Wall clock time and date at job start Mon Mar 30 2020 01:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46851 * 2 1 4 4 C 1.50695 * 109.47137 * 239.99877 * 2 1 3 5 5 H 1.08000 * 119.99803 * 245.56040 * 4 2 1 6 6 C 1.37878 * 120.00162 * 65.56773 * 4 2 1 7 7 N 1.31510 * 119.99924 * 5.36685 * 6 4 2 8 8 Si 1.86801 * 119.99775 * 185.37059 * 6 4 2 9 9 H 1.48501 * 109.47231 * 94.99487 * 8 6 4 10 10 H 1.48502 * 109.46741 * 214.99209 * 8 6 4 11 11 H 1.48497 * 109.47426 * 334.99522 * 8 6 4 12 12 C 1.50698 * 109.46901 * 119.99702 * 2 1 3 13 13 O 1.21284 * 119.99959 * 114.13288 * 12 2 1 14 14 N 1.34773 * 120.00239 * 294.12639 * 12 2 1 15 15 C 1.47428 * 125.64677 * 357.18106 * 14 12 2 16 16 C 1.55130 * 104.72447 * 155.81463 * 15 14 12 17 17 C 1.55159 * 101.48523 * 37.29408 * 16 15 14 18 18 C 1.47026 * 125.65159 * 177.48357 * 14 12 2 19 19 H 1.08997 * 109.88005 * 300.44486 * 18 14 12 20 20 C 1.52997 * 109.87924 * 61.60910 * 18 14 12 21 21 O 1.43751 * 109.63525 * 304.36628 * 20 18 14 22 22 C 1.44782 * 104.81781 * 215.81042 * 21 20 18 23 23 C 1.54913 * 101.72002 * 36.10113 * 22 21 20 24 24 O 1.43370 * 109.62982 * 185.00071 * 20 18 14 25 25 H 1.08998 * 109.47268 * 173.77568 * 1 2 3 26 26 H 1.08999 * 109.47284 * 293.77637 * 1 2 3 27 27 H 1.09003 * 109.46874 * 53.77861 * 1 2 3 28 28 H 0.97000 * 120.00172 * 180.02562 * 7 6 4 29 29 H 1.09005 * 110.36548 * 274.74227 * 15 14 12 30 30 H 1.08998 * 110.36900 * 37.06906 * 15 14 12 31 31 H 1.09001 * 111.19472 * 279.19159 * 16 15 14 32 32 H 1.08999 * 110.94322 * 155.28424 * 16 15 14 33 33 H 1.09000 * 110.72292 * 205.96989 * 17 16 15 34 34 H 1.09002 * 110.71870 * 82.69588 * 17 16 15 35 35 H 1.09003 * 109.62870 * 64.61078 * 20 18 14 36 36 H 1.08999 * 110.97567 * 277.99430 * 22 21 20 37 37 H 1.09002 * 111.00993 * 154.21845 * 22 21 20 38 38 H 1.09002 * 110.69245 * 206.03936 * 23 22 21 39 39 H 1.08995 * 110.84410 * 82.90713 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5771 -1.6379 -1.1338 6 6 1.7965 -0.1763 -2.4795 7 7 1.2270 1.0037 -2.5932 8 14 2.2858 -1.1288 -4.0101 9 1 1.1178 -1.8986 -4.5085 10 1 2.7380 -0.1805 -5.0596 11 1 3.3905 -2.0643 -3.6790 12 6 2.0323 -0.7103 1.2305 13 8 2.6393 -1.7548 1.1225 14 7 1.8071 -0.1850 2.4510 15 6 1.1383 1.1004 2.7231 16 6 0.5805 0.9574 4.1636 17 6 1.7098 0.1473 4.8533 18 6 2.1933 -0.7958 3.7314 19 1 1.7170 -1.7706 3.8357 20 6 3.7143 -0.9468 3.7980 21 8 4.1752 -1.6994 2.6633 22 6 5.2746 -2.4947 3.1683 23 6 4.7837 -2.8394 4.5966 24 8 4.0768 -1.6475 4.9951 25 1 -0.3634 -1.0216 -0.1114 26 1 -0.3634 0.4143 0.9404 27 1 -0.3633 0.6073 -0.8291 28 1 1.0608 1.3793 -3.4719 29 1 1.8554 1.9196 2.6711 30 1 0.3246 1.2618 2.0161 31 1 -0.3578 0.4027 4.1696 32 1 0.4578 1.9337 4.6325 33 1 1.3165 -0.4237 5.6943 34 1 2.5153 0.8068 5.1765 35 1 4.1806 0.0385 3.7950 36 1 6.1948 -1.9114 3.2021 37 1 5.4091 -3.3980 2.5733 38 1 5.6285 -3.0261 5.2596 39 1 4.1123 -3.6978 4.5793 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888444985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:32 Heat of formation + Delta-G solvation = -135.004450 kcal Electronic energy + Delta-G solvation = -22202.837064 eV Core-core repulsion = 18917.134579 eV Total energy + Delta-G solvation = -3285.702485 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.66495 -40.39520 -38.14999 -35.93661 -35.70076 -33.22497 -31.97439 -31.57655 -29.40692 -27.20141 -25.79171 -24.73763 -24.08512 -22.83432 -21.76995 -20.10001 -18.40672 -18.26709 -17.96582 -17.40517 -17.06021 -16.61795 -16.16890 -15.71856 -15.38323 -15.13721 -14.75753 -14.49155 -14.31281 -14.11662 -13.78644 -13.57064 -13.44264 -13.08775 -12.89277 -12.71902 -12.64443 -12.51668 -12.21776 -12.09097 -11.93914 -11.84351 -11.63844 -11.13877 -11.01310 -10.77872 -10.54277 -10.08474 -9.38772 -8.17789 -6.23921 1.38349 1.38826 1.51453 2.00350 2.14149 2.43602 2.69654 3.04554 3.14576 3.59143 3.69643 3.75369 3.85306 4.02209 4.10585 4.18231 4.31089 4.37691 4.47647 4.57981 4.62003 4.68716 4.72734 4.78167 4.93270 4.96115 4.99157 5.07633 5.14019 5.19030 5.34787 5.44093 5.59430 5.72569 5.88470 6.13833 6.22301 6.75240 6.89049 7.41734 7.67674 8.91776 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021491 B = 0.006582 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.552712 B = 4253.219548 C = 5345.782138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.034 3.966 3 H 0.034 0.966 4 C -0.526 4.526 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.525 3.475 13 O -0.543 6.543 14 N -0.622 5.622 15 C 0.081 3.919 16 C -0.117 4.117 17 C -0.106 4.106 18 C 0.119 3.881 19 H 0.056 0.944 20 C 0.220 3.780 21 O -0.365 6.365 22 C -0.002 4.002 23 C 0.027 3.973 24 O -0.389 6.389 25 H 0.022 0.978 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.265 0.735 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.132 0.868 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 -0.219 17.606 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.013 3.987 3 H 0.052 0.948 4 C -0.564 4.564 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.200 1.200 11 H -0.206 1.206 12 C 0.315 3.685 13 O -0.418 6.418 14 N -0.360 5.360 15 C -0.040 4.040 16 C -0.155 4.155 17 C -0.144 4.144 18 C 0.015 3.985 19 H 0.074 0.926 20 C 0.123 3.877 21 O -0.285 6.285 22 C -0.078 4.078 23 C -0.048 4.048 24 O -0.310 6.310 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.150 0.850 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.091 -0.626 17.308 17.445 hybrid contribution 0.551 -0.598 -1.335 1.563 sum 2.642 -1.224 15.973 16.236 Atomic orbital electron populations 1.21630 0.95439 0.99584 1.00682 1.18684 0.94856 0.95655 0.89505 0.94825 1.21277 1.35661 1.08158 0.91321 0.93558 1.25593 0.95238 0.95659 1.01407 1.70006 1.44157 1.16637 1.24507 0.85613 0.78502 0.78668 0.79292 1.19720 1.19952 1.20552 1.21303 0.77944 0.85209 0.84042 1.90560 1.40350 1.24994 1.85921 1.48701 1.60136 1.22968 1.04204 1.22817 0.97241 0.84970 0.99022 1.22846 0.97856 1.02466 0.92347 1.22559 0.99117 0.97221 0.95472 1.22022 0.92560 0.98375 0.85579 0.92611 1.24554 0.94673 0.93194 0.75279 1.89899 1.48912 1.59046 1.30678 1.24597 0.91292 0.96905 0.95054 1.24315 0.97332 0.87815 0.95384 1.88770 1.76378 1.36954 1.28880 0.95848 0.92131 0.92513 0.92632 0.91304 0.89859 0.90069 0.86536 0.88057 0.89321 0.90615 0.90079 0.87571 0.84993 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.74 71.98 0.63 -4.85 16 2 C 0.03 1.82 1.89 -12.29 -0.02 1.80 16 3 H 0.03 1.89 8.07 -2.39 -0.02 1.87 16 4 C -0.53 -31.78 8.30 25.60 0.21 -31.56 16 5 H 0.05 3.00 6.78 -2.91 -0.02 2.98 16 6 C 0.02 1.16 5.29 84.66 0.45 1.61 16 7 N -0.91 -53.05 12.02 21.45 0.26 -52.79 16 8 Si 0.95 46.31 29.54 68.60 2.03 48.34 16 9 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 12 C 0.52 26.01 6.77 87.66 0.59 26.60 16 13 O -0.54 -30.44 12.41 20.75 0.26 -30.18 16 14 N -0.62 -23.71 3.06 -787.60 -2.41 -26.12 16 15 C 0.08 2.35 6.51 86.93 0.57 2.91 16 16 C -0.12 -2.27 7.10 32.06 0.23 -2.04 16 17 C -0.11 -2.23 6.32 31.78 0.20 -2.03 16 18 C 0.12 3.83 3.09 45.34 0.14 3.97 16 19 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 20 C 0.22 7.25 3.58 71.98 0.26 7.51 16 21 O -0.37 -14.83 7.35 -117.77 -0.87 -15.70 16 22 C 0.00 -0.06 7.95 72.64 0.58 0.51 16 23 C 0.03 0.63 8.07 72.64 0.59 1.22 16 24 O -0.39 -10.84 11.05 -126.22 -1.40 -12.24 16 25 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 2.35 5.10 -2.39 -0.01 2.34 16 27 H 0.06 2.88 6.89 -2.39 -0.02 2.86 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.08 2.54 4.89 -2.39 -0.01 2.52 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.67 7.78 -2.39 -0.02 1.66 16 35 H 0.08 2.44 8.04 -2.39 -0.02 2.42 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -74.95 307.66 3.32 -71.62 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.04 Total: 11.42 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 4.42 Total: 5.65 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -2.15 Total: -78.91 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -2.00 Total: -58.12 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -74.95 3.32 -71.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888444985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.381 kcal (2) G-P(sol) polarization free energy of solvation -74.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds