Wall clock time and date at job start Mon Mar 30 2020 01:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46859 * 2 1 4 4 N 1.46905 * 109.47010 * 240.00708 * 2 1 3 5 5 C 1.46902 * 110.99800 * 84.99600 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 S 1.81009 * 109.46965 * 179.97438 * 7 6 5 9 9 C 1.76195 * 99.99997 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99978 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99985 * 179.97438 * 9 8 7 12 12 N 1.31631 * 119.99674 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00231 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47102 * 90.00382 * 13 11 9 15 15 H 1.48500 * 109.47585 * 210.00423 * 13 11 9 16 16 H 1.48506 * 109.47219 * 330.00545 * 13 11 9 17 17 C 1.50692 * 109.47219 * 120.00631 * 2 1 3 18 18 C 1.35315 * 126.13007 * 125.02731 * 17 2 1 19 19 C 1.39866 * 107.92537 * 179.97438 * 18 17 2 20 20 N 1.30843 * 108.20046 * 359.97438 * 19 18 17 21 21 N 1.34947 * 126.12790 * 304.71340 * 17 2 1 22 22 C 1.46502 * 126.03687 * 0.03442 * 21 17 2 23 23 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47090 * 299.99397 * 1 2 3 25 25 H 1.09002 * 109.47182 * 59.99378 * 1 2 3 26 26 H 1.00898 * 110.99743 * 321.04650 * 4 2 1 27 27 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 28 28 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 29 29 H 1.08993 * 109.46955 * 300.00347 * 6 5 4 30 30 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 31 31 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 32 32 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 33 33 H 0.97009 * 119.99706 * 179.97438 * 12 11 9 34 34 H 1.08004 * 126.03726 * 359.93947 * 18 17 2 35 35 H 1.07998 * 125.90192 * 179.97438 * 19 18 17 36 36 H 1.08996 * 109.47374 * 90.00099 * 22 21 17 37 37 H 1.09000 * 109.47540 * 210.00167 * 22 21 17 38 38 H 1.09000 * 109.47238 * 330.00112 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 6 2.5962 -0.5325 -3.5743 7 6 2.6608 0.4206 -4.7694 8 16 3.2694 -0.4728 -6.2213 9 6 3.2445 0.8256 -7.4121 10 1 2.9157 1.8139 -7.1266 11 6 3.6485 0.5785 -8.7168 12 7 4.0498 -0.6260 -9.0646 13 14 3.6229 1.9551 -9.9791 14 1 4.9306 2.6587 -9.9708 15 1 3.3760 1.3854 -11.3281 16 1 2.5418 2.9158 -9.6420 17 6 2.0324 -0.7105 1.2303 18 6 2.8898 -1.7571 1.2531 19 6 3.0967 -2.1151 2.5892 20 7 2.3893 -1.3119 3.3418 21 7 1.7124 -0.4132 2.5071 22 6 0.8135 0.6582 2.9433 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.4496 -1.4977 -1.4102 27 1 2.7588 1.0465 -2.1182 28 1 1.0870 0.6166 -2.5526 29 1 3.5916 -0.9259 -3.3684 30 1 1.9201 -1.3564 -3.8032 31 1 1.6653 0.8135 -4.9752 32 1 3.3366 1.2446 -4.5408 33 1 4.3318 -0.7988 -9.9765 34 1 3.3352 -2.2325 0.3916 35 1 3.7308 -2.9162 2.9393 36 1 -0.2055 0.2759 3.0029 37 1 1.1249 1.0170 3.9244 38 1 0.8523 1.4791 2.2272 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879685168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:28 Heat of formation + Delta-G solvation = 42.116826 kcal Electronic energy + Delta-G solvation = -17517.565745 eV Core-core repulsion = 14714.589437 eV Total energy + Delta-G solvation = -2802.976308 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.16593 -38.35510 -35.07819 -34.58281 -33.97257 -31.13589 -29.74693 -27.81970 -27.58454 -26.09731 -23.78602 -22.53088 -21.81988 -20.48694 -19.52148 -17.85406 -16.88274 -16.80396 -16.43501 -16.25505 -15.90181 -15.62581 -15.11633 -14.75243 -14.46042 -14.32038 -14.00726 -13.53346 -13.51203 -13.39530 -13.09834 -13.07481 -12.90888 -12.68986 -12.45974 -12.33226 -12.24462 -11.75276 -11.60873 -11.30106 -11.12928 -10.28652 -10.17185 -9.42282 -9.35124 -8.64347 -8.35991 -6.11793 0.95715 1.32519 1.40301 1.49674 1.63879 1.78872 1.98151 2.30186 2.98272 3.07900 3.36042 3.60230 3.79820 4.03562 4.03754 4.14439 4.33843 4.34588 4.39639 4.40358 4.52675 4.57916 4.68398 4.74896 4.80829 4.83400 4.92262 4.98147 5.15649 5.25298 5.31981 5.39955 5.41200 5.82902 5.96632 6.19441 6.20022 6.41045 6.81169 7.06341 8.73389 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.046907 B = 0.002746 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.776748 B =10194.761433 C =10555.303727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.155 3.845 3 H 0.099 0.901 4 N -0.681 5.681 5 C 0.080 3.920 6 C -0.085 4.085 7 C -0.087 4.087 8 S -0.201 6.201 9 C -0.537 4.537 10 H 0.073 0.927 11 C 0.014 3.986 12 N -0.908 5.908 13 Si 0.994 3.006 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.262 1.262 17 C 0.089 3.911 18 C -0.267 4.267 19 C 0.034 3.966 20 N -0.336 5.336 21 N -0.379 5.379 22 C 0.089 3.911 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.351 0.649 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.271 0.729 34 H 0.152 0.848 35 H 0.202 0.798 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.247 3.117 21.829 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.043 3.957 3 H 0.117 0.883 4 N -0.313 5.313 5 C -0.051 4.051 6 C -0.124 4.124 7 C -0.237 4.237 8 S 0.027 5.973 9 C -0.685 4.685 10 H 0.091 0.909 11 C -0.191 4.191 12 N -0.545 5.545 13 Si 0.816 3.184 14 H -0.194 1.194 15 H -0.200 1.200 16 H -0.186 1.186 17 C -0.040 4.040 18 C -0.296 4.296 19 C -0.151 4.151 20 N -0.158 5.158 21 N -0.162 5.162 22 C -0.052 4.052 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.170 0.830 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.170 0.830 35 H 0.219 0.781 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.636 2.420 22.982 24.337 hybrid contribution -0.774 1.495 -1.789 2.456 sum -8.410 3.915 21.193 23.134 Atomic orbital electron populations 1.22577 0.94389 1.03106 1.04034 1.19889 0.93639 0.96642 0.85560 0.88315 1.60165 1.58106 1.10023 1.03009 1.21833 0.99995 0.94836 0.88436 1.21120 1.02330 0.97288 0.91615 1.23153 1.02344 1.01242 0.96930 1.84679 1.86440 1.21034 1.05107 1.23047 1.51222 0.97135 0.97093 0.90859 1.26078 0.93873 0.99146 1.00014 1.70164 1.42169 1.22312 1.19825 0.85017 0.79093 0.77574 0.76736 1.19358 1.19996 1.18608 1.21198 0.98295 0.97864 0.86645 1.21451 1.07407 1.02996 0.97746 1.24298 0.98871 0.99431 0.92455 1.77275 1.13900 1.05686 1.18935 1.48654 1.37369 1.26908 1.03310 1.22211 0.92415 0.87336 1.03207 0.92289 0.90204 0.90831 0.82957 0.90727 0.93705 0.91655 0.91668 0.91765 0.91949 0.92007 0.83049 0.78136 0.89487 0.88924 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.98 71.98 0.65 -1.61 16 2 C 0.15 2.54 2.64 44.17 0.12 2.65 16 3 H 0.10 1.52 7.80 -2.38 -0.02 1.50 16 4 N -0.68 -13.28 5.46 -495.42 -2.70 -15.99 16 5 C 0.08 1.73 5.48 86.31 0.47 2.21 16 6 C -0.08 -2.52 5.48 30.60 0.17 -2.35 16 7 C -0.09 -3.35 5.67 71.98 0.41 -2.95 16 8 S -0.20 -10.63 21.44 -56.49 -1.21 -11.84 16 9 C -0.54 -30.86 9.50 67.95 0.65 -30.21 16 10 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 11 C 0.01 0.78 5.49 84.86 0.47 1.24 16 12 N -0.91 -54.90 13.22 21.65 0.29 -54.61 16 13 Si 0.99 43.68 29.55 68.60 2.03 45.70 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 17 C 0.09 1.80 6.26 41.40 0.26 2.06 16 18 C -0.27 -6.01 10.10 21.99 0.22 -5.79 16 19 C 0.03 0.74 12.03 85.23 1.02 1.77 16 20 N -0.34 -8.15 12.58 -57.02 -0.72 -8.87 16 21 N -0.38 -7.56 4.01 -356.04 -1.43 -8.99 16 22 C 0.09 0.98 9.74 127.77 1.24 2.22 16 23 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 24 H 0.08 0.72 5.47 -2.39 -0.01 0.71 16 25 H 0.07 0.87 7.45 -2.39 -0.02 0.85 16 26 H 0.35 6.52 8.47 -89.70 -0.76 5.76 16 27 H 0.07 1.63 8.06 -2.39 -0.02 1.61 16 28 H 0.04 0.88 7.44 -2.39 -0.02 0.86 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 2.39 8.14 -2.40 -0.02 2.37 16 32 H 0.06 2.37 8.14 -2.40 -0.02 2.35 16 33 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 34 H 0.15 3.41 7.79 -2.91 -0.02 3.38 16 35 H 0.20 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.09 0.72 7.80 -2.39 -0.02 0.70 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.11 0.71 7.21 -2.39 -0.02 0.70 16 Total: -1.00 -71.33 329.44 2.21 -69.13 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.28 Total: 16.22 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 5.67 Total: -30.76 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -4.56 Total: -88.45 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -10.63 SS G_CDS: -1.21 Total: -11.84 kcal Total: -71.33 2.21 -69.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879685168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.243 kcal (2) G-P(sol) polarization free energy of solvation -71.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds