Wall clock time and date at job start Mon Mar 30 2020 01:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46851 * 2 1 4 4 C 1.50695 * 109.47137 * 239.99877 * 2 1 3 5 5 H 1.08000 * 119.99803 * 245.56040 * 4 2 1 6 6 C 1.37878 * 120.00162 * 65.56773 * 4 2 1 7 7 N 1.31510 * 119.99924 * 5.36685 * 6 4 2 8 8 Si 1.86801 * 119.99775 * 185.37059 * 6 4 2 9 9 H 1.48501 * 109.47231 * 94.99487 * 8 6 4 10 10 H 1.48502 * 109.46741 * 214.99209 * 8 6 4 11 11 H 1.48497 * 109.47426 * 334.99522 * 8 6 4 12 12 C 1.50698 * 109.46901 * 119.99702 * 2 1 3 13 13 O 1.21284 * 119.99959 * 114.13288 * 12 2 1 14 14 N 1.34773 * 120.00239 * 294.12639 * 12 2 1 15 15 C 1.47428 * 125.64677 * 357.18106 * 14 12 2 16 16 C 1.55130 * 104.72447 * 155.81463 * 15 14 12 17 17 C 1.55159 * 101.48523 * 37.29408 * 16 15 14 18 18 C 1.47026 * 125.65159 * 177.48357 * 14 12 2 19 19 H 1.08997 * 109.88005 * 300.44486 * 18 14 12 20 20 C 1.52997 * 109.87924 * 61.60910 * 18 14 12 21 21 O 1.43751 * 109.63525 * 304.36628 * 20 18 14 22 22 C 1.44782 * 104.81781 * 215.81042 * 21 20 18 23 23 C 1.54913 * 101.72002 * 36.10113 * 22 21 20 24 24 O 1.43370 * 109.62982 * 185.00071 * 20 18 14 25 25 H 1.08998 * 109.47268 * 173.77568 * 1 2 3 26 26 H 1.08999 * 109.47284 * 293.77637 * 1 2 3 27 27 H 1.09003 * 109.46874 * 53.77861 * 1 2 3 28 28 H 0.97000 * 120.00172 * 180.02562 * 7 6 4 29 29 H 1.09005 * 110.36548 * 274.74227 * 15 14 12 30 30 H 1.08998 * 110.36900 * 37.06906 * 15 14 12 31 31 H 1.09001 * 111.19472 * 279.19159 * 16 15 14 32 32 H 1.08999 * 110.94322 * 155.28424 * 16 15 14 33 33 H 1.09000 * 110.72292 * 205.96989 * 17 16 15 34 34 H 1.09002 * 110.71870 * 82.69588 * 17 16 15 35 35 H 1.09003 * 109.62870 * 64.61078 * 20 18 14 36 36 H 1.08999 * 110.97567 * 277.99430 * 22 21 20 37 37 H 1.09002 * 111.00993 * 154.21845 * 22 21 20 38 38 H 1.09002 * 110.69245 * 206.03936 * 23 22 21 39 39 H 1.08995 * 110.84410 * 82.90713 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5771 -1.6379 -1.1338 6 6 1.7965 -0.1763 -2.4795 7 7 1.2270 1.0037 -2.5932 8 14 2.2858 -1.1288 -4.0101 9 1 1.1178 -1.8986 -4.5085 10 1 2.7380 -0.1805 -5.0596 11 1 3.3905 -2.0643 -3.6790 12 6 2.0323 -0.7103 1.2305 13 8 2.6393 -1.7548 1.1225 14 7 1.8071 -0.1850 2.4510 15 6 1.1383 1.1004 2.7231 16 6 0.5805 0.9574 4.1636 17 6 1.7098 0.1473 4.8533 18 6 2.1933 -0.7958 3.7314 19 1 1.7170 -1.7706 3.8357 20 6 3.7143 -0.9468 3.7980 21 8 4.1752 -1.6994 2.6633 22 6 5.2746 -2.4947 3.1683 23 6 4.7837 -2.8394 4.5966 24 8 4.0768 -1.6475 4.9951 25 1 -0.3634 -1.0216 -0.1114 26 1 -0.3634 0.4143 0.9404 27 1 -0.3633 0.6073 -0.8291 28 1 1.0608 1.3793 -3.4719 29 1 1.8554 1.9196 2.6711 30 1 0.3246 1.2618 2.0161 31 1 -0.3578 0.4027 4.1696 32 1 0.4578 1.9337 4.6325 33 1 1.3165 -0.4237 5.6943 34 1 2.5153 0.8068 5.1765 35 1 4.1806 0.0385 3.7950 36 1 6.1948 -1.9114 3.2021 37 1 5.4091 -3.3980 2.5733 38 1 5.6285 -3.0261 5.2596 39 1 4.1123 -3.6978 4.5793 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888444985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:32 Heat of formation + Delta-G solvation = -112.987033 kcal Electronic energy + Delta-G solvation = -22201.882317 eV Core-core repulsion = 18917.134579 eV Total energy + Delta-G solvation = -3284.747738 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37686 -38.90712 -36.60274 -34.67124 -33.63982 -31.48061 -30.79019 -29.88556 -28.22379 -25.08973 -24.40445 -23.26092 -22.85341 -21.41812 -20.46502 -18.56935 -17.14374 -16.67257 -16.14793 -15.90007 -15.66255 -15.01333 -14.63914 -14.29015 -13.74346 -13.65541 -13.45323 -13.06900 -12.91795 -12.79268 -12.31783 -12.02575 -11.94179 -11.62748 -11.45299 -10.99779 -10.93302 -10.86998 -10.75836 -10.66637 -10.29823 -10.18671 -10.00647 -9.86044 -9.50415 -8.89626 -8.38316 -8.18716 -7.86571 -5.98832 -3.97678 3.36585 3.37840 3.43102 3.51211 3.91974 3.95919 4.25518 4.52774 4.70911 4.74502 4.87315 4.96806 5.06299 5.17726 5.31598 5.37027 5.48331 5.53807 5.61781 5.71617 5.78298 5.83803 5.95471 5.99344 6.08770 6.14566 6.26836 6.40874 6.71235 6.91106 6.94639 7.02704 7.34108 7.55459 7.74878 8.05167 8.22738 8.56050 9.11757 9.45451 9.66916 11.11840 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021491 B = 0.006582 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.552712 B = 4253.219548 C = 5345.782138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.035 3.965 3 H 0.052 0.948 4 C -0.497 4.497 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.528 3.472 13 O -0.504 6.504 14 N -0.625 5.625 15 C 0.093 3.907 16 C -0.133 4.133 17 C -0.118 4.118 18 C 0.126 3.874 19 H 0.074 0.926 20 C 0.219 3.781 21 O -0.317 6.317 22 C 0.008 3.992 23 C 0.024 3.976 24 O -0.389 6.389 25 H 0.034 0.966 26 H 0.023 0.977 27 H 0.075 0.925 28 H 0.259 0.741 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -0.817 15.738 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.014 3.986 3 H 0.070 0.930 4 C -0.536 4.536 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.197 1.197 12 C 0.319 3.681 13 O -0.376 6.376 14 N -0.364 5.364 15 C -0.030 4.030 16 C -0.171 4.171 17 C -0.156 4.156 18 C 0.021 3.979 19 H 0.092 0.908 20 C 0.122 3.878 21 O -0.235 6.235 22 C -0.069 4.069 23 C -0.053 4.053 24 O -0.310 6.310 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.377 -1.258 15.396 15.629 hybrid contribution 0.418 -0.413 -0.802 0.994 sum 2.795 -1.670 14.594 14.953 Atomic orbital electron populations 1.21821 0.97077 1.00516 0.99433 1.18804 0.93571 0.97047 0.89154 0.92989 1.21156 1.34781 1.08486 0.89149 0.90814 1.24940 0.95393 0.94824 0.99030 1.69940 1.44143 1.16022 1.23621 0.86492 0.78838 0.79776 0.82446 1.20778 1.21386 1.19745 1.21756 0.77952 0.85609 0.82771 1.90588 1.38667 1.23436 1.84904 1.48885 1.61065 1.21897 1.04598 1.22525 0.97419 0.86599 0.96437 1.22848 0.98286 1.00541 0.95469 1.22530 0.98557 0.97793 0.96683 1.21751 0.92418 0.98101 0.85598 0.90795 1.24591 0.94722 0.93179 0.75267 1.89938 1.47118 1.57950 1.28539 1.24338 0.91779 0.96999 0.93798 1.24145 0.96355 0.88764 0.96017 1.88798 1.76062 1.36210 1.29906 0.94670 0.95870 0.90627 0.93102 0.92131 0.88963 0.90689 0.90165 0.90212 0.90688 0.90703 0.91577 0.87724 0.88846 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.74 37.16 0.32 -2.73 16 2 C 0.04 0.91 1.89 -92.93 -0.18 0.73 16 3 H 0.05 1.41 8.07 -51.93 -0.42 0.99 16 4 C -0.50 -14.47 8.30 -34.44 -0.29 -14.76 16 5 H 0.07 2.27 6.78 -52.49 -0.36 1.92 16 6 C 0.06 1.67 5.29 -17.82 -0.09 1.57 16 7 N -0.90 -25.81 12.02 55.43 0.67 -25.15 16 8 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.53 12.68 6.77 -10.99 -0.07 12.61 16 13 O -0.50 -13.50 12.41 -19.33 -0.24 -13.74 16 14 N -0.62 -11.94 3.06 -162.87 -0.50 -12.43 16 15 C 0.09 1.43 6.51 -2.41 -0.02 1.41 16 16 C -0.13 -1.54 7.10 -24.46 -0.17 -1.71 16 17 C -0.12 -1.44 6.32 -24.89 -0.16 -1.59 16 18 C 0.13 2.09 3.09 -66.95 -0.21 1.89 16 19 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 20 C 0.22 3.68 3.58 37.16 0.13 3.81 16 21 O -0.32 -6.27 7.35 -67.87 -0.50 -6.77 16 22 C 0.01 0.11 7.95 38.17 0.30 0.42 16 23 C 0.02 0.29 8.07 38.17 0.31 0.60 16 24 O -0.39 -5.77 11.05 -59.04 -0.65 -6.42 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.02 0.45 5.10 -51.93 -0.26 0.19 16 27 H 0.07 1.89 6.89 -51.93 -0.36 1.54 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.47 4.89 -51.93 -0.25 1.22 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.85 7.78 -51.93 -0.40 0.45 16 35 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 307.66 15.07 4.64 4.64 Total: -1.00 -33.26 307.66 -7.56 -40.82 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.84 Total: -0.44 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.11 Total: 2.25 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.17 Total: -37.58 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -1.39 Total: -26.94 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.26 -7.56 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888444985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.164 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds