Wall clock time and date at job start Mon Mar 30 2020 01:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47533 * 2 1 4 4 C 1.50698 * 109.46744 * 239.99948 * 2 1 3 5 5 H 1.08007 * 120.00164 * 239.72756 * 4 2 1 6 6 C 1.37879 * 120.00161 * 60.00284 * 4 2 1 7 7 N 1.31511 * 119.99763 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00098 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47187 * 89.99704 * 8 6 4 10 10 H 1.48491 * 109.47098 * 210.00469 * 8 6 4 11 11 H 1.48508 * 109.47057 * 330.00156 * 8 6 4 12 12 C 1.50700 * 109.47033 * 120.00096 * 2 1 3 13 13 O 1.20822 * 119.99956 * 119.99396 * 12 2 1 14 14 O 1.34226 * 120.00204 * 300.00214 * 12 2 1 15 15 C 1.45198 * 117.00343 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47445 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.63106 * 31.35097 * 16 15 14 18 18 C 1.53070 * 109.63166 * 270.75321 * 16 15 14 19 19 C 1.51816 * 110.72633 * 325.24118 * 18 16 15 20 20 C 1.51775 * 113.79943 * 293.15350 * 19 18 16 21 21 C 1.52994 * 110.87896 * 67.01326 * 20 19 18 22 22 N 1.47195 * 108.66726 * 273.54063 * 21 20 19 23 23 C 1.33371 * 120.43076 * 71.98992 * 22 21 20 24 24 O 1.21279 * 119.89500 * 179.68277 * 23 22 21 25 25 H 1.08998 * 109.47071 * 59.99585 * 1 2 3 26 26 H 1.08999 * 109.47533 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46960 * 300.00119 * 1 2 3 28 28 H 0.96999 * 119.99798 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46691 * 299.99477 * 15 14 12 30 30 H 1.09002 * 109.47273 * 59.99106 * 15 14 12 31 31 H 1.08992 * 109.22105 * 85.53980 * 18 16 15 32 32 H 1.09002 * 109.22034 * 204.89412 * 18 16 15 33 33 H 1.09004 * 108.61110 * 172.04512 * 19 18 16 34 34 H 1.08999 * 108.52850 * 54.20089 * 19 18 16 35 35 H 1.09003 * 109.19724 * 306.65520 * 20 19 18 36 36 H 1.08997 * 109.19974 * 187.37312 * 20 19 18 37 37 H 1.09000 * 109.60525 * 153.78852 * 21 20 19 38 38 H 1.09001 * 109.60311 * 33.28989 * 21 20 19 39 39 H 0.96999 * 119.78756 * 251.97140 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6568 -1.5860 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4872 -0.1403 -5.1120 11 1 3.6307 -1.7568 -3.7120 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7080 -0.2519 2.4496 15 6 2.2276 -0.9858 3.5896 16 6 1.7565 -0.3187 4.8834 17 1 0.7794 0.1378 4.7253 18 6 2.7659 0.7510 5.3076 19 6 4.1800 0.3247 4.9565 20 6 4.6724 -0.8739 5.7468 21 6 3.8878 -2.1331 5.3731 22 7 2.6737 -2.1953 6.2030 23 6 1.6623 -1.3538 5.9846 24 8 0.6642 -1.4175 6.6705 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7096 1.1619 -3.4844 29 1 1.8641 -2.0129 3.5568 30 1 3.3171 -0.9848 3.5565 31 1 2.5353 1.6851 4.7954 32 1 2.6939 0.9055 6.3842 33 1 4.8520 1.1629 5.1409 34 1 4.2144 0.0794 3.8950 35 1 4.5477 -0.6768 6.8116 36 1 5.7294 -1.0339 5.5341 37 1 4.5020 -3.0146 5.5569 38 1 3.6093 -2.0913 4.3201 39 1 2.6086 -2.8529 6.9131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873611656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:33 Heat of formation + Delta-G solvation = -137.506284 kcal Electronic energy + Delta-G solvation = -21464.850151 eV Core-core repulsion = 18179.039178 eV Total energy + Delta-G solvation = -3285.810973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.13878 -41.00703 -38.41722 -37.23881 -35.90728 -35.03234 -32.86619 -32.41808 -29.28519 -27.27607 -26.19827 -25.10206 -24.64756 -22.24966 -20.91495 -20.40506 -18.69041 -18.37592 -18.06236 -17.97219 -17.57203 -16.85371 -16.33556 -16.05746 -15.30546 -15.20181 -15.02792 -14.72583 -14.51910 -14.27775 -14.05605 -13.58243 -13.25678 -12.99557 -12.84129 -12.73922 -12.62537 -12.57688 -12.30121 -12.04373 -11.90018 -11.79704 -11.63203 -11.26101 -11.11298 -11.00096 -10.78806 -10.51667 -10.13616 -8.18552 -6.31772 1.34840 1.42667 1.45022 1.45515 1.55973 1.86894 2.27287 2.45548 3.11886 3.33540 3.49953 3.60746 3.78975 3.95621 4.02662 4.18681 4.31305 4.32651 4.35566 4.56552 4.69409 4.73317 4.76414 4.90698 4.94607 4.99695 5.05388 5.12848 5.21242 5.39028 5.40444 5.47935 5.69992 5.79601 5.88926 6.10905 6.11248 6.74818 7.04095 7.09195 7.37195 8.87887 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031463 B = 0.004421 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.729037 B = 6332.435294 C = 6579.361083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.049 3.951 3 H 0.054 0.946 4 C -0.537 4.537 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.273 1.273 12 C 0.474 3.526 13 O -0.539 6.539 14 O -0.360 6.360 15 C 0.043 3.957 16 C -0.103 4.103 17 H 0.107 0.893 18 C -0.104 4.104 19 C -0.139 4.139 20 C -0.135 4.135 21 C 0.069 3.931 22 N -0.706 5.706 23 C 0.530 3.470 24 O -0.591 6.591 25 H 0.078 0.922 26 H 0.026 0.974 27 H 0.047 0.953 28 H 0.268 0.732 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.921 -1.611 16.247 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.030 3.970 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.198 1.198 12 C 0.320 3.680 13 O -0.428 6.428 14 O -0.277 6.277 15 C -0.030 4.030 16 C -0.125 4.125 17 H 0.125 0.875 18 C -0.142 4.142 19 C -0.176 4.176 20 C -0.173 4.173 21 C -0.053 4.053 22 N -0.357 5.357 23 C 0.316 3.684 24 O -0.472 6.472 25 H 0.096 0.904 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 7.580 -1.685 16.315 18.068 hybrid contribution 0.006 -0.756 -0.612 0.973 sum 7.586 -2.441 15.703 17.609 Atomic orbital electron populations 1.21582 0.94730 0.99777 1.01979 1.18685 0.95637 0.96372 0.86268 0.92845 1.21256 1.32451 1.13413 0.90384 0.92333 1.25640 0.94931 0.95606 1.01594 1.69961 1.36753 1.23364 1.24715 0.85473 0.78762 0.78377 0.78561 1.20014 1.20036 1.19793 1.24786 0.76065 0.82597 0.84575 1.90466 1.37433 1.27518 1.87373 1.86577 1.70246 1.55807 1.15119 1.24118 1.01529 0.94468 0.82858 1.21593 1.03861 0.96414 0.90594 0.87470 1.21307 0.93373 0.97189 1.02323 1.21390 0.95840 0.99882 1.00509 1.21801 1.01100 0.93162 1.01213 1.22696 0.85324 1.01237 0.96086 1.45864 1.17262 1.35720 1.36860 1.20307 0.82195 0.81566 0.84293 1.90735 1.32534 1.72558 1.51376 0.90368 0.95443 0.93403 0.92307 0.92570 0.86198 0.89687 0.90351 0.89288 0.92216 0.90357 0.88073 0.86061 0.90025 0.75198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.90 71.98 0.64 -5.17 16 2 C 0.05 2.49 2.74 -12.29 -0.03 2.46 16 3 H 0.05 2.79 8.14 -2.39 -0.02 2.77 16 4 C -0.54 -29.95 8.37 25.60 0.21 -29.74 16 5 H 0.06 3.40 6.76 -2.91 -0.02 3.39 16 6 C 0.02 1.20 5.30 84.66 0.45 1.65 16 7 N -0.91 -50.00 11.32 21.45 0.24 -49.76 16 8 Si 0.96 43.15 29.54 68.60 2.03 45.17 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 C 0.47 21.64 7.25 71.24 0.52 22.15 16 13 O -0.54 -26.32 15.21 21.98 0.33 -25.99 16 14 O -0.36 -13.65 10.09 -51.38 -0.52 -14.16 16 15 C 0.04 1.27 3.05 71.98 0.22 1.49 16 16 C -0.10 -2.63 2.86 -11.29 -0.03 -2.66 16 17 H 0.11 3.03 8.08 -2.39 -0.02 3.01 16 18 C -0.10 -2.03 5.48 30.23 0.17 -1.87 16 19 C -0.14 -2.26 5.19 29.80 0.15 -2.11 16 20 C -0.13 -1.63 5.74 30.19 0.17 -1.46 16 21 C 0.07 0.99 6.39 86.24 0.55 1.54 16 22 N -0.71 -12.90 5.27 -462.59 -2.44 -15.34 16 23 C 0.53 13.86 6.45 88.11 0.57 14.42 16 24 O -0.59 -20.27 17.92 -3.03 -0.05 -20.32 16 25 H 0.08 4.00 6.07 -2.39 -0.01 3.98 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.98 8.11 -2.39 -0.02 1.96 16 28 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.06 1.76 7.57 -2.39 -0.02 1.74 16 30 H 0.12 3.15 2.78 -2.39 -0.01 3.14 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.39 7.86 -2.39 -0.02 1.38 16 33 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.06 1.21 5.55 -2.39 -0.01 1.19 16 35 H 0.08 0.89 8.05 -2.39 -0.02 0.87 16 36 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.57 3.62 -2.39 -0.01 1.56 16 39 H 0.41 6.13 8.91 -92.71 -0.83 5.31 16 Total: -1.00 -67.73 308.90 3.43 -64.30 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.25 Total: 15.38 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 3.59 Total: 0.72 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -2.20 Total: -65.10 kcal Atomic # 8 Polarization: -60.24 SS G_CDS: -0.24 Total: -60.47 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -67.73 3.43 -64.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873611656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.208 kcal (2) G-P(sol) polarization free energy of solvation -67.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds