Wall clock time and date at job start Mon Mar 30 2020 01:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46859 * 2 1 4 4 N 1.46905 * 109.47010 * 240.00708 * 2 1 3 5 5 C 1.46902 * 110.99800 * 84.99600 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 S 1.81009 * 109.46965 * 179.97438 * 7 6 5 9 9 C 1.76195 * 99.99997 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99978 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99985 * 179.97438 * 9 8 7 12 12 N 1.31631 * 119.99674 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00231 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47102 * 90.00382 * 13 11 9 15 15 H 1.48500 * 109.47585 * 210.00423 * 13 11 9 16 16 H 1.48506 * 109.47219 * 330.00545 * 13 11 9 17 17 C 1.50692 * 109.47219 * 120.00631 * 2 1 3 18 18 C 1.35315 * 126.13007 * 125.02731 * 17 2 1 19 19 C 1.39866 * 107.92537 * 179.97438 * 18 17 2 20 20 N 1.30843 * 108.20046 * 359.97438 * 19 18 17 21 21 N 1.34947 * 126.12790 * 304.71340 * 17 2 1 22 22 C 1.46502 * 126.03687 * 0.03442 * 21 17 2 23 23 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47090 * 299.99397 * 1 2 3 25 25 H 1.09002 * 109.47182 * 59.99378 * 1 2 3 26 26 H 1.00898 * 110.99743 * 321.04650 * 4 2 1 27 27 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 28 28 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 29 29 H 1.08993 * 109.46955 * 300.00347 * 6 5 4 30 30 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 31 31 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 32 32 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 33 33 H 0.97009 * 119.99706 * 179.97438 * 12 11 9 34 34 H 1.08004 * 126.03726 * 359.93947 * 18 17 2 35 35 H 1.07998 * 125.90192 * 179.97438 * 19 18 17 36 36 H 1.08996 * 109.47374 * 90.00099 * 22 21 17 37 37 H 1.09000 * 109.47540 * 210.00167 * 22 21 17 38 38 H 1.09000 * 109.47238 * 330.00112 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 6 2.5962 -0.5325 -3.5743 7 6 2.6608 0.4206 -4.7694 8 16 3.2694 -0.4728 -6.2213 9 6 3.2445 0.8256 -7.4121 10 1 2.9157 1.8139 -7.1266 11 6 3.6485 0.5785 -8.7168 12 7 4.0498 -0.6260 -9.0646 13 14 3.6229 1.9551 -9.9791 14 1 4.9306 2.6587 -9.9708 15 1 3.3760 1.3854 -11.3281 16 1 2.5418 2.9158 -9.6420 17 6 2.0324 -0.7105 1.2303 18 6 2.8898 -1.7571 1.2531 19 6 3.0967 -2.1151 2.5892 20 7 2.3893 -1.3119 3.3418 21 7 1.7124 -0.4132 2.5071 22 6 0.8135 0.6582 2.9433 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.4496 -1.4977 -1.4102 27 1 2.7588 1.0465 -2.1182 28 1 1.0870 0.6166 -2.5526 29 1 3.5916 -0.9259 -3.3684 30 1 1.9201 -1.3564 -3.8032 31 1 1.6653 0.8135 -4.9752 32 1 3.3366 1.2446 -4.5408 33 1 4.3318 -0.7988 -9.9765 34 1 3.3352 -2.2325 0.3916 35 1 3.7308 -2.9162 2.9393 36 1 -0.2055 0.2759 3.0029 37 1 1.1249 1.0170 3.9244 38 1 0.8523 1.4791 2.2272 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879685168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:28 Heat of formation + Delta-G solvation = 63.755983 kcal Electronic energy + Delta-G solvation = -17516.627400 eV Core-core repulsion = 14714.589437 eV Total energy + Delta-G solvation = -2802.037964 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37163 -37.47266 -34.06235 -33.12924 -32.42630 -30.13962 -28.97247 -26.93402 -25.75563 -24.88401 -22.95451 -21.33563 -20.97903 -19.68840 -17.45903 -17.03923 -15.87274 -15.58844 -15.18113 -14.86941 -14.80439 -14.39174 -14.04685 -13.67055 -13.53391 -13.27827 -12.94111 -12.82162 -12.52495 -12.23092 -12.10347 -11.70437 -11.52083 -11.35678 -11.07340 -10.84545 -10.72947 -10.60309 -10.45035 -9.54366 -9.38262 -9.05902 -8.59367 -8.52831 -8.29970 -6.52528 -6.22784 -3.92930 1.76422 2.34033 2.82331 3.21305 3.21768 3.28814 3.53464 3.97115 4.22661 4.32659 4.41952 4.71761 4.78072 4.85667 5.01555 5.07712 5.13126 5.19315 5.22886 5.33372 5.41830 5.47219 5.62949 5.67013 5.74777 5.78634 5.90655 6.04463 6.19799 6.31823 6.58415 6.63202 6.69465 6.83303 6.98080 7.23452 7.60382 7.62940 8.36480 9.23488 10.85390 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.046907 B = 0.002746 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.776748 B =10194.761433 C =10555.303727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.150 3.850 3 H 0.092 0.908 4 N -0.675 5.675 5 C 0.065 3.935 6 C -0.095 4.095 7 C -0.113 4.113 8 S -0.132 6.132 9 C -0.517 4.517 10 H 0.072 0.928 11 C 0.070 3.930 12 N -0.870 5.870 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.090 3.910 18 C -0.244 4.244 19 C 0.040 3.960 20 N -0.305 5.305 21 N -0.377 5.377 22 C 0.100 3.900 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.347 0.653 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.267 0.733 34 H 0.155 0.845 35 H 0.181 0.819 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 1.428 21.239 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.037 3.963 3 H 0.110 0.890 4 N -0.306 5.306 5 C -0.065 4.065 6 C -0.134 4.134 7 C -0.262 4.262 8 S 0.097 5.903 9 C -0.665 4.665 10 H 0.090 0.910 11 C -0.138 4.138 12 N -0.505 5.505 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.038 4.038 18 C -0.273 4.273 19 C -0.145 4.145 20 N -0.126 5.126 21 N -0.161 5.161 22 C -0.042 4.042 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.167 0.833 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.173 0.827 35 H 0.198 0.802 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.528 0.729 22.364 23.309 hybrid contribution -1.095 2.039 -1.708 2.877 sum -7.623 2.768 20.656 22.191 Atomic orbital electron populations 1.22634 0.96030 1.03093 1.02948 1.19876 0.92481 0.96890 0.87006 0.89014 1.60286 1.57297 1.09967 1.03063 1.22080 0.99479 0.95331 0.89638 1.21239 1.02602 0.97837 0.91742 1.23219 1.02714 1.01291 0.98958 1.84649 1.85436 1.18715 1.01541 1.22689 1.50977 0.96752 0.96064 0.91003 1.25016 0.94641 0.96410 0.97757 1.70026 1.41333 1.20027 1.19125 0.86170 0.78609 0.80986 0.79782 1.20262 1.20759 1.19727 1.20958 0.98742 0.98092 0.85982 1.21318 1.06395 1.02050 0.97582 1.23902 0.98918 0.99123 0.92567 1.77333 1.12816 1.04650 1.17827 1.48359 1.37419 1.26713 1.03582 1.21865 0.92387 0.87660 1.02263 0.91751 0.91887 0.91326 0.83348 0.90946 0.95081 0.90549 0.91713 0.92363 0.92114 0.92303 0.82693 0.80172 0.90942 0.89462 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 8.98 37.16 0.33 -1.10 16 2 C 0.15 1.40 2.64 -68.86 -0.18 1.22 16 3 H 0.09 0.84 7.80 -51.93 -0.40 0.44 16 4 N -0.68 -7.19 5.46 -107.94 -0.59 -7.78 16 5 C 0.06 0.78 5.48 -3.82 -0.02 0.76 16 6 C -0.10 -1.47 5.48 -26.73 -0.15 -1.62 16 7 C -0.11 -2.21 5.67 37.16 0.21 -2.00 16 8 S -0.13 -3.42 21.44 -107.50 -2.30 -5.72 16 9 C -0.52 -14.76 9.50 30.94 0.29 -14.47 16 10 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 11 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 12 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 13 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 C 0.09 0.98 6.26 -82.27 -0.51 0.46 16 18 C -0.24 -2.82 10.10 -40.01 -0.40 -3.23 16 19 C 0.04 0.45 12.03 -17.36 -0.21 0.24 16 20 N -0.30 -3.81 12.58 30.62 0.39 -3.43 16 21 N -0.38 -4.05 4.01 -63.89 -0.26 -4.31 16 22 C 0.10 0.67 9.74 59.85 0.58 1.25 16 23 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 24 H 0.06 0.39 5.47 -51.93 -0.28 0.11 16 25 H 0.07 0.52 7.45 -51.93 -0.39 0.13 16 26 H 0.35 3.51 8.47 -39.29 -0.33 3.17 16 27 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 28 H 0.03 0.35 7.44 -51.93 -0.39 -0.03 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.16 1.75 7.79 -52.48 -0.41 1.34 16 35 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.07 0.39 7.80 -51.93 -0.41 -0.01 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.42 7.21 -51.93 -0.37 0.04 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -32.90 329.44 -8.15 -41.05 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.90 Total: 0.59 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -0.15 Total: -16.56 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.27 Total: -40.75 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -2.30 Total: -5.72 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.90 -8.15 -41.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879685168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.804 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds