Wall clock time and date at job start Mon Mar 30 2020 01:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47533 * 2 1 4 4 C 1.50698 * 109.46744 * 239.99948 * 2 1 3 5 5 H 1.08007 * 120.00164 * 239.72756 * 4 2 1 6 6 C 1.37879 * 120.00161 * 60.00284 * 4 2 1 7 7 N 1.31511 * 119.99763 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00098 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47187 * 89.99704 * 8 6 4 10 10 H 1.48491 * 109.47098 * 210.00469 * 8 6 4 11 11 H 1.48508 * 109.47057 * 330.00156 * 8 6 4 12 12 C 1.50700 * 109.47033 * 120.00096 * 2 1 3 13 13 O 1.20822 * 119.99956 * 119.99396 * 12 2 1 14 14 O 1.34226 * 120.00204 * 300.00214 * 12 2 1 15 15 C 1.45198 * 117.00343 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47445 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.63106 * 31.35097 * 16 15 14 18 18 C 1.53070 * 109.63166 * 270.75321 * 16 15 14 19 19 C 1.51816 * 110.72633 * 325.24118 * 18 16 15 20 20 C 1.51775 * 113.79943 * 293.15350 * 19 18 16 21 21 C 1.52994 * 110.87896 * 67.01326 * 20 19 18 22 22 N 1.47195 * 108.66726 * 273.54063 * 21 20 19 23 23 C 1.33371 * 120.43076 * 71.98992 * 22 21 20 24 24 O 1.21279 * 119.89500 * 179.68277 * 23 22 21 25 25 H 1.08998 * 109.47071 * 59.99585 * 1 2 3 26 26 H 1.08999 * 109.47533 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46960 * 300.00119 * 1 2 3 28 28 H 0.96999 * 119.99798 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46691 * 299.99477 * 15 14 12 30 30 H 1.09002 * 109.47273 * 59.99106 * 15 14 12 31 31 H 1.08992 * 109.22105 * 85.53980 * 18 16 15 32 32 H 1.09002 * 109.22034 * 204.89412 * 18 16 15 33 33 H 1.09004 * 108.61110 * 172.04512 * 19 18 16 34 34 H 1.08999 * 108.52850 * 54.20089 * 19 18 16 35 35 H 1.09003 * 109.19724 * 306.65520 * 20 19 18 36 36 H 1.08997 * 109.19974 * 187.37312 * 20 19 18 37 37 H 1.09000 * 109.60525 * 153.78852 * 21 20 19 38 38 H 1.09001 * 109.60311 * 33.28989 * 21 20 19 39 39 H 0.96999 * 119.78756 * 251.97140 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6568 -1.5860 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4872 -0.1403 -5.1120 11 1 3.6307 -1.7568 -3.7120 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7080 -0.2519 2.4496 15 6 2.2276 -0.9858 3.5896 16 6 1.7565 -0.3187 4.8834 17 1 0.7794 0.1378 4.7253 18 6 2.7659 0.7510 5.3076 19 6 4.1800 0.3247 4.9565 20 6 4.6724 -0.8739 5.7468 21 6 3.8878 -2.1331 5.3731 22 7 2.6737 -2.1953 6.2030 23 6 1.6623 -1.3538 5.9846 24 8 0.6642 -1.4175 6.6705 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7096 1.1619 -3.4844 29 1 1.8641 -2.0129 3.5568 30 1 3.3171 -0.9848 3.5565 31 1 2.5353 1.6851 4.7954 32 1 2.6939 0.9055 6.3842 33 1 4.8520 1.1629 5.1409 34 1 4.2144 0.0794 3.8950 35 1 4.5477 -0.6768 6.8116 36 1 5.7294 -1.0339 5.5341 37 1 4.5020 -3.0146 5.5569 38 1 3.6093 -2.0913 4.3201 39 1 2.6086 -2.8529 6.9131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873611656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:34 Heat of formation + Delta-G solvation = -117.181796 kcal Electronic energy + Delta-G solvation = -21463.968815 eV Core-core repulsion = 18179.039178 eV Total energy + Delta-G solvation = -3284.929637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.02462 -39.41549 -37.28636 -35.72228 -34.07668 -33.90511 -31.75010 -30.59773 -28.26829 -25.23500 -25.04858 -24.20405 -22.99680 -20.96886 -19.55417 -19.37242 -17.47228 -17.12331 -16.61938 -16.20366 -15.98236 -15.37564 -14.99564 -14.46929 -14.36463 -14.04243 -13.92946 -13.62684 -13.16305 -12.81010 -12.62767 -12.20495 -11.90875 -11.76427 -11.44914 -11.08990 -11.03216 -10.93103 -10.78833 -10.71287 -10.54025 -10.34977 -10.12161 -10.03795 -9.74722 -9.23170 -9.14448 -9.06299 -8.46947 -6.12460 -4.18153 2.46476 3.07236 3.24589 3.29148 3.34404 3.37246 3.47850 4.27916 4.38785 4.50444 4.54138 4.62207 4.83960 4.94223 5.12493 5.20204 5.20932 5.26289 5.38566 5.55584 5.58201 5.69710 5.78753 5.87364 5.96105 6.13372 6.17599 6.62727 6.65128 6.85348 6.86776 7.05415 7.16584 7.41618 7.72499 7.92314 8.07088 8.11885 8.79437 8.90860 9.47547 10.94889 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031463 B = 0.004421 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.729037 B = 6332.435294 C = 6579.361083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.466 3.534 13 O -0.519 6.519 14 O -0.362 6.362 15 C 0.044 3.956 16 C -0.107 4.107 17 H 0.121 0.879 18 C -0.107 4.107 19 C -0.139 4.139 20 C -0.139 4.139 21 C 0.073 3.927 22 N -0.721 5.721 23 C 0.530 3.470 24 O -0.548 6.548 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 -1.303 15.532 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.311 3.689 13 O -0.406 6.406 14 O -0.281 6.281 15 C -0.029 4.029 16 C -0.128 4.128 17 H 0.139 0.861 18 C -0.145 4.145 19 C -0.176 4.176 20 C -0.177 4.177 21 C -0.051 4.051 22 N -0.374 5.374 23 C 0.316 3.684 24 O -0.425 6.425 25 H 0.115 0.885 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 6.143 -1.376 15.582 16.806 hybrid contribution 0.422 -0.858 -0.469 1.065 sum 6.565 -2.234 15.113 16.628 Atomic orbital electron populations 1.21741 0.95579 1.00086 1.01805 1.18771 0.94886 0.96983 0.85494 0.91764 1.21124 1.31855 1.13374 0.88766 0.90651 1.24936 0.94920 0.94978 0.99131 1.69877 1.36522 1.22704 1.23884 0.86382 0.79425 0.79227 0.81773 1.20526 1.21132 1.19693 1.25388 0.76487 0.83208 0.83862 1.90486 1.36545 1.26738 1.86796 1.86649 1.70469 1.55681 1.15268 1.23732 1.00231 0.95167 0.83789 1.21636 1.03712 0.95769 0.91690 0.86106 1.21278 0.93247 0.98181 1.01750 1.21371 0.96415 0.98329 1.01506 1.21807 1.00157 0.94674 1.01110 1.22541 0.85799 0.99045 0.97702 1.45898 1.17617 1.36840 1.37007 1.20305 0.82120 0.81280 0.84668 1.90752 1.30739 1.71261 1.49751 0.88540 0.95003 0.95704 0.92672 0.91728 0.88200 0.89705 0.91375 0.91053 0.90394 0.91187 0.90298 0.89268 0.87937 0.76386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.90 37.16 0.33 -2.83 16 2 C 0.06 1.43 2.74 -92.92 -0.25 1.18 16 3 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 4 C -0.51 -14.14 8.37 -34.44 -0.29 -14.42 16 5 H 0.08 2.16 6.76 -52.48 -0.35 1.80 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.49 11.32 55.43 0.63 -23.87 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.47 10.55 7.25 36.01 0.26 10.82 16 13 O -0.52 -12.59 15.21 -18.75 -0.29 -12.87 16 14 O -0.36 -6.89 10.09 -39.25 -0.40 -7.28 16 15 C 0.04 0.67 3.05 37.16 0.11 0.78 16 16 C -0.11 -1.39 2.86 -91.38 -0.26 -1.65 16 17 H 0.12 1.69 8.08 -51.93 -0.42 1.27 16 18 C -0.11 -1.12 5.48 -27.30 -0.15 -1.27 16 19 C -0.14 -1.29 5.19 -27.95 -0.15 -1.44 16 20 C -0.14 -1.07 5.74 -27.36 -0.16 -1.23 16 21 C 0.07 0.62 6.39 -3.67 -0.02 0.59 16 22 N -0.72 -7.27 5.27 -59.90 -0.32 -7.58 16 23 C 0.53 7.14 6.45 -11.25 -0.07 7.07 16 24 O -0.55 -9.41 17.92 5.56 0.10 -9.31 16 25 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 29 H 0.06 1.02 7.57 -51.93 -0.39 0.62 16 30 H 0.10 1.36 2.78 -51.93 -0.14 1.22 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.67 7.86 -51.93 -0.41 0.26 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.85 5.55 -51.93 -0.29 0.57 16 35 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 1.08 3.62 -51.93 -0.19 0.89 16 39 H 0.40 3.41 8.91 -40.82 -0.36 3.04 16 LS Contribution 308.90 15.07 4.66 4.66 Total: -1.00 -31.51 308.90 -6.76 -38.27 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.39 Total: 2.69 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.74 Total: -0.83 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.31 Total: -31.45 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.58 Total: -29.46 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.51 -6.76 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873611656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.912 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds