18 37 37 H 1.09003 * 109.60718 * 326.71249 * 21 20 19 38 38 H 1.09001 * 109.74188 * 206.29313 * 21 20 19 39 39 H 0.97000 * 119.78163 * 108.03577 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.2531 -1.7670 1.1916 6 6 2.2101 -0.0118 2.4056 7 7 2.5376 -0.6508 3.5075 8 14 1.9857 1.8425 2.4329 9 1 3.2469 2.5001 2.0061 10 1 0.8907 2.2223 1.5045 11 1 1.6412 2.2792 3.8098 12 6 2.0323 -0.7104 -1.2305 13 8 2.7269 -1.6928 -1.1197 14 8 1.7080 -0.2517 -2.4496 15 6 2.2266 -0.9862 -3.5897 16 6 1.7556 -0.3189 -4.8834 17 1 0.7795 0.1395 -4.7246 18 6 2.7665 0.7486 -5.3091 19 6 4.1801 0.3202 -4.9607 20 6 4.6692 -0.8802 -5.7504 21 6 3.8831 -2.1375 -5.3741 22 7 2.6677 -2.1986 -6.2022 23 6 1.6584 -1.3544 -5.9840 24 8 0.6595 -1.4168 -6.6689 25 1 -0.3633 0.5910 -0.8408 26 1 -0.3634 -1.0235 -0.0913 27 1 -0.3633 0.4327 0.9322 28 1 2.6623 -0.1593 4.3343 29 1 3.3161 -0.9860 -3.5570 30 1 1.8623 -2.0130 -3.5566 31 1 2.6938 0.9027 -6.3858 32 1 2.5382 1.6835 -4.7973 33 1 4.2179 0.0770 -3.8989 34 1 4.8519 1.1578 -5.1490 35 1 5.7263 -1.0418 -5.5389 36 1 4.5428 -0.6836 -6.8150 37 1 3.6061 -2.0941 -4.3208 38 1 4.4941 -3.0218 -5.5555 39 1 2.6005 -2.8569 -6.9115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873611655.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = -138.374847 kcal Electronic energy + Delta-G solvation = -21522.856250 eV Core-core repulsion = 18237.007614 eV Total energy + Delta-G solvation = -3285.848636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.14582 -41.03916 -38.42139 -37.25246 -35.80350 -35.03355 -33.43010 -32.60165 -29.31862 -27.26376 -26.25365 -25.10408 -24.63321 -22.14694 -20.86214 -20.38840 -19.21911 -18.45869 -18.11007 -18.01648 -17.63028 -16.78217 -16.34079 -16.03843 -15.30139 -15.19609 -15.07388 -14.65541 -14.55922 -14.39408 -14.10164 -13.95758 -13.36704 -13.15270 -12.95680 -12.79362 -12.64775 -12.57863 -12.27248 -11.90110 -11.80872 -11.73409 -11.63322 -11.30094 -11.26828 -11.01840 -10.81321 -10.73499 -10.13790 -8.30360 -6.39804 1.33624 1.36368 1.40947 1.45328 1.53425 1.82655 2.27256 2.35295 3.04697 3.33086 3.49232 3.61048 3.78506 3.95709 4.01456 4.14626 4.28042 4.32093 4.35054 4.37140 4.53211 4.67572 4.72918 4.75293 4.87148 4.94892 5.04186 5.08439 5.13553 5.21659 5.37685 5.40243 5.49721 5.52392 5.78763 6.11625 6.22368 6.70069 7.00202 7.09137 7.24907 8.86267 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.004732 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.497178 B = 5916.099952 C = 6012.226723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.020 3.980 3 H 0.082 0.918 4 C -0.522 4.522 5 H 0.033 0.967 6 C 0.018 3.982 7 N -0.943 5.943 8 Si 0.938 3.062 9 H -0.263 1.263 10 H -0.225 1.225 11 H -0.284 1.284 12 C 0.473 3.527 13 O -0.536 6.536 14 O -0.356 6.356 15 C 0.042 3.958 16 C -0.102 4.102 17 H 0.112 0.888 18 C -0.104 4.104 19 C -0.140 4.140 20 C -0.135 4.135 21 C 0.069 3.931 22 N -0.707 5.707 23 C 0.529 3.471 24 O -0.590 6.590 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.270 0.730 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.855 4.391 -20.053 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.000 4.000 3 H 0.099 0.901 4 C -0.559 4.559 5 H 0.051 0.949 6 C -0.180 4.180 7 N -0.581 5.581 8 Si 0.759 3.241 9 H -0.187 1.187 10 H -0.148 1.148 11 H -0.209 1.209 12 C 0.317 3.683 13 O -0.425 6.425 14 O -0.273 6.273 15 C -0.031 4.031 16 C -0.123 4.123 17 H 0.130 0.870 18 C -0.142 4.142 19 C -0.177 4.177 20 C -0.173 4.173 21 C -0.054 4.054 22 N -0.358 5.358 23 C 0.315 3.685 24 O -0.472 6.472 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.137 0.863 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.631 4.194 -20.065 20.818 hybrid contribution 0.065 -0.295 0.355 0.466 sum 3.696 3.899 -19.710 20.429 Atomic orbital electron populations 1.21885 0.93541 1.01282 1.02167 1.19103 0.96432 0.97271 0.87163 0.90054 1.20845 1.45255 0.96201 0.93637 0.94903 1.25922 0.93533 1.04196 0.94315 1.70038 1.48638 1.38655 1.00818 0.85904 0.80877 0.78630 0.78695 1.18747 1.14751 1.20932 1.24617 0.76364 0.82752 0.84529 1.90529 1.37048 1.27560 1.87338 1.86554 1.70237 1.55667 1.14853 1.24122 1.01528 0.94516 0.82900 1.21596 1.04039 0.96308 0.90353 0.86972 1.21305 0.93175 0.97316 1.02379 1.21387 0.96062 0.99751 1.00515 1.21795 1.01032 0.93237 1.01246 1.22682 0.85343 1.01221 0.96122 1.45883 1.17339 1.35620 1.36956 1.20353 0.82146 0.81597 0.84357 1.90736 1.32390 1.72624 1.51415 0.90819 0.93990 0.91994 0.92066 0.86390 0.92630 0.90407 0.89276 0.92169 0.89285 0.88266 0.90353 0.90041 0.86295 0.75263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.82 71.98 0.63 -4.47 16 2 C 0.02 0.90 2.30 -12.29 -0.03 0.87 16 3 H 0.08 3.39 5.74 -2.38 -0.01 3.38 16 4 C -0.52 -29.78 8.48 25.60 0.22 -29.56 16 5 H 0.03 2.19 7.40 -2.91 -0.02 2.16 16 6 C 0.02 1.04 5.47 84.65 0.46 1.50 16 7 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 8 Si 0.94 40.50 26.34 68.60 1.81 42.31 16 9 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 10 H -0.23 -8.44 6.38 99.48 0.63 -7.81 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 C 0.47 20.46 7.25 71.24 0.52 20.98 16 13 O -0.54 -26.53 15.40 21.98 0.34 -26.19 16 14 O -0.36 -12.29 10.11 -51.42 -0.52 -12.81 16 15 C 0.04 1.17 3.05 71.98 0.22 1.39 16 16 C -0.10 -2.38 2.86 -11.29 -0.03 -2.41 16 17 H 0.11 2.83 8.08 -2.39 -0.02 2.81 16 18 C -0.10 -1.83 5.48 30.21 0.17 -1.67 16 19 C -0.14 -2.13 5.18 29.79 0.15 -1.97 16 20 C -0.14 -1.59 5.74 30.19 0.17 -1.42 16 21 C 0.07 0.98 6.38 86.24 0.55 1.53 16 22 N -0.71 -12.54 5.27 -462.58 -2.44 -14.98 16 23 C 0.53 13.18 6.44 88.11 0.57 13.75 16 24 O -0.59 -19.49 17.92 -3.03 -0.05 -19.54 16 25 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 2.39 7.14 -2.38 -0.02 2.37 16 28 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.12 2.98 2.79 -2.39 -0.01 2.98 16 30 H 0.06 1.67 7.56 -2.39 -0.02 1.66 16 31 H 0.08 1.26 7.86 -2.38 -0.02 1.24 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.15 5.56 -2.39 -0.01 1.14 16 34 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.86 8.05 -2.39 -0.02 0.84 16 37 H 0.08 1.55 3.62 -2.39 -0.01 1.55 16 38 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.41 6.00 8.91 -92.71 -0.83 5.17 16 Total: -1.00 -74.73 306.91 3.21 -71.52 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.18 Total: 18.82 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 3.60 Total: -1.49 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -2.14 Total: -72.62 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -0.24 Total: -58.54 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.81 Total: 42.31 kcal Total: -74.73 3.21 -71.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873611655.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.854 kcal (2) G-P(sol) polarization free energy of solvation -74.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds